Wall clock time and date at job start Mon Mar 30 2020 04:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.50158 * 2 1 4 4 C 1.53049 * 109.48423 * 239.94801 * 2 1 3 5 5 N 1.46962 * 109.36090 * 181.62862 * 4 2 1 6 6 C 1.46961 * 110.87890 * 59.31833 * 5 4 2 7 7 C 1.53050 * 109.36634 * 300.68322 * 6 5 4 8 8 H 1.08999 * 109.48602 * 298.42663 * 7 6 5 9 9 C 1.53006 * 109.48534 * 178.36766 * 7 6 5 10 10 N 1.46954 * 109.36504 * 58.40035 * 7 6 5 11 11 C 1.46902 * 110.99905 * 176.81138 * 10 7 6 12 12 C 1.53001 * 109.47132 * 63.26450 * 11 10 7 13 13 O 1.42906 * 109.46937 * 68.45505 * 12 11 10 14 14 C 1.42897 * 113.99982 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47260 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99852 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99947 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00240 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99840 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46877 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46873 * 120.00152 * 19 17 15 22 22 H 1.48496 * 109.46974 * 240.00233 * 19 17 15 23 23 H 1.08993 * 109.47116 * 305.57454 * 1 2 3 24 24 H 1.08991 * 109.47463 * 65.58058 * 1 2 3 25 25 H 1.09004 * 109.46654 * 185.58123 * 1 2 3 26 26 H 1.09004 * 109.49120 * 61.66773 * 4 2 1 27 27 H 1.08999 * 109.49176 * 301.59296 * 4 2 1 28 28 H 1.00905 * 110.99872 * 295.45880 * 5 4 2 29 29 H 1.09005 * 109.48505 * 60.65113 * 6 5 4 30 30 H 1.08999 * 109.48730 * 180.70958 * 6 5 4 31 31 H 1.08998 * 109.46840 * 59.99992 * 9 7 6 32 32 H 1.09003 * 109.46849 * 180.02562 * 9 7 6 33 33 H 1.08997 * 109.46684 * 299.99830 * 9 7 6 34 34 H 1.08997 * 109.47061 * 183.26346 * 11 10 7 35 35 H 1.08997 * 109.46749 * 303.26444 * 11 10 7 36 36 H 1.08992 * 109.47118 * 188.45677 * 12 11 10 37 37 H 1.08995 * 109.47310 * 308.46133 * 12 11 10 38 38 H 1.09001 * 109.47070 * 300.00924 * 14 13 12 39 39 H 1.08999 * 109.46961 * 59.99997 * 14 13 12 40 40 H 0.96996 * 120.00241 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7226 -1.2489 5 7 3.5097 -0.7552 -1.2266 6 6 4.0000 -1.4490 -0.0274 7 6 3.4894 -0.7265 1.2214 8 1 3.8756 0.2927 1.2353 9 6 3.9645 -1.4700 2.4714 10 7 2.0203 -0.6939 1.1991 11 6 1.4889 -0.0741 2.4203 12 6 1.9434 1.3852 2.4909 13 8 1.2988 2.1353 1.4595 14 6 1.6556 3.5188 1.4374 15 6 0.9211 4.2093 0.3173 16 1 0.2486 3.6478 -0.3143 17 6 1.1067 5.5580 0.0995 18 7 1.9252 6.2419 0.8688 19 14 0.1956 6.4141 -1.2886 20 1 -0.6583 5.4299 -2.0012 21 1 -0.6561 7.4944 -0.7294 22 1 1.1764 6.9984 -2.2382 23 1 -0.3633 0.5978 0.8358 24 1 -0.3634 0.4248 -0.9356 25 1 -0.3633 -1.0229 0.1000 26 1 1.7022 -0.1928 -2.1394 27 1 1.6544 -1.7418 -1.2628 28 1 3.8930 0.1762 -1.2875 29 1 3.6361 -2.4765 -0.0275 30 1 5.0900 -1.4490 -0.0275 31 1 5.0541 -1.4957 2.4866 32 1 3.6003 -0.9555 3.3606 33 1 3.5772 -2.4888 2.4572 34 1 0.3998 -0.1150 2.4041 35 1 1.8599 -0.6128 3.2921 36 1 1.6785 1.8015 3.4627 37 1 3.0238 1.4361 2.3560 38 1 1.3845 3.9792 2.3875 39 1 2.7301 3.6144 1.2810 40 1 2.0556 7.1908 0.7158 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385190022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:56 Heat of formation + Delta-G solvation = -64.097611 kcal Electronic energy + Delta-G solvation = -19039.838338 eV Core-core repulsion = 16274.526121 eV Total energy + Delta-G solvation = -2765.312218 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.04250 -38.40052 -35.69586 -34.80646 -34.43442 -31.01889 -29.42374 -28.35526 -27.40434 -25.21066 -24.50644 -22.95956 -22.06625 -20.50872 -18.63490 -17.65926 -17.52424 -16.95606 -16.67967 -16.32424 -15.85049 -15.54594 -15.12707 -14.51162 -14.05774 -13.90567 -13.85755 -13.43459 -13.17024 -12.94705 -12.88563 -12.71110 -12.62044 -12.59215 -12.41795 -12.32617 -12.07555 -11.98809 -11.81289 -11.51541 -11.27245 -10.86778 -10.22274 -9.44586 -9.04185 -8.36184 -6.48366 1.36957 1.37665 1.52347 2.30319 2.83240 2.98169 3.18287 3.39004 3.91213 3.99298 4.08981 4.15919 4.26305 4.35180 4.38879 4.48376 4.51640 4.62101 4.68187 4.76488 4.81052 4.84027 4.93939 4.96318 5.02555 5.09692 5.13456 5.15435 5.30966 5.41695 5.50987 5.51257 5.91736 5.99322 6.11177 6.22976 6.36022 6.47819 6.76484 7.23808 8.76419 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027488 B = 0.006702 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.365272 B = 4176.631101 C = 4479.755094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.039 3.961 3 H 0.044 0.956 4 C 0.070 3.930 5 N -0.692 5.692 6 C 0.071 3.929 7 C 0.034 3.966 8 H 0.015 0.985 9 C -0.136 4.136 10 N -0.513 5.513 11 C 0.059 3.941 12 C 0.018 3.982 13 O -0.382 6.382 14 C 0.211 3.789 15 C -0.538 4.538 16 H 0.063 0.937 17 C 0.006 3.994 18 N -0.933 5.933 19 Si 0.980 3.020 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.273 1.273 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.335 0.665 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.040 0.960 37 H 0.031 0.969 38 H -0.022 1.022 39 H -0.025 1.025 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 -15.416 0.567 15.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.071 4.071 3 H 0.062 0.938 4 C -0.060 4.060 5 N -0.319 5.319 6 C -0.059 4.059 7 C -0.076 4.076 8 H 0.033 0.967 9 C -0.194 4.194 10 N -0.238 5.238 11 C -0.069 4.069 12 C -0.060 4.060 13 O -0.302 6.302 14 C 0.135 3.865 15 C -0.575 4.575 16 H 0.082 0.918 17 C -0.192 4.192 18 N -0.572 5.572 19 Si 0.803 3.197 20 H -0.186 1.186 21 H -0.198 1.198 22 H -0.198 1.198 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.152 0.848 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.129 0.871 36 H 0.058 0.942 37 H 0.049 0.951 38 H -0.004 1.004 39 H -0.007 1.007 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.009 -16.405 0.006 16.528 hybrid contribution 0.068 2.780 0.696 2.867 sum 2.078 -13.625 0.702 13.800 Atomic orbital electron populations 1.21583 0.93995 1.01146 1.01423 1.22502 0.96868 0.96499 0.91209 0.93785 1.22123 0.87354 1.00946 0.95622 1.60853 1.07921 1.23355 1.39737 1.22172 1.00001 0.98357 0.85394 1.22515 0.88142 0.97766 0.99184 0.96658 1.21785 1.01483 1.00880 0.95241 1.62518 1.07704 1.51868 1.01687 1.22423 1.01420 0.88696 0.94341 1.23282 0.96196 0.95120 0.91428 1.87976 1.68753 1.21314 1.52132 1.19741 0.93185 0.78175 0.95358 1.21340 1.26746 0.94228 1.15230 0.91830 1.25947 0.96099 0.97637 0.99539 1.70077 1.37550 1.09128 1.40453 0.85182 0.78335 0.78191 0.78024 1.18602 1.19791 1.19785 0.93523 0.93066 0.91610 0.90806 0.89930 0.84837 0.89689 0.89193 0.90872 0.92693 0.90765 0.89941 0.87055 0.94186 0.95068 1.00395 1.00708 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.93 8.35 71.99 0.60 -3.33 16 2 C 0.04 1.27 1.91 44.92 0.09 1.35 16 3 H 0.04 1.85 5.53 -2.39 -0.01 1.84 16 4 C 0.07 1.97 6.00 86.31 0.52 2.49 16 5 N -0.69 -18.74 6.91 -513.40 -3.55 -22.29 16 6 C 0.07 1.65 6.00 86.31 0.52 2.17 16 7 C 0.03 0.88 2.16 44.92 0.10 0.98 16 8 H 0.02 0.50 6.38 -2.39 -0.02 0.48 16 9 C -0.14 -2.68 8.87 71.98 0.64 -2.04 16 10 N -0.51 -14.69 4.55 -845.41 -3.85 -18.53 16 11 C 0.06 1.73 5.17 86.30 0.45 2.17 16 12 C 0.02 0.68 5.74 71.98 0.41 1.09 16 13 O -0.38 -17.85 5.77 -148.98 -0.86 -18.71 16 14 C 0.21 11.77 5.69 71.23 0.41 12.18 16 15 C -0.54 -31.59 9.43 25.60 0.24 -31.35 16 16 H 0.06 3.69 7.81 -2.91 -0.02 3.66 16 17 C 0.01 0.35 5.46 84.66 0.46 0.81 16 18 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 19 Si 0.98 44.31 29.54 68.60 2.03 46.34 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H 0.05 1.68 5.62 -2.39 -0.01 1.66 16 24 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.34 9.68 8.89 -89.69 -0.80 8.89 16 29 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.10 6.29 -2.39 -0.02 1.08 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 2.47 6.35 -2.39 -0.02 2.45 16 35 H 0.11 2.61 6.07 -2.39 -0.01 2.59 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.03 1.19 6.16 -2.39 -0.01 1.17 16 38 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 39 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 40 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -63.84 303.12 -1.30 -65.14 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.22 Total: 17.54 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 4.43 Total: -13.48 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -7.11 Total: -96.84 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.86 Total: -18.71 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -63.84 -1.30 -65.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385190022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.045 kcal (2) G-P(sol) polarization free energy of solvation -63.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds