Wall clock time and date at job start Mon Mar 30 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.47138 * 2 1 4 4 N 1.46906 * 109.46993 * 119.99439 * 2 1 3 5 5 C 1.52992 * 109.47271 * 239.99789 * 2 1 3 6 6 H 1.09005 * 110.76609 * 303.19891 * 5 2 1 7 7 C 1.55398 * 110.84620 * 66.46325 * 5 2 1 8 8 C 1.54916 * 101.74107 * 153.86232 * 7 5 2 9 9 N 1.47843 * 104.79337 * 323.02060 * 8 7 5 10 10 C 1.46904 * 110.99640 * 146.36598 * 9 8 7 11 11 C 1.53000 * 109.47063 * 49.15380 * 10 9 8 12 12 O 1.42904 * 109.46889 * 65.00215 * 11 10 9 13 13 C 1.42909 * 113.99547 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46855 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99780 * 359.97438 * 14 13 12 16 16 C 1.37870 * 119.99953 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00148 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00261 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47227 * 59.99562 * 18 16 14 20 20 H 1.48497 * 109.47204 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46912 * 299.99703 * 18 16 14 22 22 C 1.47439 * 108.57210 * 24.09642 * 9 8 7 23 23 H 1.08993 * 109.46584 * 60.00253 * 1 2 3 24 24 H 1.08994 * 109.46585 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46985 * 299.99807 * 1 2 3 26 26 H 1.00895 * 111.00074 * 300.00629 * 4 2 1 27 27 H 1.00903 * 110.99451 * 63.96191 * 4 2 1 28 28 H 1.08995 * 110.87020 * 35.77889 * 7 5 2 29 29 H 1.08997 * 111.02640 * 272.01765 * 7 5 2 30 30 H 1.08996 * 110.37177 * 204.18825 * 8 7 5 31 31 H 1.09002 * 110.37261 * 81.84838 * 8 7 5 32 32 H 1.09004 * 109.46580 * 169.15491 * 10 9 8 33 33 H 1.08998 * 109.47171 * 289.15232 * 10 9 8 34 34 H 1.09003 * 109.46909 * 184.99397 * 11 10 9 35 35 H 1.08985 * 109.47420 * 304.99737 * 11 10 9 36 36 H 1.08997 * 109.46781 * 299.99756 * 13 12 11 37 37 H 1.09001 * 109.46806 * 59.99836 * 13 12 11 38 38 H 0.96999 * 120.00792 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.88998 * 118.41597 * 22 9 8 40 40 H 1.09003 * 109.88733 * 239.44258 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 2.0401 -0.7212 -1.2491 6 1 1.6428 -1.7351 -1.2993 7 6 1.6777 0.0744 -2.5338 8 6 2.7883 -0.3834 -3.5120 9 7 3.9996 -0.5124 -2.6741 10 6 4.8556 -1.6066 -3.1514 11 6 5.0624 -1.4710 -4.6613 12 8 5.7915 -0.2731 -4.9364 13 6 6.0402 -0.0503 -6.3260 14 6 6.8105 1.2334 -6.4989 15 1 7.0825 1.8206 -5.6341 16 6 7.1670 1.6587 -7.7609 17 7 6.8345 0.9444 -8.8139 18 14 8.1212 3.2502 -7.9754 19 1 9.4137 3.1540 -7.2508 20 1 8.3786 3.4823 -9.4193 21 1 7.3290 4.3801 -7.4266 22 6 3.5830 -0.7379 -1.2779 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3632 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6961 -0.2349 2.0386 27 1 1.7504 -1.6648 1.1910 28 1 1.7337 1.1480 -2.3544 29 1 0.6916 -0.2073 -2.9032 30 1 2.9421 0.3656 -4.2888 31 1 2.5301 -1.3446 -3.9563 32 1 5.8207 -1.5595 -2.6467 33 1 4.3785 -2.5623 -2.9344 34 1 5.6229 -2.3301 -5.0298 35 1 4.0935 -1.4289 -5.1584 36 1 6.6211 -0.8801 -6.7286 37 1 5.0915 0.0211 -6.8579 38 1 7.0850 1.2438 -9.7019 39 1 3.9499 -1.7046 -0.9330 40 1 3.9743 0.0558 -0.6414 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385214788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:47 Heat of formation + Delta-G solvation = -77.961354 kcal Electronic energy + Delta-G solvation = -17765.087822 eV Core-core repulsion = 14999.174428 eV Total energy + Delta-G solvation = -2765.913395 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.48029 -38.52356 -36.76137 -34.92676 -32.98444 -30.36564 -29.64416 -29.22444 -27.98446 -24.51275 -23.81888 -23.23347 -21.31913 -20.96585 -18.62463 -17.55835 -17.29942 -16.86048 -16.66852 -16.34909 -15.64030 -15.28549 -15.05898 -14.93178 -14.36674 -14.01062 -13.94825 -13.72561 -13.34949 -13.13212 -13.03699 -12.74828 -12.64656 -12.25375 -12.23108 -12.13659 -11.96768 -11.73709 -11.63005 -11.40174 -11.27768 -10.84958 -10.19536 -9.54373 -9.10031 -8.31638 -6.43976 1.39742 1.45104 1.53451 2.35601 3.01777 3.03896 3.25655 3.45886 3.67070 3.85044 4.01950 4.18102 4.22605 4.31779 4.37942 4.42564 4.46166 4.51467 4.60861 4.71667 4.77265 4.82218 4.90658 4.96881 5.01115 5.02485 5.16811 5.17702 5.20684 5.23995 5.47829 5.55464 5.97147 6.13603 6.21981 6.32193 6.56382 6.67672 6.85191 7.28240 8.80648 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.038804 B = 0.004106 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.408385 B = 6817.821304 C = 7014.950755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.103 