Wall clock time and date at job start Mon Mar 30 2020 05:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47106 * 2 1 4 4 N 1.46897 * 109.47295 * 120.00020 * 2 1 3 5 5 C 1.53000 * 109.46832 * 240.00139 * 2 1 3 6 6 H 1.08998 * 110.63233 * 56.89628 * 5 2 1 7 7 C 1.55134 * 110.85691 * 293.68223 * 5 2 1 8 8 C 1.54904 * 101.65604 * 205.89885 * 7 5 2 9 9 N 1.47836 * 104.79703 * 37.06832 * 8 7 5 10 10 C 1.46904 * 111.00184 * 213.63811 * 9 8 7 11 11 C 1.52996 * 109.47219 * 290.84440 * 10 9 8 12 12 O 1.42901 * 109.47091 * 64.99734 * 11 10 9 13 13 C 1.42905 * 113.99785 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.46972 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 C 1.47442 * 108.56996 * 335.90639 * 9 8 7 23 23 H 1.09004 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47202 * 299.99908 * 1 2 3 25 25 H 1.08999 * 109.47002 * 60.00059 * 1 2 3 26 26 H 1.00898 * 111.00178 * 296.04674 * 4 2 1 27 27 H 1.00902 * 110.99997 * 59.99712 * 4 2 1 28 28 H 1.09001 * 110.99373 * 323.98935 * 7 5 2 29 29 H 1.09007 * 110.99053 * 87.76526 * 7 5 2 30 30 H 1.09003 * 110.37204 * 278.23754 * 8 7 5 31 31 H 1.08998 * 110.37571 * 155.90459 * 8 7 5 32 32 H 1.09002 * 109.46932 * 170.84103 * 10 9 8 33 33 H 1.08994 * 109.46819 * 50.84728 * 10 9 8 34 34 H 1.09003 * 109.47090 * 304.99634 * 11 10 9 35 35 H 1.09002 * 109.47184 * 185.00003 * 11 10 9 36 36 H 1.09001 * 109.47112 * 60.00541 * 13 12 11 37 37 H 1.08993 * 109.47057 * 299.99974 * 13 12 11 38 38 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 39 39 H 1.08998 * 109.89035 * 120.38879 * 22 9 8 40 40 H 1.08994 * 109.89449 * 241.58308 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0400 -0.7212 -1.2493 6 1 1.6427 -0.2551 -2.1509 7 6 1.6750 -2.2284 -1.2046 8 6 2.7826 -2.8451 -2.0948 9 7 3.9960 -2.0585 -1.7871 10 6 4.8498 -1.9215 -2.9746 11 6 5.4586 -3.2808 -3.3246 12 8 4.4194 -4.1836 -3.7082 13 6 4.8835 -5.4892 -4.0577 14 6 3.7102 -6.3529 -4.4428 15 1 2.7101 -5.9454 -4.4230 16 6 3.9134 -7.6631 -4.8213 17 7 5.1311 -8.1591 -4.8458 18 14 2.4591 -8.7335 -5.2992 19 1 2.9412 -10.0904 -5.6623 20 1 1.7600 -8.1287 -6.4615 21 1 1.5196 -8.8327 -4.1534 22 6 3.5829 -0.7378 -1.2781 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.7503 -0.1990 2.0372 27 1 1.6962 -1.6479 1.2227 28 1 1.7324 -2.6140 -0.1867 29 1 0.6874 -2.4038 -1.6312 30 1 2.5223 -2.7446 -3.1485 31 1 2.9351 -3.8936 -1.8391 32 1 5.6478 -1.2083 -2.7680 33 1 4.2516 -1.5646 -3.8129 34 1 5.9831 -3.6785 -2.4558 35 1 6.1605 -3.1628 -4.1502 36 1 5.3963 -5.9330 -3.2044 37 1 5.5732 -5.4166 -4.8986 38 1 5.8864 -7.6032 -4.5980 39 1 3.9741 -0.5893 -0.2717 40 1 3.9498 0.0462 -1.9404 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385214785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:43 Heat of formation + Delta-G solvation = -78.439026 kcal Electronic energy + Delta-G solvation = -18084.714661 eV Core-core repulsion = 15318.780553 eV Total energy + Delta-G solvation = -2765.934108 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52575 -38.71531 -36.72980 -35.20143 -32.76767 -30.00408 -29.96793 -28.96157 -27.96509 -24.77419 -23.62753 -23.51026 -21.62705 -20.35053 -19.17178 -17.62882 -17.52352 -17.33372 -16.22592 -15.89796 -15.66370 -15.36367 -15.00952 -14.91222 -14.32360 -14.18306 -14.00593 -13.76337 -13.47324 -13.20811 -12.91265 -12.83099 -12.68846 -12.47745 -12.37311 -11.92001 -11.79527 -11.59496 -11.45379 -11.36941 -10.84828 -10.83706 -10.32765 -9.56560 -9.15638 -8.83605 -6.54277 1.51575 1.60793 1.81777 2.49204 3.03498 3.05441 3.08213 3.57195 3.65829 3.80181 4.01490 4.12050 4.26036 4.33207 4.36878 4.44077 4.45929 4.52959 4.55442 4.65227 4.69465 4.74600 4.83919 4.91127 4.93102 5.01073 5.07729 5.19489 5.26322 5.33450 5.46542 5.67562 5.91971 6.07781 6.22068 6.32620 6.35192 6.66159 6.67411 7.27003 8.57447 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029792 B = 0.004956 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.619703 B = 5648.001589 C = 6321.564879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.105 3.895 3 H 0.087 0.913 4 N -0.848 5.848 5 C -0.096 4.096 6 H 0.077 0.923 7 C -0.118 4.118 8 C 0.064 3.936 9 N -0.538 5.538 10 C 0.064 3.936 11 C 0.054 3.946 12 O -0.392 6.392 13 C 0.197 3.803 14 C -0.618 4.618 15 H 0.053 0.947 16 C -0.029 4.029 17 N -0.929 5.929 18 Si 1.127 2.873 19 H -0.276 1.276 20 H -0.267 1.267 21 H -0.267 1.267 22 C 0.053 3.947 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.348 0.652 27 H 0.340 0.660 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.028 0.972 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.035 0.965 34 H 0.040 0.960 35 H 0.048 0.952 36 H -0.023 1.023 37 H -0.021 1.021 38 H 0.255 0.745 39 H 0.091 0.909 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.064 18.071 9.617 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.007 4.007 3 H 0.106 0.894 4 N -0.381 5.381 5 C -0.116 4.116 6 H 0.095 0.905 7 C -0.156 4.156 8 C -0.064 4.064 9 N -0.263 5.263 10 C -0.064 4.064 11 C -0.023 4.023 12 O -0.311 6.311 13 C 0.122 3.878 14 C -0.656 4.656 15 H 0.072 0.928 16 C -0.226 4.226 17 N -0.566 5.566 18 Si 0.946 3.054 19 H -0.201 1.201 20 H -0.192 1.192 21 H -0.192 1.192 22 C -0.074 4.074 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.162 0.838 27 H 0.155 0.845 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.066 0.934 36 H -0.006 1.006 37 H -0.003 1.003 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.615 16.519 9.197 20.382 hybrid contribution -0.159 1.507 -0.078 1.517 sum -7.774 18.025 9.119 21.645 Atomic orbital electron populations 1.22591 0.96880 1.02074 1.02683 1.21193 0.92414 0.97659 0.89404 0.89449 1.58885 1.67772 1.06856 1.04555 1.22413 0.95561 0.95209 0.98429 0.90509 1.22751 0.97542 0.95221 1.00122 1.22741 0.89129 0.97373 0.97155 1.63526 1.17542 1.15402 1.29811 1.22313 0.97795 0.94632 0.91679 1.22622 0.90830 0.91017 0.97827 1.87886 1.33522 1.22424 1.87318 1.19915 0.95297 0.80936 0.91668 1.22214 0.94339 0.98868 1.50146 0.92845 1.27607 1.04114 0.97650 0.93274 1.70921 0.99483 1.39629 1.46555 0.82833 0.70829 0.74162 0.77554 1.20112 1.19173 1.19188 1.22890 0.94500 0.88740 1.01320 0.92982 0.91658 0.91958 0.83803 0.84476 0.90282 0.90819 0.95385 0.93469 0.87223 0.94666 0.94191 0.93364 1.00559 1.00347 0.93618 0.89055 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 9.33 71.98 0.67 -1.81 16 2 C 0.11 1.66 3.18 44.92 0.14 1.81 16 3 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 4 N -0.85 -13.74 8.27 -168.68 -1.40 -15.13 16 5 C -0.10 -2.03 2.81 -9.61 -0.03 -2.06 16 6 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 7 C -0.12 -3.02 5.59 31.98 0.18 -2.84 16 8 C 0.06 2.25 5.07 86.77 0.44 2.69 16 9 N -0.54 -17.24 5.16 -885.57 -4.57 -21.81 16 10 C 0.06 2.03 5.13 86.30 0.44 2.47 16 11 C 0.05 2.15 6.23 71.98 0.45 2.60 16 12 O -0.39 -19.74 7.67 -148.98 -1.14 -20.88 16 13 C 0.20 11.38 5.00 71.24 0.36 11.73 16 14 C -0.62 -37.86 9.43 25.60 0.24 -37.62 16 15 H 0.05 3.26 7.81 -2.91 -0.02 3.23 16 16 C -0.03 -1.74 5.46 84.65 0.46 -1.27 16 17 N -0.93 -58.62 13.65 21.45 0.29 -58.33 16 18 Si 1.13 51.04 29.90 68.60 2.05 53.09 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 C 0.05 1.28 6.35 86.65 0.55 1.83 16 23 H 0.05 0.78 7.49 -2.38 -0.02 0.76 16 24 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.35 4.22 9.07 -89.70 -0.81 3.41 16 27 H 0.34 5.87 6.73 -89.69 -0.60 5.27 16 28 H 0.08 1.95 5.87 -2.39 -0.01 1.93 16 29 H 0.07 1.77 8.13 -2.38 -0.02 1.75 16 30 H 0.03 1.09 7.21 -2.39 -0.02 1.08 16 31 H 0.05 2.03 7.60 -2.39 -0.02 2.01 16 32 H 0.11 2.76 8.03 -2.39 -0.02 2.74 16 33 H 0.04 1.13 7.85 -2.39 -0.02 1.11 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 36 H -0.02 -1.40 8.01 -2.39 -0.02 -1.42 16 37 H -0.02 -1.25 8.01 -2.39 -0.02 -1.27 16 38 H 0.25 16.29 7.22 -92.71 -0.67 15.62 16 39 H 0.09 2.28 7.18 -2.39 -0.02 2.26 16 40 H 0.05 1.20 7.55 -2.39 -0.02 1.19 16 Total: -1.00 -69.49 312.17 -1.16 -70.65 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -0.30 Total: 14.88 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 3.91 Total: -22.47 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -5.67 Total: -95.27 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -1.14 Total: -20.88 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.05 Total: 53.09 kcal Total: -69.49 -1.16 -70.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385214785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.790 kcal (2) G-P(sol) polarization free energy of solvation -69.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds