Wall clock time and date at job start Mon Mar 30 2020 04:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09009 * 109.50611 * 2 1 4 4 C 1.53049 * 109.48998 * 239.94784 * 2 1 3 5 5 N 1.46956 * 109.36623 * 181.62674 * 4 2 1 6 6 C 1.46965 * 110.87759 * 59.32104 * 5 4 2 7 7 C 1.53049 * 109.36462 * 300.67991 * 6 5 4 8 8 H 1.08991 * 109.48938 * 178.36930 * 7 6 5 9 9 C 1.53008 * 109.48643 * 298.43344 * 7 6 5 10 10 N 1.46955 * 109.36598 * 58.39941 * 7 6 5 11 11 C 1.46904 * 111.00167 * 176.81269 * 10 7 6 12 12 C 1.52996 * 109.47058 * 293.30066 * 11 10 7 13 13 O 1.42902 * 109.47196 * 69.28633 * 12 11 10 14 14 C 1.42904 * 114.00088 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47244 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00011 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99940 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99987 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99694 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47270 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47304 * 120.00070 * 19 17 15 22 22 H 1.48503 * 109.46856 * 239.99891 * 19 17 15 23 23 H 1.09005 * 109.47368 * 306.81925 * 1 2 3 24 24 H 1.09005 * 109.47588 * 66.82465 * 1 2 3 25 25 H 1.08999 * 109.46940 * 186.82527 * 1 2 3 26 26 H 1.08999 * 109.48848 * 61.66417 * 4 2 1 27 27 H 1.09001 * 109.50908 * 301.60734 * 4 2 1 28 28 H 1.00898 * 111.00358 * 183.18773 * 5 4 2 29 29 H 1.09003 * 109.48496 * 180.71135 * 6 5 4 30 30 H 1.08999 * 109.48910 * 60.65045 * 6 5 4 31 31 H 1.09007 * 109.46848 * 179.89074 * 9 7 6 32 32 H 1.08997 * 109.47253 * 299.89188 * 9 7 6 33 33 H 1.08999 * 109.47188 * 59.89543 * 9 7 6 34 34 H 1.08992 * 109.46987 * 173.29837 * 11 10 7 35 35 H 1.08994 * 109.46850 * 53.29698 * 11 10 7 36 36 H 1.08997 * 109.47473 * 189.28905 * 12 11 10 37 37 H 1.09007 * 109.47330 * 309.29154 * 12 11 10 38 38 H 1.08998 * 109.47254 * 300.00512 * 14 13 12 39 39 H 1.09003 * 109.46727 * 60.00453 * 14 13 12 40 40 H 0.96998 * 119.99681 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0406 -0.7225 -1.2488 5 7 3.5096 -0.7551 -1.2265 6 6 3.9999 -1.4490 -0.0274 7 6 3.4893 -0.7264 1.2214 8 1 3.8278 -1.2560 2.1119 9 6 4.0314 0.7042 1.2409 10 7 2.0203 -0.6938 1.1991 11 6 1.4888 -0.0739 2.4203 12 6 1.8007 -0.9669 3.6228 13 8 3.2068 -0.9500 3.8767 14 6 3.6068 -1.7563 4.9867 15 6 5.1007 -1.6639 5.1623 16 1 5.6861 -1.0504 4.4935 17 6 5.7201 -2.3626 6.1768 18 7 5.0073 -3.1101 6.9909 19 14 7.5717 -2.2474 6.3949 20 1 8.1374 -1.3484 5.3571 21 1 7.8786 -1.7037 7.7422 22 1 8.1712 -3.5992 6.2582 23 1 -0.3634 0.6159 0.8227 24 1 -0.3634 0.4044 -0.9448 25 1 -0.3633 -1.0204 0.1221 26 1 1.7021 -0.1928 -2.1393 27 1 1.6544 -1.7417 -1.2632 28 1 3.8747 -1.1808 -2.0653 29 1 5.0900 -1.4489 -0.0275 30 1 3.6361 -2.4764 -0.0274 31 1 3.6660 1.2192 2.1295 32 1 5.1210 0.6797 1.2575 33 1 3.6934 1.2331 0.3498 34 1 0.4095 0.0458 2.3268 35 1 1.9517 0.9025 2.5631 36 1 1.2688 -0.5957 4.4988 37 1 1.4823 -1.9875 3.4098 38 1 3.1124 -1.4011 5.8908 39 1 3.3258 -2.7933 4.8024 40 1 5.4430 -3.6013 7.7048 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385190018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:53 Heat of formation + Delta-G solvation = -61.491542 kcal Electronic energy + Delta-G solvation = -18752.933827 eV Core-core repulsion = 15987.734617 eV Total energy + Delta-G solvation = -2765.199210 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.84875 -38.45482 -35.67965 -34.81521 -34.01563 -31.34686 -29.33483 -28.17853 -27.61770 -25.39012 -24.43517 -22.77023 -22.45273 -19.49351 -18.58088 -17.82853 -17.47913 -16.68887 -16.57939 -16.16404 -15.89076 -15.61355 -15.24143 -14.74071 -14.42434 -14.07211 -13.55267 -13.44410 -13.33907 -13.03674 -12.95750 -12.72252 -12.58046 -12.51097 -12.37247 -12.29289 -12.12189 -11.66347 -11.40861 -11.35831 -11.15087 -10.77273 -10.06863 -9.44936 -9.08511 -8.31187 -6.42656 1.39650 1.40589 1.55227 2.34615 2.94953 3.03057 3.21169 3.34566 3.91402 3.99569 4.12972 4.28214 4.33360 4.38698 4.44674 4.54522 4.62680 4.69437 4.75229 4.75575 4.80688 4.86214 4.91166 4.93578 4.96659 5.13210 5.19952 5.21732 5.32121 5.39821 5.55603 5.56849 5.97863 5.99286 6.17290 6.34959 6.54851 6.55847 6.84575 7.29235 8.81473 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.032495 B = 0.005968 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.468962 B = 4690.348631 C = 5228.463206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 H 0.043 0.957 4 C 0.068 3.932 5 N -0.689 5.689 6 C 0.070 3.930 7 C 0.069 3.931 8 H 0.089 0.911 9 C -0.152 4.152 10 N -0.533 5.533 11 C 0.061 3.939 12 C 0.057 3.943 13 O -0.392 6.392 14 C 0.209 3.791 15 C -0.539 4.539 16 H 0.062 0.938 17 C 0.006 3.994 18 N -0.932 5.932 19 Si 0.980 3.020 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.272 1.272 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.032 0.968 28 H 0.352 0.648 29 H 0.077 0.923 30 H 0.026 0.974 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.038 0.962 36 H 0.047 0.953 37 H 0.039 0.961 38 H -0.018 1.018 39 H -0.019 1.019 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.239 5.740 -15.957 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.036 4.036 3 H 0.061 0.939 4 C -0.062 4.062 5 N -0.321 5.321 6 C -0.059 4.059 7 C -0.040 4.040 8 H 0.107 0.893 9 C -0.211 4.211 10 N -0.258 5.258 11 C -0.066 4.066 12 C -0.020 4.020 13 O -0.312 6.312 14 C 0.134 3.866 15 C -0.577 4.577 16 H 0.080 0.920 17 C -0.192 4.192 18 N -0.571 5.571 19 Si 0.803 3.197 20 H -0.188 1.188 21 H -0.198 1.198 22 H -0.198 1.198 23 H 0.079 0.921 24 H 0.099 0.901 25 H 0.078 0.922 26 H 0.116 0.884 27 H 0.050 0.950 28 H 0.171 0.829 29 H 0.095 0.905 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.000 1.000 39 H -0.001 1.001 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.219 5.867 -15.672 18.225 hybrid contribution 0.710 -0.550 0.703 1.140 sum -6.509 5.317 -14.970 17.168 Atomic orbital electron populations 1.21852 0.92646 1.02512 1.02884 1.21807 0.96163 0.95967 0.89682 0.93941 1.22046 0.87354 0.99144 0.97622 1.60484 1.08939 1.57933 1.04791 1.21899 0.99465 0.94688 0.89891 1.22007 0.87111 0.96253 0.98612 0.89337 1.22036 1.00687 0.97848 1.00493 1.62468 1.08157 1.53195 1.01950 1.22221 1.00946 0.95249 0.88220 1.22557 0.83200 0.99287 0.96929 1.87851 1.22522 1.70161 1.50687 1.19773 0.95021 0.88341 0.83430 1.21371 0.92389 1.29029 1.14878 0.92023 1.25925 1.04429 0.94157 0.94686 1.70081 1.38075 1.30477 1.18509 0.85187 0.77747 0.78402 0.78396 1.18784 1.19805 1.19768 0.92067 0.90102 0.92230 0.88391 0.94985 0.82935 0.90502 0.95600 0.94376 0.93462 0.91508 0.87080 0.94423 0.93478 0.94230 1.00006 1.00083 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.66 71.98 0.62 -1.92 16 2 C 0.07 1.70 2.18 44.92 0.10 1.80 16 3 H 0.04 1.08 6.35 -2.38 -0.02 1.07 16 4 C 0.07 1.42 6.00 86.31 0.52 1.94 16 5 N -0.69 -15.95 6.22 -513.42 -3.19 -19.14 16 6 C 0.07 2.05 6.15 86.31 0.53 2.58 16 7 C 0.07 2.35 2.50 44.92 0.11 2.46 16 8 H 0.09 3.86 5.15 -2.39 -0.01 3.85 16 9 C -0.15 -5.03 8.38 71.98 0.60 -4.42 16 10 N -0.53 -16.16 4.47 -845.45 -3.78 -19.94 16 11 C 0.06 1.87 5.09 86.30 0.44 2.31 16 12 C 0.06 2.20 6.12 71.98 0.44 2.64 16 13 O -0.39 -18.91 7.18 -148.98 -1.07 -19.98 16 14 C 0.21 11.84 5.69 71.24 0.41 12.24 16 15 C -0.54 -32.08 9.43 25.60 0.24 -31.83 16 16 H 0.06 3.64 7.81 -2.91 -0.02 3.61 16 17 C 0.01 0.36 5.46 84.66 0.46 0.83 16 18 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 19 Si 0.98 44.72 29.54 68.60 2.03 46.75 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H 0.06 1.06 6.54 -2.38 -0.02 1.04 16 24 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.35 6.47 8.90 -89.70 -0.80 5.67 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.04 1.35 6.34 -2.38 -0.02 1.34 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 2.01 5.94 -2.39 -0.01 2.00 16 34 H 0.11 2.71 5.86 -2.39 -0.01 2.69 16 35 H 0.04 1.22 6.08 -2.39 -0.01 1.20 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 38 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 39 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 40 H 0.27 15.14 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -65.52 304.52 -1.04 -66.56 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.21 Total: 13.37 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 4.47 Total: -11.37 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -6.69 Total: -95.33 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -1.07 Total: -19.98 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.52 -1.04 -66.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385190018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.068 kcal (2) G-P(sol) polarization free energy of solvation -65.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds