Wall clock time and date at job start Mon Mar 30 2020 05:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47269 * 2 1 4 4 N 1.46903 * 109.47472 * 239.99609 * 2 1 3 5 5 C 1.53005 * 109.46829 * 120.00203 * 2 1 3 6 6 H 1.08992 * 110.64822 * 61.69734 * 5 2 1 7 7 C 1.54602 * 110.72328 * 298.54356 * 5 2 1 8 8 C 1.53985 * 105.14320 * 219.68737 * 7 5 2 9 9 N 1.47902 * 107.05893 * 358.77460 * 8 7 5 10 10 C 1.46899 * 111.00265 * 145.84235 * 9 8 7 11 11 C 1.52999 * 109.47267 * 183.58502 * 10 9 8 12 12 O 1.42900 * 109.46981 * 67.02315 * 11 10 9 13 13 C 1.42907 * 114.00079 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47130 * 180.02562 * 13 12 11 15 15 H 1.08009 * 120.00206 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99974 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99879 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99910 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47131 * 90.00227 * 18 16 14 20 20 H 1.48508 * 109.46886 * 210.00266 * 18 16 14 21 21 H 1.48503 * 109.47039 * 329.99801 * 18 16 14 22 22 C 1.48538 * 105.82116 * 25.33062 * 9 8 7 23 23 H 1.08998 * 109.47307 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47503 * 300.00119 * 1 2 3 25 25 H 1.09007 * 109.46792 * 60.00104 * 1 2 3 26 26 H 1.00899 * 111.00142 * 176.04624 * 4 2 1 27 27 H 1.00901 * 111.00200 * 300.00730 * 4 2 1 28 28 H 1.09008 * 110.30503 * 338.60662 * 7 5 2 29 29 H 1.08998 * 110.30696 * 100.66766 * 7 5 2 30 30 H 1.08993 * 109.91921 * 118.12564 * 8 7 5 31 31 H 1.09004 * 109.92155 * 239.42659 * 8 7 5 32 32 H 1.08994 * 109.47434 * 303.58982 * 10 9 8 33 33 H 1.09005 * 109.46838 * 63.59042 * 10 9 8 34 34 H 1.09000 * 109.47271 * 187.02171 * 11 10 9 35 35 H 1.09003 * 109.47193 * 307.02311 * 11 10 9 36 36 H 1.08998 * 109.47145 * 299.99953 * 13 12 11 37 37 H 1.09001 * 109.46693 * 60.00166 * 13 12 11 38 38 H 0.97001 * 119.99607 * 179.97438 * 17 16 14 39 39 H 1.09001 * 110.67143 * 202.36064 * 22 9 8 40 40 H 1.09001 * 110.66804 * 79.22403 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0399 -0.7213 1.2493 6 1 1.7121 -1.7608 1.2536 7 6 1.5708 0.0057 2.5305 8 6 2.7738 -0.0535 3.4899 9 7 3.8458 -0.7997 2.7961 10 6 5.1701 -0.2763 3.1570 11 6 6.2452 -1.0115 2.3541 12 8 6.1170 -0.6790 0.9703 13 6 7.0797 -1.3160 0.1278 14 6 6.8528 -0.8955 -1.3014 15 1 6.0537 -0.2100 -1.5423 16 6 7.6654 -1.3860 -2.3015 17 7 8.6381 -2.2211 -2.0082 18 14 7.3846 -0.8642 -4.0731 19 1 8.1831 0.3538 -4.3629 20 1 7.8040 -1.9595 -4.9841 21 1 5.9434 -0.5724 -4.2807 22 6 3.5836 -0.6289 1.3440 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 3.0262 -0.6501 -1.2558 27 1 1.6961 -1.6480 -1.2227 28 1 1.3164 1.0416 2.3061 29 1 0.7131 -0.5083 2.9646 30 1 3.1140 0.9557 3.7215 31 1 2.4930 -0.5730 4.4061 32 1 5.2134 0.7892 2.9317 33 1 5.3435 -0.4299 4.2221 34 1 7.2316 -0.7134 2.7096 35 1 6.1225 -2.0870 2.4823 36 1 8.0831 -1.0238 0.4372 37 1 6.9747 -2.3978 0.2097 38 1 9.2095 -2.5664 -2.7119 39 1 4.0528 -1.4290 0.7716 40 1 3.9323 0.3457 1.0022 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385214802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:59 Heat of formation + Delta-G solvation = -79.639076 kcal Electronic energy + Delta-G solvation = -18435.606249 eV Core-core repulsion = 15669.620103 eV Total energy + Delta-G solvation = -2765.986146 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.49388 -38.52849 -36.67179 -34.92235 -32.98371 -30.29434 -29.59333 -29.25538 -28.10562 -24.60125 -23.75821 -22.70777 -21.70243 -20.83043 -18.59778 -17.57670 -17.50961 -16.96426 -16.59507 -16.19949 -15.80944 -15.24157 -15.05109 -14.69860 -14.47241 -14.11216 -14.01531 -13.42298 -13.34590 -13.02592 -12.89388 -12.71831 -12.51666 -12.34154 -12.33801 -12.12869 -12.03689 -11.73059 -11.57085 -11.42785 -11.21170 -10.84838 -10.19568 -9.57327 -9.36189 -8.31414 -6.42942 1.40553 1.42200 1.54888 2.34376 3.02866 3.03432 3.18484 3.56450 3.72100 3.87266 3.94404 4.20062 4.27246 4.31198 4.45445 4.51001 4.54115 4.56217 4.70643 4.76279 4.78390 4.85447 4.92533 4.97777 4.99844 5.11303 5.16661 5.18059 5.29018 5.36866 5.40485 5.56062 5.95976 5.96712 6.11499 6.27611 6.52944 6.55915 6.82096 7.28942 8.80985 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.007108 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.558824 B = 3938.048412 C = 5143.941480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.097 3.903 3 H 0.065 0.935 4 N -0.853 5.853 5 C -0.121 4.121 6 H 0.074 0.926 7 C -0.114 4.114 8 C 0.032 3.968 9 N -0.529 5.529 10 C 0.060 3.940 11 C 0.054 3.946 12 O -0.397 6.397 13 C 0.211 3.789 14 C -0.537 4.537 15 H 0.065 0.935 16 C 0.008 3.992 17 N -0.932 5.932 18 Si 0.977 3.023 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.261 1.261 22 C 0.064 3.936 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.339 0.661 27 H 0.341 0.659 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.036 0.964 33 H 0.111 0.889 34 H 0.048 0.952 35 H 0.040 0.960 36 H -0.020 1.020 37 H -0.019 1.019 38 H 0.269 0.731 39 H 0.056 0.944 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.729 4.257 9.373 17.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.015 4.015 3 H 0.083 0.917 4 N -0.381 5.381 5 C -0.142 4.142 6 H 0.093 0.907 7 C -0.152 4.152 8 C -0.096 4.096 9 N -0.254 5.254 10 C -0.069 4.069 11 C -0.024 4.024 12 O -0.316 6.316 13 C 0.136 3.864 14 C -0.574 4.574 15 H 0.083 0.917 16 C -0.191 4.191 17 N -0.572 5.572 18 Si 0.800 3.200 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.064 4.064 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.152 0.848 27 H 0.154 0.846 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.054 0.946 33 H 0.129 0.871 34 H 0.067 0.933 35 H 0.058 0.942 36 H -0.002 1.002 37 H -0.001 1.001 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -15.144 4.285 8.975 18.118 hybrid contribution 1.487 -0.082 -0.260 1.512 sum -13.657 4.203 8.715 16.737 Atomic orbital electron populations 1.21754 0.92784 1.02330 1.02371 1.21480 0.96482 0.97032 0.86482 0.91667 1.59027 1.16766 1.21566 1.40735 1.22980 0.94114 1.00379 0.96735 0.90724 1.22403 0.97782 1.01131 0.93912 1.22971 0.91473 0.96742 0.98388 1.64804 1.02039 1.52647 1.05875 1.22297 0.88409 0.96425 0.99722 1.22536 0.98047 0.98716 0.83053 1.87890 1.56051 1.70874 1.16831 1.19762 0.86316 0.90737 0.89567 1.21313 1.16334 1.28295 0.91502 0.91723 1.25901 0.94250 0.94589 1.04319 1.70077 1.19457 1.32436 1.35194 0.85262 0.79211 0.78026 0.77461 1.19626 1.20243 1.18498 1.23008 0.94897 0.99493 0.88975 0.92415 0.90588 0.92474 0.84846 0.84599 0.90500 0.89306 0.93519 0.89179 0.94558 0.87145 0.93335 0.94213 1.00193 1.00128 0.92200 0.92534 0.95370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.28 71.98 0.67 -1.92 16 2 C 0.10 2.42 2.81 44.91 0.13 2.55 16 3 H 0.07 1.77 8.12 -2.39 -0.02 1.75 16 4 N -0.85 -24.67 9.21 -168.68 -1.55 -26.23 16 5 C -0.12 -3.06 2.78 -9.58 -0.03 -3.08 16 6 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 7 C -0.11 -2.26 5.52 31.47 0.17 -2.08 16 8 C 0.03 0.71 6.70 86.44 0.58 1.29 16 9 N -0.53 -15.83 5.35 -883.02 -4.72 -20.55 16 10 C 0.06 1.80 5.38 86.30 0.46 2.26 16 11 C 0.05 2.04 6.07 71.98 0.44 2.48 16 12 O -0.40 -18.88 7.11 -148.98 -1.06 -19.94 16 13 C 0.21 11.82 5.69 71.23 0.41 12.23 16 14 C -0.54 -31.42 9.43 25.60 0.24 -31.18 16 15 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 16 C 0.01 0.45 5.46 84.65 0.46 0.91 16 17 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 18 Si 0.98 44.54 29.54 68.60 2.03 46.57 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 22 C 0.06 2.14 3.50 86.65 0.30 2.45 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.08 1.17 7.16 -2.39 -0.02 1.16 16 25 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.34 11.60 8.37 -89.69 -0.75 10.85 16 27 H 0.34 8.99 9.00 -89.69 -0.81 8.18 16 28 H 0.08 1.38 7.60 -2.38 -0.02 1.37 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 0.99 7.68 -2.39 -0.02 0.98 16 31 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.04 1.12 7.98 -2.39 -0.02 1.10 16 33 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 36 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 37 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 38 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.06 2.32 7.01 -2.39 -0.02 2.30 16 40 H 0.03 1.06 7.53 -2.39 -0.02 1.05 16 Total: -1.00 -64.51 316.43 -1.74 -66.25 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: -0.55 Total: 24.02 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 3.83 Total: -14.11 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -5.99 Total: -102.78 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -1.06 Total: -19.94 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -64.51 -1.74 -66.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385214802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.391 kcal (2) G-P(sol) polarization free energy of solvation -64.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds