Wall clock time and date at job start Mon Mar 30 2020 04:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.50158 * 2 1 4 4 C 1.53049 * 109.48423 * 239.94801 * 2 1 3 5 5 N 1.46962 * 109.36090 * 181.62862 * 4 2 1 6 6 C 1.46961 * 110.87890 * 59.31833 * 5 4 2 7 7 C 1.53050 * 109.36634 * 300.68322 * 6 5 4 8 8 H 1.08999 * 109.48602 * 298.42663 * 7 6 5 9 9 C 1.53006 * 109.48534 * 178.36766 * 7 6 5 10 10 N 1.46954 * 109.36504 * 58.40035 * 7 6 5 11 11 C 1.46902 * 110.99905 * 176.81138 * 10 7 6 12 12 C 1.53001 * 109.47132 * 63.26450 * 11 10 7 13 13 O 1.42906 * 109.46937 * 68.45505 * 12 11 10 14 14 C 1.42897 * 113.99982 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47260 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99852 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99947 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00240 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99840 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46877 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46873 * 120.00152 * 19 17 15 22 22 H 1.48496 * 109.46974 * 240.00233 * 19 17 15 23 23 H 1.08993 * 109.47116 * 305.57454 * 1 2 3 24 24 H 1.08991 * 109.47463 * 65.58058 * 1 2 3 25 25 H 1.09004 * 109.46654 * 185.58123 * 1 2 3 26 26 H 1.09004 * 109.49120 * 61.66773 * 4 2 1 27 27 H 1.08999 * 109.49176 * 301.59296 * 4 2 1 28 28 H 1.00905 * 110.99872 * 295.45880 * 5 4 2 29 29 H 1.09005 * 109.48505 * 60.65113 * 6 5 4 30 30 H 1.08999 * 109.48730 * 180.70958 * 6 5 4 31 31 H 1.08998 * 109.46840 * 59.99992 * 9 7 6 32 32 H 1.09003 * 109.46849 * 180.02562 * 9 7 6 33 33 H 1.08997 * 109.46684 * 299.99830 * 9 7 6 34 34 H 1.08997 * 109.47061 * 183.26346 * 11 10 7 35 35 H 1.08997 * 109.46749 * 303.26444 * 11 10 7 36 36 H 1.08992 * 109.47118 * 188.45677 * 12 11 10 37 37 H 1.08995 * 109.47310 * 308.46133 * 12 11 10 38 38 H 1.09001 * 109.47070 * 300.00924 * 14 13 12 39 39 H 1.08999 * 109.46961 * 59.99997 * 14 13 12 40 40 H 0.96996 * 120.00241 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7226 -1.2489 5 7 3.5097 -0.7552 -1.2266 6 6 4.0000 -1.4490 -0.0274 7 6 3.4894 -0.7265 1.2214 8 1 3.8756 0.2927 1.2353 9 6 3.9645 -1.4700 2.4714 10 7 2.0203 -0.6939 1.1991 11 6 1.4889 -0.0741 2.4203 12 6 1.9434 1.3852 2.4909 13 8 1.2988 2.1353 1.4595 14 6 1.6556 3.5188 1.4374 15 6 0.9211 4.2093 0.3173 16 1 0.2486 3.6478 -0.3143 17 6 1.1067 5.5580 0.0995 18 7 1.9252 6.2419 0.8688 19 14 0.1956 6.4141 -1.2886 20 1 -0.6583 5.4299 -2.0012 21 1 -0.6561 7.4944 -0.7294 22 1 1.1764 6.9984 -2.2382 23 1 -0.3633 0.5978 0.8358 24 1 -0.3634 0.4248 -0.9356 25 1 -0.3633 -1.0229 0.1000 26 1 1.7022 -0.1928 -2.1394 27 1 1.6544 -1.7418 -1.2628 28 1 3.8930 0.1762 -1.2875 29 1 3.6361 -2.4765 -0.0275 30 1 5.0900 -1.4490 -0.0275 31 1 5.0541 -1.4957 2.4866 32 1 3.6003 -0.9555 3.3606 33 1 3.5772 -2.4888 2.4572 34 1 0.3998 -0.1150 2.4041 35 1 1.8599 -0.6128 3.2921 36 1 1.6785 1.8015 3.4627 37 1 3.0238 1.4361 2.3560 38 1 1.3845 3.9792 2.3875 39 1 2.7301 3.6144 1.2810 40 1 2.0556 7.1908 0.7158 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385190022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:57 Heat of formation + Delta-G solvation = -42.443880 kcal Electronic energy + Delta-G solvation = -19038.899362 eV Core-core repulsion = 16274.526121 eV Total energy + Delta-G solvation = -2764.373241 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.78688 -36.71096 -34.33096 -33.29719 -32.68237 -29.61132 -27.75986 -26.75630 -26.25964 -23.86170 -22.41813 -21.71849 -20.86987 -19.22109 -16.49174 -16.15242 -16.08339 -15.56512 -15.35359 -14.71564 -14.25656 -13.91231 -13.66517 -13.14594 -12.79809 -12.59885 -12.24247 -12.11034 -11.67400 -11.55535 -11.45725 -11.37714 -11.29894 -10.99452 -10.84164 -10.80678 -10.71962 -10.52814 -10.24684 -10.14285 -9.15972 -8.87205 -8.27423 -8.25238 -7.72001 -6.17032 -4.19273 3.24705 3.31691 3.37374 4.06658 4.29831 4.49142 4.82576 4.98763 5.19779 5.20578 5.27338 5.37408 5.53901 5.56802 5.66714 5.68758 5.71887 5.82416 5.89416 5.95415 6.00173 6.08829 6.13083 6.20860 6.24613 6.34086 6.45186 6.76457 6.81941 7.02961 7.11923 7.33070 7.37415 7.46907 7.54363 7.72680 8.07834 8.47360 8.93948 9.46219 10.94474 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027488 B = 0.006702 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.365272 B = 4176.631101 C = 4479.755094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.035 3.965 3 H 0.088 0.912 4 C 0.063 3.937 5 N -0.690 5.690 6 C 0.068 3.932 7 C 0.036 3.964 8 H 0.044 0.956 9 C -0.142 4.142 10 N -0.521 5.521 11 C 0.051 3.949 12 C 0.024 3.976 13 O -0.382 6.382 14 C 0.193 3.807 15 C -0.512 4.512 16 H 0.067 0.933 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.906 3.094 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.068 0.932 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.340 0.660 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.035 0.965 38 H 0.003 0.997 39 H 0.000 1.000 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.397 -14.006 1.112 14.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.074 4.074 3 H 0.105 0.895 4 C -0.067 4.067 5 N -0.317 5.317 6 C -0.062 4.062 7 C -0.075 4.075 8 H 0.062 0.938 9 C -0.200 4.200 10 N -0.246 5.246 11 C -0.077 4.077 12 C -0.055 4.055 13 O -0.302 6.302 14 C 0.119 3.881 15 C -0.551 4.551 16 H 0.085 0.915 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.733 3.267 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.157 0.843 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.021 0.979 39 H 0.018 0.982 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.221 -14.967 0.538 15.141 hybrid contribution -0.057 2.398 0.466 2.443 sum 2.165 -12.569 1.005 12.794 Atomic orbital electron populations 1.21657 0.94132 1.00454 1.02537 1.22634 0.96763 0.98452 0.89502 0.89474 1.22195 0.86941 1.00816 0.96751 1.60819 1.08383 1.23623 1.38889 1.22095 0.98959 0.98525 0.86656 1.22422 0.89225 0.98725 0.97098 0.93809 1.21819 1.00379 1.00856 0.96970 1.62443 1.06728 1.53040 1.02394 1.22371 1.01386 0.90967 0.92954 1.22996 0.96473 0.93526 0.92532 1.87951 1.68398 1.23395 1.50493 1.20189 0.95007 0.75965 0.96978 1.21052 1.26156 0.93368 1.14490 0.91500 1.24953 0.95502 0.97087 0.96919 1.69967 1.36451 1.08507 1.38798 0.86313 0.79505 0.79395 0.81504 1.19425 1.20831 1.20816 0.91324 0.92761 0.93627 0.90605 0.91014 0.84262 0.90526 0.90918 0.92484 0.92540 0.91934 0.89772 0.90088 0.94395 0.94663 0.97945 0.98169 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.35 37.16 0.31 -1.78 16 2 C 0.04 0.58 1.91 -67.65 -0.13 0.45 16 3 H 0.09 1.77 5.53 -51.93 -0.29 1.48 16 4 C 0.06 0.92 6.00 -3.76 -0.02 0.90 16 5 N -0.69 -9.70 6.91 -113.63 -0.79 -10.49 16 6 C 0.07 0.86 6.00 -3.76 -0.02 0.84 16 7 C 0.04 0.48 2.16 -67.65 -0.15 0.34 16 8 H 0.04 0.70 6.38 -51.93 -0.33 0.37 16 9 C -0.14 -1.59 8.87 37.16 0.33 -1.26 16 10 N -0.52 -7.77 4.55 -218.57 -0.99 -8.76 16 11 C 0.05 0.77 5.17 -3.82 -0.02 0.75 16 12 C 0.02 0.43 5.74 37.16 0.21 0.65 16 13 O -0.38 -8.59 5.77 -35.23 -0.20 -8.80 16 14 C 0.19 5.15 5.69 36.00 0.20 5.35 16 15 C -0.51 -14.65 9.43 -34.44 -0.32 -14.98 16 16 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 19 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H 0.07 1.23 5.62 -51.93 -0.29 0.94 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.34 4.92 8.89 -39.29 -0.35 4.57 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.63 6.29 -51.93 -0.33 0.31 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.30 6.35 -51.93 -0.33 0.97 16 35 H 0.08 1.05 6.07 -51.93 -0.32 0.73 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.65 6.16 -51.93 -0.32 0.33 16 38 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 39 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 303.12 15.07 4.57 4.57 Total: -1.00 -29.33 303.12 -8.15 -37.48 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.75 Total: 2.58 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 0.29 Total: -7.22 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -1.04 Total: -45.18 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.20 Total: -8.80 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.33 -8.15 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385190022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.968 kcal (2) G-P(sol) polarization free energy of solvation -29.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds