Wall clock time and date at job start Mon Mar 30 2020 04:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.50126 * 2 1 4 4 C 1.53033 * 109.50120 * 239.91889 * 2 1 3 5 5 N 1.46852 * 109.52418 * 180.84206 * 4 2 1 6 6 C 1.46896 * 111.00116 * 185.84181 * 5 4 2 7 7 C 1.52998 * 109.47392 * 75.71444 * 6 5 4 8 8 O 1.42906 * 109.46925 * 64.58920 * 7 6 5 9 9 C 1.42897 * 114.00032 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47254 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99688 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00126 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00433 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99837 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46932 * 90.00192 * 14 12 10 16 16 H 1.48506 * 109.47124 * 209.99596 * 14 12 10 17 17 H 1.48494 * 109.47319 * 329.99674 * 14 12 10 18 18 C 1.46847 * 111.19768 * 61.73926 * 5 4 2 19 19 C 1.53038 * 109.52280 * 298.26078 * 18 5 4 20 20 C 1.53117 * 109.27812 * 59.18081 * 19 18 5 21 21 H 1.08999 * 109.51871 * 182.43549 * 20 19 18 22 22 N 1.46905 * 109.52386 * 62.24879 * 20 19 18 23 23 H 1.08993 * 109.47278 * 180.08301 * 1 2 3 24 24 H 1.09004 * 109.46943 * 300.08237 * 1 2 3 25 25 H 1.08996 * 109.46940 * 60.07744 * 1 2 3 26 26 H 1.09001 * 109.46273 * 300.85774 * 4 2 1 27 27 H 1.09002 * 109.46299 * 60.82600 * 4 2 1 28 28 H 1.08996 * 109.47067 * 195.71580 * 6 5 4 29 29 H 1.09007 * 109.46815 * 315.71870 * 6 5 4 30 30 H 1.09005 * 109.47651 * 184.58476 * 7 6 5 31 31 H 1.08996 * 109.47442 * 304.58779 * 7 6 5 32 32 H 1.08999 * 109.46840 * 299.99488 * 9 8 7 33 33 H 1.09003 * 109.47368 * 59.99727 * 9 8 7 34 34 H 0.96996 * 120.00766 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.45931 * 178.24459 * 18 5 4 36 36 H 1.09004 * 109.45815 * 58.27462 * 18 5 4 37 37 H 1.08994 * 109.50561 * 299.23611 * 19 18 5 38 38 H 1.09007 * 109.53015 * 179.13902 * 19 18 5 39 39 H 1.00898 * 110.99513 * 60.31742 * 22 20 19 40 40 H 1.00898 * 110.99683 * 184.27235 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0409 -0.7230 -1.2483 5 7 3.5093 -0.7410 -1.2386 6 6 4.0371 -1.3043 -2.4884 7 6 3.9076 -0.2703 -3.6086 8 8 4.7343 0.8575 -3.3138 9 6 4.6858 1.8880 -4.3026 10 6 5.5894 3.0218 -3.8913 11 1 6.1454 2.9612 -2.9674 12 6 5.7072 4.1358 -4.6950 13 7 5.0314 4.2089 -5.8208 14 14 6.8278 5.5408 -4.1854 15 1 8.1898 5.3101 -4.7303 16 1 6.2918 6.8194 -4.7177 17 1 6.8925 5.6099 -2.7035 18 6 4.0238 -1.4716 -0.0733 19 6 3.5720 -0.7709 1.2100 20 6 2.0421 -0.7236 1.2485 21 1 1.7166 -0.1871 2.1397 22 7 1.5091 -2.0923 1.2758 23 1 -0.3633 -1.0276 0.0015 24 1 -0.3633 0.5151 0.8893 25 1 -0.3633 0.5126 -0.8907 26 1 1.6653 -1.7463 -1.2546 27 1 1.6899 -0.2020 -2.1390 28 1 5.0869 -1.5652 -2.3544 29 1 3.4712 -2.1980 -2.7516 30 1 4.2234 -0.7153 -4.5523 31 1 2.8692 0.0512 -3.6881 32 1 5.0175 1.4879 -5.2608 33 1 3.6634 2.2542 -4.3961 34 1 5.1144 4.9925 -6.3865 35 1 5.1129 -1.4942 -0.1108 36 1 3.6388 -2.4913 -0.0852 37 1 3.9681 0.2444 1.2290 38 1 3.9410 -1.3217 2.0752 39 1 1.8334 -2.5903 2.0913 40 1 0.5011 -2.0888 1.2313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385182561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:49 Heat of formation + Delta-G solvation = -53.778101 kcal Electronic energy + Delta-G solvation = -18178.948732 eV Core-core repulsion = 15414.084002 eV Total energy + Delta-G solvation = -2764.864730 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.40492 -36.69845 -34.89322 -32.61315 -32.31100 -30.58202 -28.29598 -26.69688 -26.27378 -23.51652 -22.21091 -21.75013 -20.70976 -18.84596 -16.33408 -16.27217 -15.92158 -15.59337 -15.07645 -14.76697 -14.18781 -14.14871 -13.99356 -13.24080 -13.03821 -12.89949 -12.71121 -12.32569 -11.92864 -11.82131 -11.43500 -11.21746 -11.03043 -10.77395 -10.75171 -10.64587 -10.48657 -10.28889 -10.08877 -9.85304 -8.98159 -8.80467 -8.68957 -8.02118 -7.77536 -6.02264 -4.02755 3.35763 3.40329 3.46582 4.16270 4.43077 4.46608 4.73756 4.83579 5.01860 5.05632 5.24901 5.34136 5.50270 5.53534 5.57257 5.66709 5.70990 5.75435 5.85099 5.86792 5.92320 6.08761 6.12198 6.12694 6.19495 6.27772 6.36932 6.44605 6.48640 7.03455 7.22636 7.30122 7.49374 7.51569 7.55632 7.89985 8.27654 8.74766 9.13070 9.61883 11.09546 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.004910 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.401670 B = 5700.781555 C = 5821.285017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 H 0.083 0.917 4 C 0.071 3.929 5 N -0.525 5.525 6 C 0.063 3.937 7 C 0.070 3.930 8 O -0.379 6.379 9 C 0.194 3.806 10 C -0.508 4.508 11 H 0.066 0.934 12 C 0.055 3.945 13 N -0.901 5.901 14 Si 0.906 3.094 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.272 1.272 18 C 0.067 3.933 19 C -0.109 4.109 20 C 0.095 3.905 21 H 0.032 0.968 22 N -0.844 5.844 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.001 0.999 33 H 0.002 0.998 34 H 0.262 0.738 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.336 0.664 40 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.163 -12.512 13.002 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 H 0.102 0.898 4 C -0.057 4.057 5 N -0.249 5.249 6 C -0.065 4.065 7 C -0.009 4.009 8 O -0.299 6.299 9 C 0.120 3.880 10 C -0.546 4.546 11 H 0.084 0.916 12 C -0.146 4.146 13 N -0.541 5.541 14 Si 0.734 3.266 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.196 1.196 18 C -0.061 4.061 19 C -0.148 4.148 20 C -0.017 4.017 21 H 0.050 0.950 22 N -0.376 5.376 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.148 0.852 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.506 -11.983 12.365 18.783 hybrid contribution -0.418 0.281 0.652 0.823 sum -7.923 -11.702 13.017 19.213 Atomic orbital electron populations 1.21816 0.95504 1.01457 1.01877 1.21198 0.94688 1.00204 0.94255 0.89816 1.21993 0.87639 0.98794 0.97308 1.61754 1.07428 1.54080 1.01626 1.22083 1.00186 0.94462 0.89724 1.22224 0.94640 0.88985 0.95020 1.87935 1.65282 1.28029 1.48635 1.20154 0.96252 0.84975 0.86660 1.21076 1.25692 1.00717 1.07142 0.91575 1.24939 0.96306 0.98475 0.94860 1.69967 1.41936 1.29797 1.12395 0.86364 0.80423 0.80930 0.78928 1.20551 1.21179 1.19639 1.21904 0.98963 0.95296 0.89949 1.21604 0.94100 1.01869 0.97179 1.21375 0.95266 0.88559 0.96460 0.95036 1.58783 1.14517 1.16323 1.47958 0.92597 0.92991 0.92187 0.94285 0.91356 0.90545 0.94369 0.94631 0.94819 0.98136 0.98007 0.92807 0.91542 0.94289 0.90547 0.92204 0.85178 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.82 37.16 0.33 -1.18 16 2 C -0.08 -1.06 2.71 -90.54 -0.25 -1.30 16 3 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.07 1.02 4.43 -3.83 -0.02 1.00 16 5 N -0.52 -8.48 4.53 -234.67 -1.06 -9.54 16 6 C 0.06 1.04 5.39 -3.83 -0.02 1.02 16 7 C 0.07 1.38 6.13 37.16 0.23 1.61 16 8 O -0.38 -9.65 10.27 -35.23 -0.36 -10.01 16 9 C 0.19 5.55 5.69 36.01 0.20 5.76 16 10 C -0.51 -15.47 9.43 -34.44 -0.32 -15.79 16 11 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 12 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.65 13.29 55.43 0.74 -26.92 16 14 Si 0.91 22.40 29.54 -169.99 -5.02 17.38 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 18 C 0.07 0.91 5.28 -3.83 -0.02 0.89 16 19 C -0.11 -1.31 5.76 -26.65 -0.15 -1.46 16 20 C 0.09 1.02 3.14 -67.59 -0.21 0.81 16 21 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 22 N -0.84 -7.66 7.89 -4.56 -0.04 -7.70 16 23 H 0.06 0.50 6.54 -51.93 -0.34 0.16 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.54 7.69 -51.93 -0.40 0.14 16 27 H 0.07 1.07 6.65 -51.93 -0.35 0.72 16 28 H 0.08 1.25 7.79 -51.93 -0.40 0.84 16 29 H 0.04 0.54 8.00 -51.92 -0.42 0.13 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.03 0.66 6.71 -51.93 -0.35 0.31 16 32 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 33 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 36 H 0.04 0.52 7.69 -51.93 -0.40 0.12 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.34 2.54 9.04 -39.29 -0.36 2.18 16 40 H 0.34 2.69 6.97 -39.29 -0.27 2.42 16 LS Contribution 313.47 15.07 4.72 4.72 Total: -1.00 -32.30 313.47 -8.39 -40.69 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.04 Total: -1.50 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -0.33 Total: -7.12 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.36 Total: -44.16 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.36 Total: -10.01 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.30 -8.39 -40.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385182561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.086 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds