Wall clock time and date at job start Mon Mar 30 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46995 * 2 1 4 4 N 1.46899 * 109.47284 * 240.00085 * 2 1 3 5 5 C 1.53001 * 109.47010 * 120.00083 * 2 1 3 6 6 H 1.08993 * 110.63028 * 58.87154 * 5 2 1 7 7 C 1.55144 * 110.70596 * 181.97543 * 5 2 1 8 8 C 1.55114 * 101.55851 * 153.90477 * 7 5 2 9 9 N 1.47836 * 104.90574 * 323.15634 * 8 7 5 10 10 C 1.46902 * 110.99894 * 146.24003 * 9 8 7 11 11 C 1.53003 * 109.46978 * 69.15747 * 10 9 8 12 12 O 1.42898 * 109.47077 * 65.00020 * 11 10 9 13 13 C 1.42903 * 113.99866 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.46852 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00458 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99919 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00039 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99874 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47120 * 90.00233 * 18 16 14 20 20 H 1.48499 * 109.47475 * 210.00100 * 18 16 14 21 21 H 1.48503 * 109.47201 * 330.00370 * 18 16 14 22 22 C 1.47449 * 108.56938 * 23.97392 * 9 8 7 23 23 H 1.08995 * 109.46941 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47385 * 299.99859 * 1 2 3 25 25 H 1.09006 * 109.47339 * 60.00037 * 1 2 3 26 26 H 1.00900 * 111.00121 * 305.30073 * 4 2 1 27 27 H 1.00907 * 110.99719 * 69.25140 * 4 2 1 28 28 H 1.08997 * 110.98694 * 272.12981 * 7 5 2 29 29 H 1.08999 * 110.98838 * 35.94069 * 7 5 2 30 30 H 1.08999 * 110.42169 * 204.23955 * 8 7 5 31 31 H 1.08996 * 110.21313 * 81.97301 * 8 7 5 32 32 H 1.08998 * 109.47140 * 189.15790 * 10 9 8 33 33 H 1.09005 * 109.47206 * 309.15898 * 10 9 8 34 34 H 1.09000 * 109.47060 * 185.00248 * 11 10 9 35 35 H 1.09002 * 109.46871 * 304.99959 * 11 10 9 36 36 H 1.09001 * 109.47269 * 299.99704 * 13 12 11 37 37 H 1.09001 * 109.47001 * 60.00281 * 13 12 11 38 38 H 0.97002 * 119.99979 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.88617 * 239.59995 * 22 9 8 40 40 H 1.09006 * 109.88758 * 118.41390 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7213 1.2492 6 1 1.6708 -1.7464 1.2784 7 6 3.5903 -0.6948 1.3035 8 6 3.8499 -0.8114 2.8283 9 7 2.7697 -0.0237 3.4593 10 6 2.3660 -0.6165 4.7414 11 6 3.4936 -0.4432 5.7609 12 8 3.6827 0.9473 6.0302 13 6 4.7187 1.2205 6.9759 14 6 4.8297 2.7090 7.1833 15 1 4.1750 3.3794 6.6463 16 6 5.7678 3.2151 8.0578 17 7 5.8644 4.5141 8.2392 18 14 6.9007 2.0557 8.9860 19 1 8.1323 1.8237 8.1894 20 1 7.2634 2.6591 10.2935 21 1 6.2072 0.7623 9.2131 22 6 1.6303 0.0428 2.5258 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6271 -1.6194 -1.2675 27 1 1.8256 -0.1556 -2.0315 28 1 4.0142 -1.5432 0.7663 29 1 3.9786 0.2459 0.9133 30 1 4.8234 -0.3915 3.0815 31 1 3.7922 -1.8538 3.1415 32 1 1.4674 -0.1181 5.1052 33 1 2.1616 -1.6782 4.6025 34 1 3.2311 -0.9598 6.6842 35 1 4.4150 -0.8641 5.3585 36 1 4.4812 0.7387 7.9244 37 1 5.6657 0.8341 6.5991 38 1 6.5242 4.8701 8.8547 39 1 1.4112 1.0823 2.2817 40 1 0.7552 -0.4273 2.9747 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385214790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:55 Heat of formation + Delta-G solvation = -49.156445 kcal Electronic energy + Delta-G solvation = -17736.672953 eV Core-core repulsion = 14972.008633 eV Total energy + Delta-G solvation = -2764.664320 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -39.41357 -36.96657 -35.75833 -32.67982 -31.74422 -29.73550 -28.63539 -27.70292 -26.85297 -22.77040 -22.15507 -21.74885 -20.44689 -20.01815 -16.83031 -16.45826 -15.89822 -15.70839 -15.51120 -14.50112 -14.19751 -14.17741 -13.86744 -13.57911 -13.26918 -13.08849 -12.77007 -12.51117 -12.24872 -11.92353 -11.84410 -11.41658 -11.06966 -11.04220 -10.84393 -10.74466 -10.63209 -10.57931 -10.28060 -9.79553 -9.08773 -8.95733 -8.74784 -8.36380 -8.01365 -6.04539 -4.02490 3.29350 3.35806 3.37752 4.11872 4.18937 4.41556 4.48488 4.66373 4.79807 4.90125 5.07884 5.09516 5.17218 5.26814 5.39439 5.43832 5.58309 5.59091 5.62508 5.69686 5.73346 5.85536 5.91766 5.97594 6.00851 6.11268 6.20982 6.28401 6.36336 6.68939 6.88444 7.08587 7.15784 7.22029 7.30603 7.68378 8.14434 8.77414 9.09163 9.55517 11.08745 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.041159 B = 0.004141 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.125726 B = 6759.724733 C = 6857.935082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.097 3.903 3 H 0.085 0.915 4 N -0.843 5.843 5 C -0.100 4.100 6 H 0.068 0.932 7 C -0.106 4.106 8 C 0.038 3.962 9 N -0.513 5.513 10 C 0.057 3.943 11 C 0.064 3.936 12 O -0.364 6.364 13 C 0.168 3.832 14 C -0.514 4.514 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.876 3.124 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.267 1.267 22 C 0.049 3.951 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.336 0.664 27 H 0.340 0.660 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.036 0.964 36 H -0.001 1.001 37 H -0.004 1.004 38 H 0.265 0.735 39 H 0.078 0.922 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 -14.186 -15.852 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.015 4.015 3 H 0.103 0.897 4 N -0.371 5.371 5 C -0.120 4.120 6 H 0.087 0.913 7 C -0.144 4.144 8 C -0.090 4.090 9 N -0.237 5.237 10 C -0.071 4.071 11 C -0.014 4.014 12 O -0.283 6.283 13 C 0.092 3.908 14 C -0.552 4.552 15 H 0.101 0.899 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.079 4.079 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.149 0.851 27 H 0.152 0.848 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.017 0.983 37 H 0.014 0.986 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.263 -13.308 -15.374 21.948 hybrid contribution -0.540 -1.603 0.317 1.721 sum -8.803 -14.911 -15.057 22.946 Atomic orbital electron populations 1.22661 0.97811 1.01813 1.02477 1.21428 0.91814 0.98353 0.89928 0.89712 1.58838 1.66717 1.06701 1.04827 1.22377 0.96861 0.98842 0.93946 0.91342 1.22599 0.94211 1.02714 0.94873 1.23184 0.96691 0.95378 0.93720 1.63511 1.07373 1.50265 1.02548 1.22330 0.98723 0.96191 0.89887 1.22291 0.96744 0.86483 0.95887 1.88009 1.56855 1.19915 1.63523 1.20577 0.85607 0.97774 0.86827 1.20912 1.19474 0.89567 1.25219 0.89910 1.24768 0.96868 0.95064 0.96340 1.69880 1.35592 1.11271 1.36880 0.86857 0.81589 0.81538 0.79777 1.19974 1.20867 1.19183 1.22873 0.93043 1.00702 0.91288 0.92875 0.91562 0.92862 0.85139 0.84797 0.90966 0.90568 0.90026 0.94267 0.90160 0.94335 0.94336 0.94547 0.98306 0.98622 0.92470 0.90393 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 9.26 37.16 0.34 -1.07 16 2 C 0.10 0.84 2.75 -67.71 -0.19 0.66 16 3 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 4 N -0.84 -6.42 8.94 -4.67 -0.04 -6.46 16 5 C -0.10 -1.03 2.68 -88.79 -0.24 -1.27 16 6 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 7 C -0.11 -1.23 6.26 -24.48 -0.15 -1.38 16 8 C 0.04 0.52 5.72 -2.19 -0.01 0.51 16 9 N -0.51 -7.98 5.11 -231.11 -1.18 -9.16 16 10 C 0.06 0.87 4.95 -3.82 -0.02 0.85 16 11 C 0.06 1.18 6.07 37.16 0.23 1.41 16 12 O -0.36 -8.93 10.27 -35.23 -0.36 -9.29 16 13 C 0.17 4.44 4.76 36.00 0.17 4.61 16 14 C -0.51 -15.80 9.99 -34.44 -0.34 -16.15 16 15 H 0.08 2.79 8.06 -52.49 -0.42 2.37 16 16 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 17 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 18 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 22 C 0.05 0.61 5.54 -2.83 -0.02 0.60 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.07 0.53 7.34 -51.93 -0.38 0.15 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.34 2.19 8.97 -39.29 -0.35 1.84 16 27 H 0.34 2.13 9.08 -39.29 -0.36 1.77 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 30 H 0.08 1.25 8.12 -51.93 -0.42 0.83 16 31 H 0.04 0.49 7.62 -51.93 -0.40 0.10 16 32 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 33 H 0.04 0.49 7.85 -51.93 -0.41 0.09 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.04 0.65 7.34 -51.93 -0.38 0.27 16 36 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 37 H 0.00 -0.10 7.57 -51.93 -0.39 -0.49 16 38 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 39 H 0.08 1.01 7.69 -51.93 -0.40 0.61 16 40 H 0.05 0.57 7.55 -51.93 -0.39 0.17 16 LS Contribution 317.54 15.07 4.79 4.79 Total: -1.00 -32.99 317.54 -8.23 -41.22 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -7.21 Total: -1.63 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -0.32 Total: -9.19 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: -0.45 Total: -43.17 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.36 Total: -9.29 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.99 -8.23 -41.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385214790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.934 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds