Wall clock time and date at job start Mon Mar 30 2020 04:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.53711 * 2 1 4 4 C 1.53039 * 109.49987 * 120.10121 * 2 1 3 5 5 N 1.46847 * 109.52201 * 179.12186 * 4 2 1 6 6 C 1.46901 * 111.00130 * 174.15841 * 5 4 2 7 7 C 1.52994 * 109.47113 * 190.25561 * 6 5 4 8 8 O 1.42900 * 109.47583 * 64.99636 * 7 6 5 9 9 C 1.42900 * 114.00474 * 179.97438 * 8 7 6 10 10 C 1.50690 * 109.47288 * 180.02562 * 9 8 7 11 11 H 1.08003 * 120.00582 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99902 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00349 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99797 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47228 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47218 * 120.00457 * 14 12 10 17 17 H 1.48507 * 109.47128 * 239.99751 * 14 12 10 18 18 C 1.46847 * 111.19664 * 298.25507 * 5 4 2 19 19 C 1.53037 * 109.52451 * 61.73860 * 18 5 4 20 20 C 1.53113 * 109.28102 * 300.82479 * 19 18 5 21 21 H 1.08998 * 109.52005 * 297.68186 * 20 19 18 22 22 N 1.46905 * 109.52258 * 177.55839 * 20 19 18 23 23 H 1.09000 * 109.47644 * 180.09720 * 1 2 3 24 24 H 1.08999 * 109.47390 * 300.10419 * 1 2 3 25 25 H 1.09006 * 109.47039 * 60.10029 * 1 2 3 26 26 H 1.08995 * 109.46886 * 59.10034 * 4 2 1 27 27 H 1.09001 * 109.45044 * 299.12674 * 4 2 1 28 28 H 1.09004 * 109.46897 * 310.25254 * 6 5 4 29 29 H 1.08999 * 109.47041 * 70.24846 * 6 5 4 30 30 H 1.09004 * 109.47309 * 184.99976 * 7 6 5 31 31 H 1.09004 * 109.47100 * 304.99536 * 7 6 5 32 32 H 1.09007 * 109.47032 * 300.00460 * 9 8 7 33 33 H 1.09002 * 109.46826 * 59.99712 * 9 8 7 34 34 H 0.97005 * 120.00446 * 179.97438 * 13 12 10 35 35 H 1.09006 * 109.46077 * 301.72706 * 18 5 4 36 36 H 1.08999 * 109.45397 * 181.75737 * 18 5 4 37 37 H 1.08998 * 109.50359 * 180.87610 * 19 18 5 38 38 H 1.09008 * 109.53208 * 60.78511 * 19 18 5 39 39 H 1.00901 * 110.99869 * 60.00156 * 22 20 19 40 40 H 1.00896 * 110.99543 * 183.95278 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0409 -0.7235 1.2481 5 7 3.5092 -0.7422 1.2380 6 6 4.0372 -1.3059 2.4875 7 6 5.5485 -1.0772 2.5517 8 8 5.8155 0.3246 2.6269 9 6 7.2057 0.6490 2.6918 10 6 7.3694 2.1450 2.7684 11 1 6.4989 2.7843 2.7680 12 6 8.6305 2.6977 2.8401 13 7 9.6905 1.9194 2.8411 14 14 8.8334 4.5523 2.9357 15 1 7.4964 5.1981 2.9178 16 1 9.5392 4.9089 4.1927 17 1 9.6262 5.0242 1.7720 18 6 4.0229 -1.4731 0.0725 19 6 3.5711 -0.7721 -1.2107 20 6 2.0412 -0.7239 -1.2487 21 1 1.6453 -1.7392 -1.2701 22 7 1.6025 -0.0005 -2.4497 23 1 -0.3634 -1.0276 0.0017 24 1 -0.3634 0.5154 0.8890 25 1 -0.3633 0.5123 -0.8909 26 1 1.6647 -1.7465 1.2545 27 1 1.6905 -0.2021 2.1388 28 1 3.5594 -0.8175 3.3369 29 1 3.8297 -2.3755 2.5197 30 1 5.9538 -1.5721 3.4343 31 1 6.0166 -1.4887 1.6574 32 1 7.6449 0.1899 3.5776 33 1 7.7084 0.2732 1.8007 34 1 10.5778 2.3083 2.8911 35 1 3.6374 -2.4926 0.0844 36 1 5.1120 -1.4962 0.1097 37 1 3.9395 -1.3235 -2.0757 38 1 3.9678 0.2431 -1.2304 39 1 1.9323 -0.4565 -3.2871 40 1 0.5987 0.1006 -2.4643 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385182563.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:52 Heat of formation + Delta-G solvation = -55.049290 kcal Electronic energy + Delta-G solvation = -18043.768764 eV Core-core repulsion = 15278.848911 eV Total energy + Delta-G solvation = -2764.919853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.41200 -36.79376 -35.10440 -32.65007 -32.39908 -30.74126 -28.49824 -26.80427 -25.94830 -23.08989 -22.39210 -22.19730 -20.41383 -19.54089 -16.32925 -16.20013 -15.87572 -15.55426 -15.29490 -14.83861 -14.36706 -14.14419 -14.03707 -13.49310 -13.00804 -12.97163 -12.78286 -12.25213 -12.07387 -11.88235 -11.51493 -11.27061 -11.02100 -10.84006 -10.77089 -10.70489 -10.62831 -10.30466 -10.12293 -9.86283 -8.98980 -8.77889 -8.71840 -8.07131 -7.98152 -6.03430 -4.03856 3.34791 3.41022 3.48626 4.02323 4.36840 4.42494 4.68107 4.80102 4.91018 5.04585 5.24384 5.33285 5.35125 5.41118 5.43795 5.48954 5.59686 5.67740 5.72187 5.75016 5.84405 5.97537 6.00043 6.08245 6.12504 6.24422 6.32842 6.37012 6.49036 7.07727 7.18650 7.31229 7.34252 7.35855 7.52136 7.89243 8.25446 8.70937 9.11681 9.60921 11.08393 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.004926 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.915212 B = 5682.449764 C = 6033.343731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.091 0.909 4 C 0.064 3.936 5 N -0.522 5.522 6 C 0.062 3.938 7 C 0.066 3.934 8 O -0.379 6.379 9 C 0.194 3.806 10 C -0.508 4.508 11 H 0.067 0.933 12 C 0.055 3.945 13 N -0.901 5.901 14 Si 0.906 3.094 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.056 3.944 19 C -0.110 4.110 20 C 0.098 3.902 21 H 0.026 0.974 22 N -0.845 5.845 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.024 0.976 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.001 0.999 33 H 0.002 0.998 34 H 0.262 0.738 35 H 0.023 0.977 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.338 0.662 40 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.578 -8.927 -6.954 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.110 0.890 4 C -0.064 4.064 5 N -0.247 5.247 6 C -0.066 4.066 7 C -0.012 4.012 8 O -0.298 6.298 9 C 0.119 3.881 10 C -0.546 4.546 11 H 0.085 0.915 12 C -0.146 4.146 13 N -0.541 5.541 14 Si 0.733 3.267 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.072 4.072 19 C -0.148 4.148 20 C -0.014 4.014 21 H 0.044 0.956 22 N -0.376 5.376 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.042 0.958 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.150 0.850 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.934 -7.685 -6.687 18.912 hybrid contribution -0.231 -1.107 -0.126 1.138 sum -16.165 -8.792 -6.813 19.622 Atomic orbital electron populations 1.21824 0.95488 1.01168 1.02079 1.21195 0.94518 1.01559 0.93058 0.89041 1.22102 0.87911 0.98059 0.98366 1.61753 1.06725 1.54313 1.01871 1.22120 0.95825 0.96246 0.92380 1.22264 0.93618 0.86647 0.98666 1.87954 1.28297 1.18863 1.94682 1.20174 0.76501 0.96406 0.94989 1.21111 0.92677 0.91029 1.49794 0.91459 1.24942 0.95436 0.98872 0.95330 1.69976 0.98055 1.35023 1.51044 0.86307 0.78281 0.84545 0.77528 1.19437 1.20949 1.20900 1.22109 1.00981 0.93835 0.90282 1.21592 0.94064 1.02892 0.96251 1.21389 0.95731 0.93921 0.90322 0.95585 1.58721 1.17338 1.57296 1.04210 0.93348 0.92254 0.92315 0.95770 0.90544 0.90110 0.94582 0.94402 0.94615 0.98085 0.97969 0.92846 0.95855 0.89891 0.92102 0.89618 0.84952 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.92 37.16 0.33 -1.03 16 2 C -0.08 -1.00 2.58 -90.54 -0.23 -1.24 16 3 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 4 C 0.06 0.83 4.74 -3.83 -0.02 0.81 16 5 N -0.52 -8.19 4.60 -234.67 -1.08 -9.27 16 6 C 0.06 0.97 5.34 -3.83 -0.02 0.95 16 7 C 0.07 1.27 6.00 37.15 0.22 1.49 16 8 O -0.38 -9.49 10.27 -35.23 -0.36 -9.85 16 9 C 0.19 5.49 5.69 36.00 0.20 5.69 16 10 C -0.51 -15.41 9.43 -34.45 -0.32 -15.74 16 11 H 0.07 2.05 7.81 -52.48 -0.41 1.64 16 12 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 14 Si 0.91 22.41 29.54 -169.99 -5.02 17.39 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 C 0.06 0.80 5.30 -3.83 -0.02 0.78 16 19 C -0.11 -1.44 5.67 -26.65 -0.15 -1.59 16 20 C 0.10 1.10 2.80 -67.59 -0.19 0.91 16 21 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 22 N -0.85 -8.44 9.24 -4.56 -0.04 -8.49 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.49 6.64 -51.93 -0.34 0.15 16 26 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.08 0.97 8.01 -51.93 -0.42 0.56 16 28 H 0.08 1.26 7.98 -51.93 -0.41 0.85 16 29 H 0.04 0.48 8.12 -51.93 -0.42 0.05 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.67 6.23 -51.93 -0.32 0.35 16 32 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 33 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 1.29 6.13 -51.93 -0.32 0.98 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.36 8.14 -51.92 -0.42 0.93 16 39 H 0.34 2.87 9.04 -39.29 -0.36 2.51 16 40 H 0.34 2.82 7.16 -39.29 -0.28 2.54 16 LS Contribution 315.20 15.07 4.75 4.75 Total: -1.00 -32.34 315.20 -8.39 -40.73 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -7.07 Total: -1.00 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -0.30 Total: -7.44 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.39 Total: -44.58 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.36 Total: -9.85 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.34 -8.39 -40.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385182563.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.321 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds