Wall clock time and date at job start Mon Mar 30 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.47138 * 2 1 4 4 N 1.46906 * 109.46993 * 119.99439 * 2 1 3 5 5 C 1.52992 * 109.47271 * 239.99789 * 2 1 3 6 6 H 1.09005 * 110.76609 * 303.19891 * 5 2 1 7 7 C 1.55398 * 110.84620 * 66.46325 * 5 2 1 8 8 C 1.54916 * 101.74107 * 153.86232 * 7 5 2 9 9 N 1.47843 * 104.79337 * 323.02060 * 8 7 5 10 10 C 1.46904 * 110.99640 * 146.36598 * 9 8 7 11 11 C 1.53000 * 109.47063 * 49.15380 * 10 9 8 12 12 O 1.42904 * 109.46889 * 65.00215 * 11 10 9 13 13 C 1.42909 * 113.99547 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46855 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99780 * 359.97438 * 14 13 12 16 16 C 1.37870 * 119.99953 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00148 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00261 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47227 * 59.99562 * 18 16 14 20 20 H 1.48497 * 109.47204 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46912 * 299.99703 * 18 16 14 22 22 C 1.47439 * 108.57210 * 24.09642 * 9 8 7 23 23 H 1.08993 * 109.46584 * 60.00253 * 1 2 3 24 24 H 1.08994 * 109.46585 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46985 * 299.99807 * 1 2 3 26 26 H 1.00895 * 111.00074 * 300.00629 * 4 2 1 27 27 H 1.00903 * 110.99451 * 63.96191 * 4 2 1 28 28 H 1.08995 * 110.87020 * 35.77889 * 7 5 2 29 29 H 1.08997 * 111.02640 * 272.01765 * 7 5 2 30 30 H 1.08996 * 110.37177 * 204.18825 * 8 7 5 31 31 H 1.09002 * 110.37261 * 81.84838 * 8 7 5 32 32 H 1.09004 * 109.46580 * 169.15491 * 10 9 8 33 33 H 1.08998 * 109.47171 * 289.15232 * 10 9 8 34 34 H 1.09003 * 109.46909 * 184.99397 * 11 10 9 35 35 H 1.08985 * 109.47420 * 304.99737 * 11 10 9 36 36 H 1.08997 * 109.46781 * 299.99756 * 13 12 11 37 37 H 1.09001 * 109.46806 * 59.99836 * 13 12 11 38 38 H 0.96999 * 120.00792 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.88998 * 118.41597 * 22 9 8 40 40 H 1.09003 * 109.88733 * 239.44258 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 2.0401 -0.7212 -1.2491 6 1 1.6428 -1.7351 -1.2993 7 6 1.6777 0.0744 -2.5338 8 6 2.7883 -0.3834 -3.5120 9 7 3.9996 -0.5124 -2.6741 10 6 4.8556 -1.6066 -3.1514 11 6 5.0624 -1.4710 -4.6613 12 8 5.7915 -0.2731 -4.9364 13 6 6.0402 -0.0503 -6.3260 14 6 6.8105 1.2334 -6.4989 15 1 7.0825 1.8206 -5.6341 16 6 7.1670 1.6587 -7.7609 17 7 6.8345 0.9444 -8.8139 18 14 8.1212 3.2502 -7.9754 19 1 9.4137 3.1540 -7.2508 20 1 8.3786 3.4823 -9.4193 21 1 7.3290 4.3801 -7.4266 22 6 3.5830 -0.7379 -1.2779 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3632 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6961 -0.2349 2.0386 27 1 1.7504 -1.6648 1.1910 28 1 1.7337 1.1480 -2.3544 29 1 0.6916 -0.2073 -2.9032 30 1 2.9421 0.3656 -4.2888 31 1 2.5301 -1.3446 -3.9563 32 1 5.8207 -1.5595 -2.6467 33 1 4.3785 -2.5623 -2.9344 34 1 5.6229 -2.3301 -5.0298 35 1 4.0935 -1.4289 -5.1584 36 1 6.6211 -0.8801 -6.7286 37 1 5.0915 0.0211 -6.8579 38 1 7.0850 1.2438 -9.7019 39 1 3.9499 -1.7046 -0.9330 40 1 3.9743 0.0558 -0.6414 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385214788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:47 Heat of formation + Delta-G solvation = -53.108759 kcal Electronic energy + Delta-G solvation = -17764.010133 eV Core-core repulsion = 14999.174428 eV Total energy + Delta-G solvation = -2764.835705 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.39572 -36.87691 -35.63460 -32.74718 -31.75281 -29.17983 -28.71790 -27.66490 -26.37746 -22.55916 -22.41493 -22.17217 -20.21162 -19.95736 -16.49312 -16.30058 -15.79455 -15.59528 -15.41910 -14.57572 -14.43455 -13.98243 -13.76226 -13.41610 -13.29815 -13.14482 -12.82074 -12.34232 -11.99289 -11.67071 -11.50441 -11.31255 -11.01369 -10.98294 -10.81568 -10.76770 -10.63964 -10.52321 -10.32440 -9.88326 -9.03021 -8.94020 -8.72298 -8.06824 -7.89938 -6.04068 -4.04953 3.37772 3.39573 3.44407 4.19709 4.24048 4.41865 4.49560 4.74690 4.83441 5.00768 5.08063 5.09430 5.22663 5.32279 5.45333 5.50067 5.58162 5.59429 5.70476 5.75830 5.77343 5.91223 5.94065 6.07941 6.13426 6.19882 6.29584 6.38538 6.47346 6.89826 7.17397 7.18051 7.32789 7.41848 7.50688 7.87935 8.24240 8.69445 9.09933 9.59758 11.07636 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.038804 B = 0.004106 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.408385 B = 6817.821304 C = 7014.950755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.097 3.903 3 H 0.085 0.915 4 N -0.843 5.843 5 C -0.102 4.102 6 H 0.068 0.932 7 C -0.123 4.123 8 C 0.044 3.956 9 N -0.517 5.517 10 C 0.057 3.943 11 C 0.061 3.939 12 O -0.379 6.379 13 C 0.194 3.806 14 C -0.510 4.510 15 H 0.067 0.933 16 C 0.055 3.945 17 N -0.902 5.902 18 Si 0.908 3.092 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.059 3.941 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.339 0.661 27 H 0.337 0.663 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.263 0.737 39 H 0.049 0.951 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.084 -5.288 16.339 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.014 4.014 3 H 0.103 0.897 4 N -0.371 5.371 5 C -0.122 4.122 6 H 0.087 0.913 7 C -0.162 4.162 8 C -0.083 4.083 9 N -0.241 5.241 10 C -0.071 4.071 11 C -0.017 4.017 12 O -0.299 6.299 13 C 0.120 3.880 14 C -0.549 4.549 15 H 0.085 0.915 16 C -0.146 4.146 17 N -0.541 5.541 18 Si 0.735 3.265 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.068 4.068 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.945 -4.524 15.977 20.455 hybrid contribution -1.160 -0.445 -0.295 1.277 sum -13.104 -4.968 15.682 21.032 Atomic orbital electron populations 1.22648 0.97908 1.01765 1.02316 1.21440 0.91718 0.98562 0.89727 0.89716 1.58886 1.67475 1.06613 1.04141 1.22458 0.96954 0.98782 0.94037 0.91340 1.22812 0.98239 1.00694 0.94407 1.23047 0.88508 1.00298 0.96495 1.63619 1.16306 1.42820 1.01349 1.22325 0.98051 0.90989 0.95727 1.22360 0.95650 0.89885 0.93818 1.87967 1.74314 1.39119 1.28488 1.20172 0.94994 0.96397 0.76477 1.21044 1.34694 1.06256 0.92878 0.91515 1.24943 0.96322 0.97853 0.95434 1.69957 1.46979 1.38794 0.98380 0.86399 0.80304 0.83015 0.76775 1.20022 1.21258 1.20007 1.22754 0.92684 1.01025 0.90368 0.91720 0.92938 0.92875 0.84828 0.85094 0.90477 0.91275 0.89515 0.94079 0.90096 0.94585 0.94404 0.94505 0.98038 0.97992 0.92713 0.93265 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.37 9.33 37.16 0.35 -1.02 16 2 C 0.10 0.86 2.75 -67.71 -0.19 0.67 16 3 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 4 N -0.84 -6.69 8.90 -4.66 -0.04 -6.73 16 5 C -0.10 -1.08 2.62 -88.66 -0.23 -1.31 16 6 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 7 C -0.12 -1.41 5.70 -24.45 -0.14 -1.55 16 8 C 0.04 0.66 5.22 -2.29 -0.01 0.64 16 9 N -0.52 -8.40 5.26 -231.24 -1.22 -9.62 16 10 C 0.06 0.93 5.21 -3.82 -0.02 0.91 16 11 C 0.06 1.19 5.74 37.16 0.21 1.40 16 12 O -0.38 -9.61 10.27 -35.23 -0.36 -9.97 16 13 C 0.19 5.51 5.69 36.01 0.20 5.72 16 14 C -0.51 -15.52 9.43 -34.44 -0.32 -15.84 16 15 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 18 Si 0.91 22.38 29.54 -169.99 -5.02 17.36 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.06 0.78 6.12 -2.84 -0.02 0.77 16 23 H 0.06 0.49 7.50 -51.93 -0.39 0.10 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.34 2.18 9.04 -39.29 -0.36 1.82 16 27 H 0.34 2.35 8.98 -39.29 -0.35 2.00 16 28 H 0.08 0.91 8.02 -51.93 -0.42 0.49 16 29 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.04 0.58 7.06 -51.93 -0.37 0.22 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.04 0.50 7.96 -51.93 -0.41 0.09 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.70 6.29 -51.94 -0.33 0.37 16 36 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 37 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.05 0.62 7.49 -51.93 -0.39 0.24 16 40 H 0.08 1.14 7.82 -51.93 -0.41 0.74 16 LS Contribution 319.51 15.07 4.81 4.81 Total: -1.00 -32.22 319.51 -8.54 -40.76 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -7.19 Total: -1.71 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -0.26 Total: -8.08 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -0.52 Total: -43.17 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.36 Total: -9.97 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.22 -8.54 -40.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385214788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.352 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds