Wall clock time and date at job start Mon Mar 30 2020 04:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.50126 * 2 1 4 4 C 1.53033 * 109.50120 * 239.91889 * 2 1 3 5 5 N 1.46852 * 109.52418 * 180.84206 * 4 2 1 6 6 C 1.46896 * 111.00116 * 185.84181 * 5 4 2 7 7 C 1.52998 * 109.47392 * 75.71444 * 6 5 4 8 8 O 1.42906 * 109.46925 * 64.58920 * 7 6 5 9 9 C 1.42897 * 114.00032 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47254 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99688 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00126 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00433 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99837 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46932 * 90.00192 * 14 12 10 16 16 H 1.48506 * 109.47124 * 209.99596 * 14 12 10 17 17 H 1.48494 * 109.47319 * 329.99674 * 14 12 10 18 18 C 1.46847 * 111.19768 * 61.73926 * 5 4 2 19 19 C 1.53038 * 109.52280 * 298.26078 * 18 5 4 20 20 C 1.53117 * 109.27812 * 59.18081 * 19 18 5 21 21 H 1.08999 * 109.51871 * 182.43549 * 20 19 18 22 22 N 1.46905 * 109.52386 * 62.24879 * 20 19 18 23 23 H 1.08993 * 109.47278 * 180.08301 * 1 2 3 24 24 H 1.09004 * 109.46943 * 300.08237 * 1 2 3 25 25 H 1.08996 * 109.46940 * 60.07744 * 1 2 3 26 26 H 1.09001 * 109.46273 * 300.85774 * 4 2 1 27 27 H 1.09002 * 109.46299 * 60.82600 * 4 2 1 28 28 H 1.08996 * 109.47067 * 195.71580 * 6 5 4 29 29 H 1.09007 * 109.46815 * 315.71870 * 6 5 4 30 30 H 1.09005 * 109.47651 * 184.58476 * 7 6 5 31 31 H 1.08996 * 109.47442 * 304.58779 * 7 6 5 32 32 H 1.08999 * 109.46840 * 299.99488 * 9 8 7 33 33 H 1.09003 * 109.47368 * 59.99727 * 9 8 7 34 34 H 0.96996 * 120.00766 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.45931 * 178.24459 * 18 5 4 36 36 H 1.09004 * 109.45815 * 58.27462 * 18 5 4 37 37 H 1.08994 * 109.50561 * 299.23611 * 19 18 5 38 38 H 1.09007 * 109.53015 * 179.13902 * 19 18 5 39 39 H 1.00898 * 110.99513 * 60.31742 * 22 20 19 40 40 H 1.00898 * 110.99683 * 184.27235 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0409 -0.7230 -1.2483 5 7 3.5093 -0.7410 -1.2386 6 6 4.0371 -1.3043 -2.4884 7 6 3.9076 -0.2703 -3.6086 8 8 4.7343 0.8575 -3.3138 9 6 4.6858 1.8880 -4.3026 10 6 5.5894 3.0218 -3.8913 11 1 6.1454 2.9612 -2.9674 12 6 5.7072 4.1358 -4.6950 13 7 5.0314 4.2089 -5.8208 14 14 6.8278 5.5408 -4.1854 15 1 8.1898 5.3101 -4.7303 16 1 6.2918 6.8194 -4.7177 17 1 6.8925 5.6099 -2.7035 18 6 4.0238 -1.4716 -0.0733 19 6 3.5720 -0.7709 1.2100 20 6 2.0421 -0.7236 1.2485 21 1 1.7166 -0.1871 2.1397 22 7 1.5091 -2.0923 1.2758 23 1 -0.3633 -1.0276 0.0015 24 1 -0.3633 0.5151 0.8893 25 1 -0.3633 0.5126 -0.8907 26 1 1.6653 -1.7463 -1.2546 27 1 1.6899 -0.2020 -2.1390 28 1 5.0869 -1.5652 -2.3544 29 1 3.4712 -2.1980 -2.7516 30 1 4.2234 -0.7153 -4.5523 31 1 2.8692 0.0512 -3.6881 32 1 5.0175 1.4879 -5.2608 33 1 3.6634 2.2542 -4.3961 34 1 5.1144 4.9925 -6.3865 35 1 5.1129 -1.4942 -0.1108 36 1 3.6388 -2.4913 -0.0852 37 1 3.9681 0.2444 1.2290 38 1 3.9410 -1.3217 2.0752 39 1 1.8334 -2.5903 2.0913 40 1 0.5011 -2.0888 1.2313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385182561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:48 Heat of formation + Delta-G solvation = -77.986617 kcal Electronic energy + Delta-G solvation = -18179.998492 eV Core-core repulsion = 15414.084002 eV Total energy + Delta-G solvation = -2765.914490 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.48042 -38.50481 -36.17491 -34.83840 -33.27288 -31.74976 -29.85831 -28.53064 -27.35271 -24.75040 -24.41030 -22.82810 -22.06741 -19.82672 -18.60184 -17.44298 -17.33012 -16.95433 -16.49211 -16.23424 -15.76742 -15.60537 -15.40489 -14.68510 -14.16430 -14.06045 -13.87873 -13.65654 -13.48113 -13.06668 -12.91400 -12.81128 -12.69963 -12.54539 -12.20447 -12.06503 -11.81632 -11.68628 -11.37465 -11.24756 -11.07651 -10.83475 -10.15824 -9.58536 -8.94006 -8.30546 -6.42660 1.39718 1.43167 1.55376 2.36184 3.00383 3.02861 3.27926 3.65901 3.81267 3.90176 4.06004 4.23629 4.31750 4.34756 4.44784 4.57127 4.58834 4.61876 4.67168 4.77130 4.83583 4.88069 4.89575 4.96111 5.01020 5.03415 5.18890 5.20334 5.26026 5.34954 5.49371 5.56872 5.99065 6.26049 6.32685 6.36542 6.59175 6.69867 6.88564 7.29728 8.82061 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.004910 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.401670 B = 5700.781555 C = 5821.285017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 H 0.054 0.946 4 C 0.075 3.925 5 N -0.553 5.553 6 C 0.071 3.929 7 C 0.061 3.939 8 O -0.394 6.394 9 C 0.210 3.790 10 C -0.545 4.545 11 H 0.059 0.941 12 C 0.006 3.994 13 N -0.932 5.932 14 Si 0.984 3.016 15 H -0.266 1.266 16 H -0.273 1.273 17 H -0.266 1.266 18 C 0.070 3.930 19 C -0.109 4.109 20 C 0.103 3.897 21 H 0.043 0.957 22 N -0.844 5.844 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.032 0.968 32 H -0.017 1.017 33 H -0.021 1.021 34 H 0.270 0.730 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.348 0.652 40 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.187 -12.975 14.468 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.072 0.928 4 C -0.053 4.053 5 N -0.278 5.278 6 C -0.056 4.056 7 C -0.016 4.016 8 O -0.314 6.314 9 C 0.134 3.866 10 C -0.582 4.582 11 H 0.077 0.923 12 C -0.192 4.192 13 N -0.572 5.572 14 Si 0.806 3.194 15 H -0.191 1.191 16 H -0.198 1.198 17 H -0.190 1.190 18 C -0.058 4.058 19 C -0.147 4.147 20 C -0.008 4.008 21 H 0.060 0.940 22 N -0.378 5.378 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.001 0.999 33 H -0.003 1.003 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.162 0.838 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.546 -12.479 13.842 20.107 hybrid contribution -0.460 0.354 0.166 0.603 sum -8.007 -12.125 14.008 20.183 Atomic orbital electron populations 1.21764 0.93537 1.02581 1.02101 1.21181 0.96351 0.98538 0.94469 0.92791 1.21959 0.86750 0.99209 0.97350 1.61716 1.08572 1.55297 1.02221 1.21986 1.00800 0.93898 0.88961 1.22561 0.93704 0.88058 0.97307 1.87893 1.66631 1.28940 1.47896 1.19778 0.94549 0.85657 0.86576 1.21371 1.26970 1.02297 1.07603 0.92253 1.25965 0.97606 1.01168 0.94467 1.70074 1.42829 1.30964 1.13299 0.85180 0.78340 0.77034 0.78822 1.19140 1.19798 1.18992 1.21914 0.98552 0.95674 0.89622 1.21604 0.95107 1.00778 0.97207 1.21200 0.94352 0.89555 0.95733 0.93955 1.58693 1.15235 1.15066 1.48823 0.90960 0.91653 0.93133 0.93217 0.93564 0.90553 0.91531 0.93692 0.94984 0.99922 1.00290 0.92072 0.92211 0.93269 0.92673 0.89832 0.83811 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.82 71.98 0.64 -2.05 16 2 C -0.09 -2.11 2.71 -10.74 -0.03 -2.14 16 3 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.08 2.13 4.43 86.32 0.38 2.52 16 5 N -0.55 -17.78 4.53 -896.35 -4.06 -21.84 16 6 C 0.07 2.31 5.39 86.30 0.47 2.77 16 7 C 0.06 2.48 6.13 71.98 0.44 2.92 16 8 O -0.39 -20.72 10.27 -148.98 -1.53 -22.25 16 9 C 0.21 12.48 5.69 71.24 0.41 12.89 16 10 C -0.54 -33.97 9.43 25.60 0.24 -33.73 16 11 H 0.06 3.69 7.81 -2.91 -0.02 3.66 16 12 C 0.01 0.36 5.46 84.65 0.46 0.82 16 13 N -0.93 -57.73 13.29 21.44 0.28 -57.44 16 14 Si 0.98 45.76 29.54 68.60 2.03 47.79 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 C 0.07 1.83 5.28 86.33 0.46 2.29 16 19 C -0.11 -2.46 5.76 30.65 0.18 -2.28 16 20 C 0.10 2.04 3.14 44.99 0.14 2.18 16 21 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 22 N -0.84 -12.91 7.89 -168.34 -1.33 -14.24 16 23 H 0.07 1.13 6.54 -2.39 -0.02 1.11 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 1.30 7.69 -2.39 -0.02 1.28 16 27 H 0.05 1.49 6.65 -2.39 -0.02 1.47 16 28 H 0.08 2.45 7.79 -2.39 -0.02 2.43 16 29 H 0.07 1.78 8.00 -2.38 -0.02 1.76 16 30 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.03 1.30 6.71 -2.39 -0.02 1.28 16 32 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 33 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 34 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.06 1.62 7.93 -2.39 -0.02 1.60 16 36 H 0.05 1.19 7.69 -2.39 -0.02 1.18 16 37 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.35 4.11 9.04 -89.70 -0.81 3.30 16 40 H 0.35 4.43 6.97 -89.70 -0.62 3.80 16 Total: -1.00 -70.06 313.47 -1.25 -71.31 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -0.42 Total: 10.48 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 3.78 Total: -13.81 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -5.10 Total: -93.51 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -1.53 Total: -22.25 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -70.06 -1.25 -71.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385182561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.677 kcal (2) G-P(sol) polarization free energy of solvation -70.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds