Wall clock time and date at job start Mon Mar 30 2020 04:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.48395 * 2 1 4 4 C 1.53046 * 109.49133 * 120.04139 * 2 1 3 5 5 N 1.46955 * 109.36691 * 61.56934 * 4 2 1 6 6 C 1.46957 * 110.87992 * 59.31585 * 5 4 2 7 7 C 1.53046 * 109.36724 * 300.68396 * 6 5 4 8 8 H 1.09004 * 109.48976 * 298.41112 * 7 6 5 9 9 C 1.52996 * 109.49085 * 178.36742 * 7 6 5 10 10 N 1.46955 * 109.48863 * 239.95852 * 2 1 3 11 11 C 1.46896 * 111.00160 * 63.21833 * 10 2 1 12 12 C 1.52998 * 109.47041 * 73.82579 * 11 10 2 13 13 O 1.42902 * 109.46985 * 64.03316 * 12 11 10 14 14 C 1.42903 * 113.99923 * 175.05170 * 13 12 11 15 15 C 1.50700 * 109.47153 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00078 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99889 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99951 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99754 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47583 * 59.99749 * 19 17 15 21 21 H 1.48507 * 109.47069 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47042 * 299.99643 * 19 17 15 23 23 H 1.09005 * 109.47314 * 299.99611 * 1 2 3 24 24 H 1.08999 * 109.46770 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47446 * 60.00509 * 1 2 3 26 26 H 1.09000 * 109.48930 * 181.53604 * 4 2 1 27 27 H 1.09001 * 109.48771 * 301.59953 * 4 2 1 28 28 H 1.00894 * 111.00312 * 183.19181 * 5 4 2 29 29 H 1.08997 * 109.48388 * 60.65339 * 6 5 4 30 30 H 1.08998 * 109.48567 * 180.69066 * 6 5 4 31 31 H 1.08996 * 109.47425 * 52.52683 * 9 7 6 32 32 H 1.09001 * 109.47442 * 172.53141 * 9 7 6 33 33 H 1.09010 * 109.46954 * 292.52964 * 9 7 6 34 34 H 1.09002 * 109.46748 * 193.82629 * 11 10 2 35 35 H 1.08998 * 109.47009 * 313.82778 * 11 10 2 36 36 H 1.09006 * 109.46899 * 184.02390 * 12 11 10 37 37 H 1.08996 * 109.47360 * 304.02521 * 12 11 10 38 38 H 1.08998 * 109.47178 * 299.99665 * 14 13 12 39 39 H 1.08998 * 109.46960 * 59.99447 * 14 13 12 40 40 H 0.96996 * 119.99463 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0277 0.0000 4 6 2.0407 -0.7223 1.2489 5 7 1.5811 -2.1179 1.2269 6 6 2.0713 -2.8120 0.0279 7 6 1.5606 -2.0897 -1.2210 8 1 0.4710 -2.1138 -1.2351 9 6 2.1027 -2.7859 -2.4709 10 7 2.0203 -0.6935 -1.1992 11 6 1.6134 0.0146 -2.4202 12 6 2.4517 1.2849 -2.5764 13 8 3.8237 0.9304 -2.7611 14 6 4.6804 2.0424 -3.0291 15 6 6.0956 1.5553 -3.2050 16 1 6.3185 0.5019 -3.1210 17 6 7.1056 2.4544 -3.4742 18 7 6.8339 3.7371 -3.5779 19 14 8.8597 1.8506 -3.6930 20 1 8.9167 0.8963 -4.8292 21 1 9.7500 3.0062 -3.9713 22 1 9.3072 1.1695 -2.4516 23 1 -0.3634 0.5138 0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 -0.8900 26 1 3.1303 -0.6985 1.2628 27 1 1.6544 -0.2262 2.1394 28 1 1.8605 -2.6040 2.0658 29 1 3.1613 -2.8119 0.0279 30 1 1.7077 -3.8395 0.0284 31 1 1.8764 -3.8509 -2.4206 32 1 1.6358 -2.3567 -3.3574 33 1 3.1825 -2.6462 -2.5252 34 1 1.7688 -0.6319 -3.2840 35 1 0.5589 0.2815 -2.3511 36 1 2.1020 1.8468 -3.4426 37 1 2.3522 1.8983 -1.6810 38 1 4.3521 2.5427 -3.9401 39 1 4.6385 2.7426 -2.1948 40 1 7.5444 4.3695 -3.7677 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385190025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:59 Heat of formation + Delta-G solvation = -62.430694 kcal Electronic energy + Delta-G solvation = -18487.755372 eV Core-core repulsion = 15722.515437 eV Total energy + Delta-G solvation = -2765.239935 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84948 -38.42448 -35.72121 -34.81964 -34.16687 -31.30713 -29.32256 -28.24981 -27.67070 -25.48019 -24.44634 -22.81441 -22.45579 -19.48593 -18.60428 -17.78742 -17.47438 -16.89917 -16.42527 -16.21635 -15.78871 -15.57665 -15.27372 -15.03355 -14.48272 -14.10664 -13.67823 -13.40712 -13.22964 -13.19743 -12.95358 -12.75960 -12.70203 -12.46184 -12.37586 -12.33168 -12.04211 -11.75032 -11.41512 -11.34307 -11.18144 -10.83765 -10.16797 -9.48511 -9.02214 -8.31856 -6.43978 1.38373 1.43540 1.51956 2.34584 2.89841 3.01485 3.25698 3.28008 3.84025 3.99064 4.05605 4.18313 4.29481 4.34335 4.39437 4.48473 4.53067 4.61600 4.63715 4.70405 4.74111 4.84535 4.84887 4.91414 4.98010 5.10889 5.11997 5.13579 5.20154 5.33091 5.47905 5.55052 5.92485 5.97645 6.16722 6.32605 6.50681 6.57901 6.87206 7.28307 8.80432 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028970 B = 0.005391 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.295862 B = 5192.510110 C = 5377.237174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.074 3.926 3 H 0.065 0.935 4 C 0.068 3.932 5 N -0.682 5.682 6 C 0.066 3.934 7 C 0.082 3.918 8 H 0.056 0.944 9 C -0.144 4.144 10 N -0.540 5.540 11 C 0.060 3.940 12 C 0.062 3.938 13 O -0.392 6.392 14 C 0.210 3.790 15 C -0.546 4.546 16 H 0.059 0.941 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.983 3.017 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.267 1.267 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.017 0.983 27 H 0.094 0.906 28 H 0.353 0.647 29 H 0.020 0.980 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.033 0.967 38 H -0.017 1.017 39 H -0.021 1.021 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.291 -11.669 7.625 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.035 4.035 3 H 0.083 0.917 4 C -0.062 4.062 5 N -0.314 5.314 6 C -0.064 4.064 7 C -0.026 4.026 8 H 0.074 0.926 9 C -0.202 4.202 10 N -0.265 5.265 11 C -0.067 4.067 12 C -0.016 4.016 13 O -0.312 6.312 14 C 0.135 3.865 15 C -0.583 4.583 16 H 0.077 0.923 17 C -0.192 4.192 18 N -0.571 5.571 19 Si 0.805 3.195 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.192 1.192 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.113 0.887 28 H 0.172 0.828 29 H 0.039 0.961 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.001 0.999 39 H -0.003 1.003 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.241 -11.543 7.348 19.041 hybrid contribution 0.961 0.604 -0.043 1.136 sum -12.280 -10.939 7.305 17.995 Atomic orbital electron populations 1.22213 0.95461 1.02801 1.01883 1.21792 0.94422 0.97237 0.90011 0.91664 1.21926 0.96820 0.89879 0.97581 1.60525 1.63026 1.02456 1.05380 1.22034 0.97025 0.97914 0.89418 1.21705 0.97816 0.87562 0.95528 0.92609 1.21864 1.01014 1.00825 0.96478 1.62239 1.60328 1.02312 1.01644 1.22193 0.96307 0.94561 0.93677 1.22541 0.83458 0.97133 0.98454 1.87908 1.17436 1.33922 1.91922 1.19770 0.89377 0.85017 0.92379 1.21336 0.92578 0.94644 1.49762 0.92293 1.25964 1.04412 0.94696 0.94140 1.70069 1.35164 1.02712 1.49126 0.85247 0.76956 0.78042 0.79235 1.18930 1.19794 1.19195 0.91343 0.91232 0.93056 0.96466 0.88746 0.82826 0.96122 0.88290 0.89934 0.92332 0.93895 0.89861 0.91099 0.93844 0.94918 0.99903 1.00332 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.61 8.41 71.98 0.61 -3.00 16 2 C 0.07 2.03 2.85 44.92 0.13 2.15 16 3 H 0.07 2.03 6.62 -2.38 -0.02 2.02 16 4 C 0.07 1.65 6.15 86.31 0.53 2.18 16 5 N -0.68 -14.09 6.22 -513.46 -3.19 -17.28 16 6 C 0.07 1.47 6.00 86.31 0.52 1.99 16 7 C 0.08 2.04 2.18 44.91 0.10 2.14 16 8 H 0.06 1.30 6.35 -2.39 -0.02 1.28 16 9 C -0.14 -3.48 8.69 71.98 0.63 -2.86 16 10 N -0.54 -16.59 4.35 -845.33 -3.68 -20.27 16 11 C 0.06 1.86 5.09 86.30 0.44 2.30 16 12 C 0.06 2.43 6.11 71.98 0.44 2.87 16 13 O -0.39 -20.24 10.26 -148.98 -1.53 -21.76 16 14 C 0.21 12.34 5.69 71.24 0.41 12.75 16 15 C -0.55 -33.74 9.43 25.60 0.24 -33.50 16 16 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 17 C 0.01 0.37 5.46 84.66 0.46 0.83 16 18 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 19 Si 0.98 45.51 29.54 68.60 2.03 47.54 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 24 H 0.07 1.52 5.94 -2.39 -0.01 1.51 16 25 H 0.05 1.11 6.22 -2.39 -0.01 1.09 16 26 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.35 5.79 8.90 -89.70 -0.80 4.99 16 29 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 1.52 8.13 -2.39 -0.02 1.50 16 32 H 0.06 1.39 6.43 -2.39 -0.02 1.37 16 33 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.08 2.59 5.60 -2.39 -0.01 2.58 16 35 H 0.07 1.82 5.84 -2.39 -0.01 1.81 16 36 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.03 1.28 6.66 -2.39 -0.02 1.27 16 38 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 39 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -69.12 307.12 -1.38 -70.51 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.22 Total: 10.50 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 4.49 Total: -12.15 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -6.59 Total: -94.63 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -1.53 Total: -21.76 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -69.12 -1.38 -70.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385190025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.075 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds