Wall clock time and date at job start Mon Mar 30 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46995 * 2 1 4 4 N 1.46899 * 109.47284 * 240.00085 * 2 1 3 5 5 C 1.53001 * 109.47010 * 120.00083 * 2 1 3 6 6 H 1.08993 * 110.63028 * 58.87154 * 5 2 1 7 7 C 1.55144 * 110.70596 * 181.97543 * 5 2 1 8 8 C 1.55114 * 101.55851 * 153.90477 * 7 5 2 9 9 N 1.47836 * 104.90574 * 323.15634 * 8 7 5 10 10 C 1.46902 * 110.99894 * 146.24003 * 9 8 7 11 11 C 1.53003 * 109.46978 * 69.15747 * 10 9 8 12 12 O 1.42898 * 109.47077 * 65.00020 * 11 10 9 13 13 C 1.42903 * 113.99866 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.46852 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00458 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99919 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00039 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99874 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47120 * 90.00233 * 18 16 14 20 20 H 1.48499 * 109.47475 * 210.00100 * 18 16 14 21 21 H 1.48503 * 109.47201 * 330.00370 * 18 16 14 22 22 C 1.47449 * 108.56938 * 23.97392 * 9 8 7 23 23 H 1.08995 * 109.46941 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47385 * 299.99859 * 1 2 3 25 25 H 1.09006 * 109.47339 * 60.00037 * 1 2 3 26 26 H 1.00900 * 111.00121 * 305.30073 * 4 2 1 27 27 H 1.00907 * 110.99719 * 69.25140 * 4 2 1 28 28 H 1.08997 * 110.98694 * 272.12981 * 7 5 2 29 29 H 1.08999 * 110.98838 * 35.94069 * 7 5 2 30 30 H 1.08999 * 110.42169 * 204.23955 * 8 7 5 31 31 H 1.08996 * 110.21313 * 81.97301 * 8 7 5 32 32 H 1.08998 * 109.47140 * 189.15790 * 10 9 8 33 33 H 1.09005 * 109.47206 * 309.15898 * 10 9 8 34 34 H 1.09000 * 109.47060 * 185.00248 * 11 10 9 35 35 H 1.09002 * 109.46871 * 304.99959 * 11 10 9 36 36 H 1.09001 * 109.47269 * 299.99704 * 13 12 11 37 37 H 1.09001 * 109.47001 * 60.00281 * 13 12 11 38 38 H 0.97002 * 119.99979 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.88617 * 239.59995 * 22 9 8 40 40 H 1.09006 * 109.88758 * 118.41390 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7213 1.2492 6 1 1.6708 -1.7464 1.2784 7 6 3.5903 -0.6948 1.3035 8 6 3.8499 -0.8114 2.8283 9 7 2.7697 -0.0237 3.4593 10 6 2.3660 -0.6165 4.7414 11 6 3.4936 -0.4432 5.7609 12 8 3.6827 0.9473 6.0302 13 6 4.7187 1.2205 6.9759 14 6 4.8297 2.7090 7.1833 15 1 4.1750 3.3794 6.6463 16 6 5.7678 3.2151 8.0578 17 7 5.8644 4.5141 8.2392 18 14 6.9007 2.0557 8.9860 19 1 8.1323 1.8237 8.1894 20 1 7.2634 2.6591 10.2935 21 1 6.2072 0.7623 9.2131 22 6 1.6303 0.0428 2.5258 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6271 -1.6194 -1.2675 27 1 1.8256 -0.1556 -2.0315 28 1 4.0142 -1.5432 0.7663 29 1 3.9786 0.2459 0.9133 30 1 4.8234 -0.3915 3.0815 31 1 3.7922 -1.8538 3.1415 32 1 1.4674 -0.1181 5.1052 33 1 2.1616 -1.6782 4.6025 34 1 3.2311 -0.9598 6.6842 35 1 4.4150 -0.8641 5.3585 36 1 4.4812 0.7387 7.9244 37 1 5.6657 0.8341 6.5991 38 1 6.5242 4.8701 8.8547 39 1 1.4112 1.0823 2.2817 40 1 0.7552 -0.4273 2.9747 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385214790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:52 Heat of formation + Delta-G solvation = -75.485302 kcal Electronic energy + Delta-G solvation = -17737.814658 eV Core-core repulsion = 14972.008633 eV Total energy + Delta-G solvation = -2765.806025 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 4.23 seconds Orbital eigenvalues (eV) -40.42163 -38.56706 -36.76928 -34.87591 -32.96648 -30.56210 -30.36387 -28.84179 -28.15488 -24.03808 -23.78858 -23.10786 -21.54091 -20.89908 -19.04189 -17.53917 -17.25800 -16.93997 -16.74127 -16.31240 -15.74735 -15.07291 -14.91840 -14.67437 -14.58880 -14.47275 -13.86908 -13.71708 -13.42272 -13.34476 -13.18919 -12.85296 -12.62089 -12.25409 -12.09905 -11.98603 -11.83170 -11.72227 -11.59217 -11.43081 -11.28884 -10.91475 -10.29509 -9.55700 -9.11309 -8.36502 -6.44160 1.32688 1.36398 1.47300 2.29985 2.95757 3.02191 3.16493 3.46024 3.67794 3.87466 4.06751 4.20610 4.27114 4.34346 4.37903 4.39902 4.46020 4.52613 4.56162 4.63522 4.68319 4.77387 4.89959 4.92618 5.02090 5.02646 5.04151 5.15978 5.20589 5.24073 5.45282 5.47847 5.95191 6.15196 6.21467 6.30540 6.60102 6.66955 6.82039 7.20598 8.81019 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.041159 B = 0.004141 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.125726 B = 6759.724733 C = 6857.935082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.101 3.899 3 H 0.067 0.933 4 N -0.847 5.847 5 C -0.088 4.088 6 H 0.083 0.917 7 C -0.099 4.099 8 C 0.038 3.962 9 N -0.550 5.550 10 C 0.063 3.937 11 C 0.054 3.946 12 O -0.394 6.394 13 C 0.180 3.820 14 C -0.544 4.544 15 H 0.027 0.973 16 C 0.012 3.988 17 N -0.943 5.943 18 Si 0.958 3.042 19 H -0.260 1.260 20 H -0.271 1.271 21 H -0.246 1.246 22 C 0.050 3.950 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.345 0.655 27 H 0.348 0.652 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.011 0.989 37 H 0.006 0.994 38 H 0.273 0.727 39 H 0.063 0.937 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.021 -17.165 -15.986 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.011 4.011 3 H 0.085 0.915 4 N -0.377 5.377 5 C -0.108 4.108 6 H 0.102 0.898 7 C -0.137 4.137 8 C -0.090 4.090 9 N -0.275 5.275 10 C -0.065 4.065 11 C -0.023 4.023 12 O -0.314 6.314 13 C 0.104 3.896 14 C -0.582 4.582 15 H 0.045 0.955 16 C -0.186 4.186 17 N -0.583 5.583 18 Si 0.779 3.221 19 H -0.185 1.185 20 H -0.196 1.196 21 H -0.169 1.169 22 C -0.078 4.078 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.159 0.841 27 H 0.162 0.838 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.029 0.971 37 H 0.023 0.977 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.146 -16.298 -15.538 23.946 hybrid contribution -0.649 -0.596 0.285 0.926 sum -8.795 -16.894 -15.252 24.401 Atomic orbital electron populations 1.22593 0.96620 1.02455 1.02502 1.21272 0.92652 0.97291 0.89876 0.91517 1.58781 1.66883 1.07279 1.04730 1.22296 0.95620 0.99376 0.93515 0.89846 1.22523 0.95395 1.02321 0.93483 1.23149 0.95083 0.95765 0.94967 1.63389 1.09007 1.51580 1.03492 1.22284 0.97038 0.98153 0.89064 1.22670 0.98439 0.83389 0.97773 1.87963 1.56208 1.24110 1.63097 1.20281 0.86718 0.94734 0.87900 1.21171 1.19559 0.91656 1.25819 0.95462 1.25866 0.98506 0.97191 0.97019 1.70039 1.36667 1.13853 1.37727 0.85579 0.78964 0.79366 0.78228 1.18457 1.19624 1.16899 1.22851 0.92590 1.00458 0.91874 0.91854 0.92356 0.92079 0.84131 0.83848 0.89561 0.92370 0.92563 0.92541 0.90767 0.90811 0.92497 0.93824 0.97137 0.97668 0.91794 0.91852 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 9.26 71.98 0.67 -1.75 16 2 C 0.10 1.64 2.75 44.92 0.12 1.76 16 3 H 0.07 1.33 8.11 -2.38 -0.02 1.31 16 4 N -0.85 -11.31 8.94 -168.67 -1.51 -12.82 16 5 C -0.09 -1.66 2.68 -9.61 -0.03 -1.69 16 6 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 7 C -0.10 -2.20 6.26 32.05 0.20 -2.00 16 8 C 0.04 1.00 5.72 86.85 0.50 1.50 16 9 N -0.55 -16.82 5.11 -885.10 -4.52 -21.35 16 10 C 0.06 1.82 4.95 86.30 0.43 2.25 16 11 C 0.05 1.94 6.07 71.98 0.44 2.37 16 12 O -0.39 -19.53 10.27 -148.98 -1.53 -21.06 16 13 C 0.18 9.47 4.76 71.23 0.34 9.81 16 14 C -0.54 -34.62 9.99 25.60 0.26 -34.37 16 15 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 16 C 0.01 0.72 5.47 84.66 0.46 1.19 16 17 N -0.94 -60.97 13.96 21.45 0.30 -60.68 16 18 Si 0.96 44.61 27.47 68.60 1.88 46.49 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.25 -10.53 6.54 99.48 0.65 -9.88 16 22 C 0.05 1.20 5.54 86.65 0.48 1.68 16 23 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.06 0.87 7.34 -2.39 -0.02 0.85 16 25 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.35 3.62 8.97 -89.69 -0.80 2.81 16 27 H 0.35 3.77 9.08 -89.69 -0.81 2.95 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 1.49 8.05 -2.39 -0.02 1.47 16 30 H 0.06 1.75 8.12 -2.39 -0.02 1.73 16 31 H 0.06 1.29 7.62 -2.39 -0.02 1.27 16 32 H 0.07 2.22 8.03 -2.39 -0.02 2.20 16 33 H 0.07 1.64 7.85 -2.38 -0.02 1.62 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.04 1.48 7.34 -2.39 -0.02 1.46 16 36 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 37 H 0.01 0.28 7.57 -2.39 -0.02 0.27 16 38 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 39 H 0.06 1.67 7.69 -2.39 -0.02 1.66 16 40 H 0.06 1.33 7.55 -2.38 -0.02 1.31 16 Total: -1.00 -73.56 317.54 -2.18 -75.74 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -0.67 Total: 12.90 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 3.86 Total: -19.24 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -5.73 Total: -94.84 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -1.53 Total: -21.06 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -73.56 -2.18 -75.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385214790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.256 kcal (2) G-P(sol) polarization free energy of solvation -73.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.23 seconds