3.897 3 H 0.070 0.930 4 N -0.850 5.850 5 C -0.091 4.091 6 H 0.081 0.919 7 C -0.114 4.114 8 C 0.042 3.958 9 N -0.548 5.548 10 C 0.066 3.934 11 C 0.052 3.948 12 O -0.396 6.396 13 C 0.210 3.790 14 C -0.548 4.548 15 H 0.059 0.941 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.984 3.016 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.266 1.266 22 C 0.063 3.937 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.349 0.651 27 H 0.344 0.656 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.041 0.959 36 H -0.016 1.016 37 H -0.017 1.017 38 H 0.271 0.729 39 H 0.057 0.943 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.758 -5.180 17.423 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.009 4.009 3 H 0.088 0.912 4 N -0.380 5.380 5 C -0.110 4.110 6 H 0.100 0.900 7 C -0.153 4.153 8 C -0.086 4.086 9 N -0.273 5.273 10 C -0.062 4.062 11 C -0.025 4.025 12 O -0.316 6.316 13 C 0.135 3.865 14 C -0.586 4.586 15 H 0.077 0.923 16 C -0.191 4.191 17 N -0.571 5.571 18 Si 0.806 3.194 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.191 1.191 22 C -0.064 4.064 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.162 0.838 27 H 0.157 0.843 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.001 0.999 37 H 0.000 1.000 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.636 -4.436 17.086 21.709 hybrid contribution -0.970 -0.549 -0.612 1.272 sum -13.606 -4.985 16.474 21.940 Atomic orbital electron populations 1.22574 0.96408 1.02357 1.02672 1.21288 0.92764 0.97549 0.89313 0.91168 1.58835 1.67787 1.07181 1.04222 1.22389 0.94867 0.99497 0.94292 0.90021 1.22760 0.97993 1.00468 0.94061 1.22978 0.89395 0.99728 0.96470 1.63499 1.17293 1.43394 1.03075 1.22240 0.98366 0.92725 0.92877 1.22700 0.95243 0.87980 0.96552 1.87922 1.75289 1.42011 1.26383 1.19790 0.93440 0.95363 0.77941 1.21356 1.36392 1.07413 0.93434 0.92264 1.25962 0.96797 1.01759 0.94628 1.70061 1.47343 1.40608 0.99060 0.85231 0.78808 0.77879 0.77472 1.18994 1.19765 1.19082 1.22706 0.94677 1.00831 0.88223 0.91973 0.92176 0.91978 0.83758 0.84257 0.91131 0.89098 0.93100 0.93290 0.90741 0.91240 0.93505 0.94073 0.99861 0.99971 0.92013 0.92469 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 9.33 71.98 0.67 -1.52 16 2 C 0.10 1.62 2.75 44.91 0.12 1.74 16 3 H 0.07 1.32 8.11 -2.39 -0.02 1.31 16 4 N -0.85 -11.73 8.90 -168.66 -1.50 -13.23 16 5 C -0.09 -1.73 2.62 -9.52 -0.02 -1.76 16 6 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 7 C -0.11 -2.50 5.70 32.07 0.18 -2.31 16 8 C 0.04 1.25 5.22 86.78 0.45 1.70 16 9 N -0.55 -17.71 5.26 -885.51 -4.66 -22.37 16 10 C 0.07 2.11 5.21 86.30 0.45 2.56 16 11 C 0.05 2.08 5.74 71.98 0.41 2.49 16 12 O -0.40 -20.74 10.27 -148.98 -1.53 -22.27 16 13 C 0.21 12.39 5.69 71.24 0.41 12.79 16 14 C -0.55 -34.14 9.43 25.60 0.24 -33.90 16 15 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 16 C 0.01 0.41 5.46 84.65 0.46 0.87 16 17 N -0.93 -57.41 13.29 21.44 0.28 -57.12 16 18 Si 0.98 45.72 29.54 68.60 2.03 47.75 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 C 0.06 1.58 6.12 86.65 0.53 2.11 16 23 H 0.06 0.80 7.50 -2.39 -0.02 0.78 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.35 3.75 9.04 -89.70 -0.81 2.94 16 27 H 0.34 3.92 8.98 -89.69 -0.81 3.11 16 28 H 0.07 1.63 8.02 -2.39 -0.02 1.61 16 29 H 0.09 1.60 8.13 -2.39 -0.02 1.58 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.35 7.06 -2.39 -0.02 1.34 16 32 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.07 1.78 7.96 -2.39 -0.02 1.76 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.59 6.29 -2.39 -0.02 1.58 16 36 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 37 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 38 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 39 H 0.06 1.34 7.49 -2.39 -0.02 1.32 16 40 H 0.07 1.87 7.82 -2.39 -0.02 1.85 16 Total: -1.00 -70.01 319.51 -2.08 -72.09 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -0.61 Total: 10.38 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 3.91 Total: -15.22 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -5.88 Total: -92.72 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -1.53 Total: -22.27 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -70.01 -2.08 -72.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385214788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.872 kcal (2) G-P(sol) polarization free energy of solvation -70.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds