Wall clock time and date at job start Mon Mar 30 2020 04:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.48395 * 2 1 4 4 C 1.53046 * 109.49133 * 120.04139 * 2 1 3 5 5 N 1.46955 * 109.36691 * 61.56934 * 4 2 1 6 6 C 1.46957 * 110.87992 * 59.31585 * 5 4 2 7 7 C 1.53046 * 109.36724 * 300.68396 * 6 5 4 8 8 H 1.09004 * 109.48976 * 298.41112 * 7 6 5 9 9 C 1.52996 * 109.49085 * 178.36742 * 7 6 5 10 10 N 1.46955 * 109.48863 * 239.95852 * 2 1 3 11 11 C 1.46896 * 111.00160 * 63.21833 * 10 2 1 12 12 C 1.52998 * 109.47041 * 73.82579 * 11 10 2 13 13 O 1.42902 * 109.46985 * 64.03316 * 12 11 10 14 14 C 1.42903 * 113.99923 * 175.05170 * 13 12 11 15 15 C 1.50700 * 109.47153 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00078 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99889 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99951 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99754 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47583 * 59.99749 * 19 17 15 21 21 H 1.48507 * 109.47069 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47042 * 299.99643 * 19 17 15 23 23 H 1.09005 * 109.47314 * 299.99611 * 1 2 3 24 24 H 1.08999 * 109.46770 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47446 * 60.00509 * 1 2 3 26 26 H 1.09000 * 109.48930 * 181.53604 * 4 2 1 27 27 H 1.09001 * 109.48771 * 301.59953 * 4 2 1 28 28 H 1.00894 * 111.00312 * 183.19181 * 5 4 2 29 29 H 1.08997 * 109.48388 * 60.65339 * 6 5 4 30 30 H 1.08998 * 109.48567 * 180.69066 * 6 5 4 31 31 H 1.08996 * 109.47425 * 52.52683 * 9 7 6 32 32 H 1.09001 * 109.47442 * 172.53141 * 9 7 6 33 33 H 1.09010 * 109.46954 * 292.52964 * 9 7 6 34 34 H 1.09002 * 109.46748 * 193.82629 * 11 10 2 35 35 H 1.08998 * 109.47009 * 313.82778 * 11 10 2 36 36 H 1.09006 * 109.46899 * 184.02390 * 12 11 10 37 37 H 1.08996 * 109.47360 * 304.02521 * 12 11 10 38 38 H 1.08998 * 109.47178 * 299.99665 * 14 13 12 39 39 H 1.08998 * 109.46960 * 59.99447 * 14 13 12 40 40 H 0.96996 * 119.99463 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0277 0.0000 4 6 2.0407 -0.7223 1.2489 5 7 1.5811 -2.1179 1.2269 6 6 2.0713 -2.8120 0.0279 7 6 1.5606 -2.0897 -1.2210 8 1 0.4710 -2.1138 -1.2351 9 6 2.1027 -2.7859 -2.4709 10 7 2.0203 -0.6935 -1.1992 11 6 1.6134 0.0146 -2.4202 12 6 2.4517 1.2849 -2.5764 13 8 3.8237 0.9304 -2.7611 14 6 4.6804 2.0424 -3.0291 15 6 6.0956 1.5553 -3.2050 16 1 6.3185 0.5019 -3.1210 17 6 7.1056 2.4544 -3.4742 18 7 6.8339 3.7371 -3.5779 19 14 8.8597 1.8506 -3.6930 20 1 8.9167 0.8963 -4.8292 21 1 9.7500 3.0062 -3.9713 22 1 9.3072 1.1695 -2.4516 23 1 -0.3634 0.5138 0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 -0.8900 26 1 3.1303 -0.6985 1.2628 27 1 1.6544 -0.2262 2.1394 28 1 1.8605 -2.6040 2.0658 29 1 3.1613 -2.8119 0.0279 30 1 1.7077 -3.8395 0.0284 31 1 1.8764 -3.8509 -2.4206 32 1 1.6358 -2.3567 -3.3574 33 1 3.1825 -2.6462 -2.5252 34 1 1.7688 -0.6319 -3.2840 35 1 0.5589 0.2815 -2.3511 36 1 2.1020 1.8468 -3.4426 37 1 2.3522 1.8983 -1.6810 38 1 4.3521 2.5427 -3.9401 39 1 4.6385 2.7426 -2.1948 40 1 7.5444 4.3695 -3.7677 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385190025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:00 Heat of formation + Delta-G solvation = -38.267876 kcal Electronic energy + Delta-G solvation = -18486.707594 eV Core-core repulsion = 15722.515437 eV Total energy + Delta-G solvation = -2764.192156 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.74683 -36.58149 -34.49404 -33.15267 -32.61430 -29.90384 -27.64442 -26.68463 -26.59579 -24.28440 -22.22625 -21.76118 -21.12357 -18.38425 -16.71476 -16.32809 -15.91229 -15.43815 -14.84521 -14.77892 -14.52045 -14.13484 -13.91584 -13.57161 -13.04394 -12.77280 -12.34356 -12.18414 -11.87569 -11.72571 -11.58053 -11.46679 -11.20593 -10.94344 -10.79905 -10.75735 -10.60382 -10.25496 -10.14127 -9.90211 -9.02950 -8.72229 -8.50266 -8.06946 -7.88729 -6.05204 -4.05961 3.35416 3.37667 3.41979 4.02325 4.20618 4.40038 4.84900 4.89221 5.07671 5.19899 5.25928 5.31075 5.37876 5.45860 5.57475 5.61503 5.65985 5.70929 5.78986 5.83776 5.90467 5.95996 6.08529 6.10875 6.17756 6.21934 6.34019 6.43784 6.51437 6.92101 7.17824 7.23485 7.41128 7.44348 7.51453 7.86505 8.24123 8.70733 9.09191 9.58642 11.06505 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028970 B = 0.005391 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.295862 B = 5192.510110 C = 5377.237174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.079 3.921 3 H 0.087 0.913 4 C 0.064 3.936 5 N -0.691 5.691 6 C 0.064 3.936 7 C 0.082 3.918 8 H 0.046 0.954 9 C -0.148 4.148 10 N -0.512 5.512 11 C 0.050 3.950 12 C 0.070 3.930 13 O -0.379 6.379 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.065 0.935 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.907 3.093 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.339 0.661 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.001 0.999 39 H 0.002 0.998 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 -10.295 7.193 17.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.030 4.030 3 H 0.105 0.895 4 C -0.065 4.065 5 N -0.321 5.321 6 C -0.066 4.066 7 C -0.027 4.027 8 H 0.063 0.937 9 C -0.206 4.206 10 N -0.237 5.237 11 C -0.077 4.077 12 C -0.008 4.008 13 O -0.298 6.298 14 C 0.120 3.880 15 C -0.548 4.548 16 H 0.083 0.917 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.734 3.266 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.156 0.844 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.777 -10.156 6.900 17.721 hybrid contribution 0.903 0.153 0.062 0.918 sum -11.874 -10.003 6.962 17.015 Atomic orbital electron populations 1.22343 0.97447 1.02613 1.01238 1.21767 0.92894 0.98293 0.90002 0.89512 1.21980 0.98366 0.88811 0.97386 1.60522 1.63616 1.03120 1.04884 1.22020 0.98278 0.96677 0.89591 1.21629 0.97317 0.88946 0.94799 0.93653 1.21894 1.03120 0.99065 0.96528 1.62294 1.59022 1.00934 1.01439 1.22313 0.95908 0.96315 0.93175 1.22206 0.85801 0.94606 0.98200 1.87946 1.14935 1.34980 1.91945 1.20155 0.88916 0.84705 0.94255 1.21027 0.91149 0.94597 1.48020 0.91654 1.24945 0.99491 0.94710 0.95418 1.69960 1.33261 1.01441 1.49362 0.86417 0.83301 0.78060 0.78799 1.20060 1.21215 1.20084 0.92593 0.91369 0.93098 0.93877 0.90707 0.84358 0.93968 0.90866 0.92602 0.92363 0.90948 0.89787 0.93813 0.94529 0.94922 0.98089 0.98066 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 8.41 37.16 0.31 -1.82 16 2 C 0.08 1.11 2.85 -67.66 -0.19 0.92 16 3 H 0.09 1.33 6.62 -51.92 -0.34 0.98 16 4 C 0.06 0.81 6.15 -3.77 -0.02 0.78 16 5 N -0.69 -7.80 6.22 -113.64 -0.71 -8.51 16 6 C 0.06 0.77 6.00 -3.77 -0.02 0.74 16 7 C 0.08 1.08 2.18 -67.63 -0.15 0.93 16 8 H 0.05 0.59 6.35 -51.93 -0.33 0.26 16 9 C -0.15 -1.87 8.69 37.16 0.32 -1.55 16 10 N -0.51 -7.96 4.35 -218.54 -0.95 -8.91 16 11 C 0.05 0.79 5.09 -3.83 -0.02 0.77 16 12 C 0.07 1.35 6.11 37.16 0.23 1.58 16 13 O -0.38 -9.44 10.26 -35.23 -0.36 -9.80 16 14 C 0.19 5.49 5.69 36.01 0.20 5.69 16 15 C -0.51 -15.38 9.43 -34.44 -0.32 -15.71 16 16 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 19 Si 0.91 22.28 29.54 -169.99 -5.02 17.26 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.84 5.94 -51.93 -0.31 0.54 16 25 H 0.05 0.60 6.22 -51.93 -0.32 0.28 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.34 3.16 8.90 -39.29 -0.35 2.81 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.58 8.13 -51.93 -0.42 0.15 16 32 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 33 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 34 H 0.08 1.33 5.60 -51.93 -0.29 1.04 16 35 H 0.04 0.60 5.84 -51.93 -0.30 0.30 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.03 0.62 6.66 -51.93 -0.35 0.28 16 38 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 39 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 307.12 15.07 4.63 4.63 Total: -1.00 -31.84 307.12 -8.14 -39.98 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.70 Total: -1.78 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 0.24 Total: -6.13 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -0.92 Total: -44.15 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.36 Total: -9.80 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.84 -8.14 -39.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385190025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.709 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds