Wall clock time and date at job start Mon Mar 30 2020 04:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09009 * 109.50611 * 2 1 4 4 C 1.53049 * 109.48998 * 239.94784 * 2 1 3 5 5 N 1.46956 * 109.36623 * 181.62674 * 4 2 1 6 6 C 1.46965 * 110.87759 * 59.32104 * 5 4 2 7 7 C 1.53049 * 109.36462 * 300.67991 * 6 5 4 8 8 H 1.08991 * 109.48938 * 178.36930 * 7 6 5 9 9 C 1.53008 * 109.48643 * 298.43344 * 7 6 5 10 10 N 1.46955 * 109.36598 * 58.39941 * 7 6 5 11 11 C 1.46904 * 111.00167 * 176.81269 * 10 7 6 12 12 C 1.52996 * 109.47058 * 293.30066 * 11 10 7 13 13 O 1.42902 * 109.47196 * 69.28633 * 12 11 10 14 14 C 1.42904 * 114.00088 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47244 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00011 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99940 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99987 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99694 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47270 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47304 * 120.00070 * 19 17 15 22 22 H 1.48503 * 109.46856 * 239.99891 * 19 17 15 23 23 H 1.09005 * 109.47368 * 306.81925 * 1 2 3 24 24 H 1.09005 * 109.47588 * 66.82465 * 1 2 3 25 25 H 1.08999 * 109.46940 * 186.82527 * 1 2 3 26 26 H 1.08999 * 109.48848 * 61.66417 * 4 2 1 27 27 H 1.09001 * 109.50908 * 301.60734 * 4 2 1 28 28 H 1.00898 * 111.00358 * 183.18773 * 5 4 2 29 29 H 1.09003 * 109.48496 * 180.71135 * 6 5 4 30 30 H 1.08999 * 109.48910 * 60.65045 * 6 5 4 31 31 H 1.09007 * 109.46848 * 179.89074 * 9 7 6 32 32 H 1.08997 * 109.47253 * 299.89188 * 9 7 6 33 33 H 1.08999 * 109.47188 * 59.89543 * 9 7 6 34 34 H 1.08992 * 109.46987 * 173.29837 * 11 10 7 35 35 H 1.08994 * 109.46850 * 53.29698 * 11 10 7 36 36 H 1.08997 * 109.47473 * 189.28905 * 12 11 10 37 37 H 1.09007 * 109.47330 * 309.29154 * 12 11 10 38 38 H 1.08998 * 109.47254 * 300.00512 * 14 13 12 39 39 H 1.09003 * 109.46727 * 60.00453 * 14 13 12 40 40 H 0.96998 * 119.99681 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0406 -0.7225 -1.2488 5 7 3.5096 -0.7551 -1.2265 6 6 3.9999 -1.4490 -0.0274 7 6 3.4893 -0.7264 1.2214 8 1 3.8278 -1.2560 2.1119 9 6 4.0314 0.7042 1.2409 10 7 2.0203 -0.6938 1.1991 11 6 1.4888 -0.0739 2.4203 12 6 1.8007 -0.9669 3.6228 13 8 3.2068 -0.9500 3.8767 14 6 3.6068 -1.7563 4.9867 15 6 5.1007 -1.6639 5.1623 16 1 5.6861 -1.0504 4.4935 17 6 5.7201 -2.3626 6.1768 18 7 5.0073 -3.1101 6.9909 19 14 7.5717 -2.2474 6.3949 20 1 8.1374 -1.3484 5.3571 21 1 7.8786 -1.7037 7.7422 22 1 8.1712 -3.5992 6.2582 23 1 -0.3634 0.6159 0.8227 24 1 -0.3634 0.4044 -0.9448 25 1 -0.3633 -1.0204 0.1221 26 1 1.7021 -0.1928 -2.1393 27 1 1.6544 -1.7417 -1.2632 28 1 3.8747 -1.1808 -2.0653 29 1 5.0900 -1.4489 -0.0275 30 1 3.6361 -2.4764 -0.0274 31 1 3.6660 1.2192 2.1295 32 1 5.1210 0.6797 1.2575 33 1 3.6934 1.2331 0.3498 34 1 0.4095 0.0458 2.3268 35 1 1.9517 0.9025 2.5631 36 1 1.2688 -0.5957 4.4988 37 1 1.4823 -1.9875 3.4098 38 1 3.1124 -1.4011 5.8908 39 1 3.3258 -2.7933 4.8024 40 1 5.4430 -3.6013 7.7048 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385190018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:53 Heat of formation + Delta-G solvation = -39.343908 kcal Electronic energy + Delta-G solvation = -18751.973433 eV Core-core repulsion = 15987.734617 eV Total energy + Delta-G solvation = -2764.238817 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.63853 -36.70949 -34.40241 -32.98183 -32.60305 -29.90669 -27.57030 -26.71126 -26.41602 -24.10159 -22.32100 -21.62781 -21.11198 -18.29145 -16.60796 -16.38108 -15.87410 -15.23671 -15.08455 -14.72833 -14.35208 -14.30421 -13.70212 -13.31727 -12.98281 -12.69680 -12.23413 -12.19659 -11.86292 -11.67018 -11.39362 -11.30394 -11.16381 -10.92635 -10.81489 -10.76110 -10.41631 -10.31855 -10.14546 -9.75765 -9.06164 -8.74136 -8.38978 -8.11312 -7.85426 -6.10187 -4.11663 3.29197 3.35979 3.42012 4.14693 4.31383 4.36020 4.87906 5.00047 5.15944 5.20982 5.26646 5.42388 5.49951 5.54770 5.67087 5.71858 5.74792 5.84949 5.95546 5.97407 6.03624 6.10109 6.17671 6.20887 6.30942 6.36983 6.45461 6.75063 6.85704 7.10632 7.15145 7.35660 7.45843 7.53535 7.57469 7.80327 8.17012 8.58945 9.02307 9.53364 11.01386 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.032495 B = 0.005968 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.468962 B = 4690.348631 C = 5228.463206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 H 0.049 0.951 4 C 0.068 3.932 5 N -0.691 5.691 6 C 0.063 3.937 7 C 0.069 3.931 8 H 0.132 0.868 9 C -0.164 4.164 10 N -0.525 5.525 11 C 0.052 3.948 12 C 0.065 3.935 13 O -0.389 6.389 14 C 0.193 3.807 15 C -0.512 4.512 16 H 0.066 0.934 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.905 3.095 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.337 0.663 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.003 0.997 39 H 0.005 0.995 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.248 4.974 -14.359 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 H 0.067 0.933 4 C -0.062 4.062 5 N -0.321 5.321 6 C -0.066 4.066 7 C -0.038 4.038 8 H 0.150 0.850 9 C -0.223 4.223 10 N -0.250 5.250 11 C -0.076 4.076 12 C -0.013 4.013 13 O -0.310 6.310 14 C 0.119 3.881 15 C -0.550 4.550 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.153 0.847 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.021 0.979 39 H 0.023 0.977 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.207 5.096 -14.047 16.590 hybrid contribution 0.810 -0.316 0.249 0.904 sum -6.397 4.780 -13.797 15.942 Atomic orbital electron populations 1.21883 0.94772 1.02475 1.01328 1.21652 0.94467 0.96636 0.90654 0.93286 1.21961 0.88052 0.99064 0.97139 1.60526 1.08200 1.58334 1.05087 1.22082 0.99470 0.95360 0.89679 1.22228 0.85856 0.96480 0.99266 0.85033 1.22160 1.01277 0.98080 1.00772 1.62473 1.09153 1.52414 1.00950 1.22260 0.99200 0.96717 0.89384 1.22270 0.85487 0.98582 0.94942 1.87816 1.19655 1.71125 1.52359 1.20189 0.95596 0.89230 0.83057 1.21083 0.91418 1.28273 1.14207 0.91559 1.24940 0.98971 0.95089 0.95481 1.69973 1.35705 1.30038 1.18045 0.86327 0.84487 0.77901 0.78061 1.19480 1.20902 1.20880 0.92429 0.92515 0.91831 0.91133 0.94660 0.84654 0.90536 0.94677 0.92764 0.92768 0.92791 0.90211 0.93788 0.94246 0.93671 0.97896 0.97727 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.66 37.15 0.32 -1.23 16 2 C 0.07 0.97 2.18 -67.66 -0.15 0.82 16 3 H 0.05 0.69 6.35 -51.92 -0.33 0.36 16 4 C 0.07 0.80 6.00 -3.77 -0.02 0.78 16 5 N -0.69 -8.70 6.22 -113.63 -0.71 -9.40 16 6 C 0.06 0.94 6.15 -3.76 -0.02 0.92 16 7 C 0.07 1.18 2.50 -67.65 -0.17 1.01 16 8 H 0.13 2.75 5.15 -51.93 -0.27 2.48 16 9 C -0.16 -2.72 8.38 37.16 0.31 -2.41 16 10 N -0.52 -8.16 4.47 -218.58 -0.98 -9.13 16 11 C 0.05 0.81 5.09 -3.82 -0.02 0.79 16 12 C 0.07 1.22 6.12 37.16 0.23 1.44 16 13 O -0.39 -9.01 7.18 -35.23 -0.25 -9.26 16 14 C 0.19 5.23 5.69 36.00 0.20 5.43 16 15 C -0.51 -14.80 9.43 -34.44 -0.32 -15.13 16 16 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 19 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.06 0.59 6.54 -51.93 -0.34 0.25 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.34 3.50 8.90 -39.29 -0.35 3.15 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.96 6.34 -51.93 -0.33 0.63 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.84 5.94 -51.93 -0.31 0.54 16 34 H 0.08 1.05 5.86 -51.93 -0.30 0.75 16 35 H 0.04 0.72 6.08 -51.93 -0.32 0.40 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.00 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 304.52 15.07 4.59 4.59 Total: -1.00 -30.00 304.52 -8.11 -38.11 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.74 Total: 0.51 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 0.26 Total: -6.05 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.95 Total: -44.65 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.25 Total: -9.26 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.00 -8.11 -38.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385190018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.230 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds