Wall clock time and date at job start Mon Mar 30 2020 04:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.53711 * 2 1 4 4 C 1.53039 * 109.49987 * 120.10121 * 2 1 3 5 5 N 1.46847 * 109.52201 * 179.12186 * 4 2 1 6 6 C 1.46901 * 111.00130 * 174.15841 * 5 4 2 7 7 C 1.52994 * 109.47113 * 190.25561 * 6 5 4 8 8 O 1.42900 * 109.47583 * 64.99636 * 7 6 5 9 9 C 1.42900 * 114.00474 * 179.97438 * 8 7 6 10 10 C 1.50690 * 109.47288 * 180.02562 * 9 8 7 11 11 H 1.08003 * 120.00582 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99902 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00349 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99797 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47228 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47218 * 120.00457 * 14 12 10 17 17 H 1.48507 * 109.47128 * 239.99751 * 14 12 10 18 18 C 1.46847 * 111.19664 * 298.25507 * 5 4 2 19 19 C 1.53037 * 109.52451 * 61.73860 * 18 5 4 20 20 C 1.53113 * 109.28102 * 300.82479 * 19 18 5 21 21 H 1.08998 * 109.52005 * 297.68186 * 20 19 18 22 22 N 1.46905 * 109.52258 * 177.55839 * 20 19 18 23 23 H 1.09000 * 109.47644 * 180.09720 * 1 2 3 24 24 H 1.08999 * 109.47390 * 300.10419 * 1 2 3 25 25 H 1.09006 * 109.47039 * 60.10029 * 1 2 3 26 26 H 1.08995 * 109.46886 * 59.10034 * 4 2 1 27 27 H 1.09001 * 109.45044 * 299.12674 * 4 2 1 28 28 H 1.09004 * 109.46897 * 310.25254 * 6 5 4 29 29 H 1.08999 * 109.47041 * 70.24846 * 6 5 4 30 30 H 1.09004 * 109.47309 * 184.99976 * 7 6 5 31 31 H 1.09004 * 109.47100 * 304.99536 * 7 6 5 32 32 H 1.09007 * 109.47032 * 300.00460 * 9 8 7 33 33 H 1.09002 * 109.46826 * 59.99712 * 9 8 7 34 34 H 0.97005 * 120.00446 * 179.97438 * 13 12 10 35 35 H 1.09006 * 109.46077 * 301.72706 * 18 5 4 36 36 H 1.08999 * 109.45397 * 181.75737 * 18 5 4 37 37 H 1.08998 * 109.50359 * 180.87610 * 19 18 5 38 38 H 1.09008 * 109.53208 * 60.78511 * 19 18 5 39 39 H 1.00901 * 110.99869 * 60.00156 * 22 20 19 40 40 H 1.00896 * 110.99543 * 183.95278 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0409 -0.7235 1.2481 5 7 3.5092 -0.7422 1.2380 6 6 4.0372 -1.3059 2.4875 7 6 5.5485 -1.0772 2.5517 8 8 5.8155 0.3246 2.6269 9 6 7.2057 0.6490 2.6918 10 6 7.3694 2.1450 2.7684 11 1 6.4989 2.7843 2.7680 12 6 8.6305 2.6977 2.8401 13 7 9.6905 1.9194 2.8411 14 14 8.8334 4.5523 2.9357 15 1 7.4964 5.1981 2.9178 16 1 9.5392 4.9089 4.1927 17 1 9.6262 5.0242 1.7720 18 6 4.0229 -1.4731 0.0725 19 6 3.5711 -0.7721 -1.2107 20 6 2.0412 -0.7239 -1.2487 21 1 1.6453 -1.7392 -1.2701 22 7 1.6025 -0.0005 -2.4497 23 1 -0.3634 -1.0276 0.0017 24 1 -0.3634 0.5154 0.8890 25 1 -0.3633 0.5123 -0.8909 26 1 1.6647 -1.7465 1.2545 27 1 1.6905 -0.2021 2.1388 28 1 3.5594 -0.8175 3.3369 29 1 3.8297 -2.3755 2.5197 30 1 5.9538 -1.5721 3.4343 31 1 6.0166 -1.4887 1.6574 32 1 7.6449 0.1899 3.5776 33 1 7.7084 0.2732 1.8007 34 1 10.5778 2.3083 2.8911 35 1 3.6374 -2.4926 0.0844 36 1 5.1120 -1.4962 0.1097 37 1 3.9395 -1.3235 -2.0757 38 1 3.9678 0.2431 -1.2304 39 1 1.9323 -0.4565 -3.2871 40 1 0.5987 0.1006 -2.4643 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385182563.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:52 Heat of formation + Delta-G solvation = -79.736546 kcal Electronic energy + Delta-G solvation = -18044.839284 eV Core-core repulsion = 15278.848911 eV Total energy + Delta-G solvation = -2765.990373 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.47854 -38.52557 -36.35811 -34.85876 -33.34357 -31.94448 -29.98768 -28.65621 -27.00190 -24.54754 -24.20648 -23.40117 -21.66527 -20.51612 -18.60744 -17.46456 -17.37766 -16.78395 -16.45189 -16.27842 -15.84313 -15.70494 -15.41946 -14.85937 -14.35672 -14.11950 -13.72873 -13.66650 -13.57338 -13.04141 -12.86243 -12.78877 -12.69863 -12.62979 -12.23789 -12.13354 -11.91442 -11.74691 -11.38138 -11.22861 -11.10794 -10.83805 -10.16164 -9.56444 -9.12030 -8.31282 -6.42986 1.39671 1.41433 1.56513 2.35994 2.90897 3.02309 3.25625 3.53512 3.75596 3.84319 4.07351 4.15641 4.24917 4.31021 4.39347 4.43942 4.55081 4.58315 4.63380 4.70107 4.77090 4.82504 4.83799 4.94977 4.97419 4.98319 5.17457 5.19705 5.27344 5.34810 5.48027 5.56745 5.98587 6.17941 6.26534 6.31371 6.58347 6.65842 6.87959 7.29420 8.81439 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.004926 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.915212 B = 5682.449764 C = 6033.343731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 H 0.056 0.944 4 C 0.066 3.934 5 N -0.554 5.554 6 C 0.071 3.929 7 C 0.056 3.944 8 O -0.395 6.395 9 C 0.210 3.790 10 C -0.545 4.545 11 H 0.058 0.942 12 C 0.007 3.993 13 N -0.931 5.931 14 Si 0.982 3.018 15 H -0.266 1.266 16 H -0.269 1.269 17 H -0.271 1.271 18 C 0.058 3.942 19 C -0.108 4.108 20 C 0.105 3.895 21 H 0.043 0.957 22 N -0.854 5.854 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.037 0.963 32 H -0.016 1.016 33 H -0.019 1.019 34 H 0.270 0.730 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.348 0.652 40 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.039 -9.074 -7.342 21.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 H 0.075 0.925 4 C -0.062 4.062 5 N -0.279 5.279 6 C -0.057 4.057 7 C -0.021 4.021 8 O -0.315 6.315 9 C 0.134 3.866 10 C -0.582 4.582 11 H 0.076 0.924 12 C -0.191 4.191 13 N -0.571 5.571 14 Si 0.805 3.195 15 H -0.190 1.190 16 H -0.194 1.194 17 H -0.196 1.196 18 C -0.070 4.070 19 C -0.146 4.146 20 C -0.006 4.006 21 H 0.061 0.939 22 N -0.387 5.387 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.002 0.998 33 H -0.002 1.002 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.161 0.839 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.417 -7.857 -7.083 20.378 hybrid contribution 0.225 -1.138 -0.026 1.160 sum -17.192 -8.995 -7.110 20.664 Atomic orbital electron populations 1.21765 0.93080 1.02336 1.02644 1.21155 0.96456 0.99467 0.93173 0.92525 1.22138 0.86083 0.99258 0.98725 1.61691 1.08712 1.55427 1.02106 1.22030 0.92765 0.98260 0.92641 1.22632 0.96749 0.83596 0.99163 1.87908 1.26034 1.22804 1.94726 1.19780 0.78087 0.95663 0.93023 1.21400 0.93135 0.92010 1.51671 0.92378 1.25946 0.94649 1.04588 0.93961 1.70074 0.98779 1.37552 1.50699 0.85150 0.78511 0.77466 0.78357 1.19028 1.19403 1.19604 1.22067 0.99651 0.95035 0.90265 1.21553 0.95765 1.00793 0.96493 1.21258 0.94101 0.94746 0.90544 0.93898 1.58644 1.18343 1.57479 1.04206 0.91779 0.92136 0.91417 0.93701 0.90822 0.90231 0.91156 0.93462 0.94456 0.99802 1.00169 0.92063 0.93527 0.92239 0.90481 0.93281 0.83878 0.83596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.92 71.98 0.64 -1.62 16 2 C -0.08 -1.89 2.58 -10.74 -0.03 -1.92 16 3 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 4 C 0.07 1.59 4.74 86.33 0.41 2.00 16 5 N -0.55 -17.12 4.60 -896.36 -4.13 -21.24 16 6 C 0.07 2.14 5.34 86.30 0.46 2.61 16 7 C 0.06 2.18 6.00 71.98 0.43 2.61 16 8 O -0.40 -20.49 10.27 -148.98 -1.53 -22.03 16 9 C 0.21 12.37 5.69 71.23 0.41 12.78 16 10 C -0.54 -33.95 9.43 25.60 0.24 -33.71 16 11 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 12 C 0.01 0.40 5.46 84.66 0.46 0.86 16 13 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 14 Si 0.98 45.96 29.54 68.60 2.03 47.98 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 18 C 0.06 1.61 5.30 86.33 0.46 2.07 16 19 C -0.11 -2.79 5.67 30.64 0.17 -2.61 16 20 C 0.10 2.19 2.80 44.99 0.13 2.32 16 21 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 22 N -0.85 -15.68 9.24 -168.35 -1.56 -17.24 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 0.97 6.64 -2.38 -0.02 0.95 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 1.80 8.01 -2.39 -0.02 1.78 16 28 H 0.08 2.42 7.98 -2.38 -0.02 2.40 16 29 H 0.07 1.67 8.12 -2.39 -0.02 1.65 16 30 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.04 1.44 6.23 -2.38 -0.01 1.42 16 32 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 33 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 34 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 35 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.06 1.90 6.13 -2.39 -0.01 1.88 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.35 5.26 9.04 -89.69 -0.81 4.45 16 40 H 0.35 5.06 7.16 -89.70 -0.64 4.42 16 Total: -1.00 -70.78 315.20 -1.56 -72.34 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -0.44 Total: 12.02 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 3.78 Total: -14.61 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -5.40 Total: -95.71 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -1.53 Total: -22.03 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -70.78 -1.56 -72.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385182563.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.394 kcal (2) G-P(sol) polarization free energy of solvation -70.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds