Wall clock time and date at job start Mon Mar 30 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.53250 * 2 1 4 4 C 1.53120 * 109.50196 * 239.90602 * 2 1 3 5 5 C 1.53127 * 109.15988 * 182.40271 * 4 2 1 6 6 H 1.09001 * 109.50226 * 177.59997 * 5 4 2 7 7 N 1.46906 * 109.50003 * 297.67576 * 5 4 2 8 8 C 1.53033 * 109.27679 * 57.65290 * 5 4 2 9 9 N 1.46849 * 109.52504 * 300.82160 * 8 5 4 10 10 C 1.46903 * 110.99909 * 185.84223 * 9 8 5 11 11 C 1.52999 * 109.47217 * 52.03334 * 10 9 8 12 12 O 1.42897 * 109.47162 * 62.32393 * 11 10 9 13 13 C 1.42899 * 114.00516 * 179.97438 * 12 11 10 14 14 C 1.50693 * 109.47317 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00397 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99796 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00021 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99826 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47003 * 179.97438 * 18 16 14 20 20 H 1.48506 * 109.47214 * 60.00296 * 18 16 14 21 21 H 1.48494 * 109.47532 * 299.99840 * 18 16 14 22 22 C 1.46840 * 111.19909 * 61.74165 * 9 8 5 23 23 H 1.08996 * 109.47302 * 299.89380 * 1 2 3 24 24 H 1.08998 * 109.47338 * 59.89724 * 1 2 3 25 25 H 1.09004 * 109.46801 * 179.89971 * 1 2 3 26 26 H 1.08997 * 109.52583 * 302.30298 * 4 2 1 27 27 H 1.08999 * 109.52127 * 62.50105 * 4 2 1 28 28 H 1.00895 * 110.99375 * 180.02562 * 7 5 4 29 29 H 1.00897 * 110.99722 * 303.95323 * 7 5 4 30 30 H 1.09003 * 109.46179 * 180.80397 * 8 5 4 31 31 H 1.08996 * 109.46177 * 60.83583 * 8 5 4 32 32 H 1.09002 * 109.46956 * 292.03466 * 10 9 8 33 33 H 1.09002 * 109.47104 * 172.03829 * 10 9 8 34 34 H 1.08992 * 109.47072 * 302.32000 * 11 10 9 35 35 H 1.08999 * 109.46811 * 182.32128 * 11 10 9 36 36 H 1.09005 * 109.46584 * 59.99519 * 13 12 11 37 37 H 1.09000 * 109.46966 * 300.00170 * 13 12 11 38 38 H 0.97000 * 120.00294 * 0.02562 * 17 16 14 39 39 H 1.09004 * 109.46443 * 58.27298 * 22 9 8 40 40 H 1.08998 * 109.46825 * 178.24079 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7237 -1.2488 5 6 3.5712 -0.7718 -1.2108 6 1 3.9395 -1.3232 -2.0760 7 7 4.1057 0.5963 -1.2374 8 6 4.0230 -1.4729 0.0722 9 7 3.5093 -0.7421 1.2378 10 6 4.0374 -1.3059 2.4873 11 6 5.5624 -1.3954 2.4020 12 8 6.1091 -0.0833 2.2561 13 6 7.5351 -0.0543 2.1672 14 6 8.0001 1.3711 2.0158 15 1 7.2789 2.1746 1.9905 16 6 9.3463 1.6494 1.9097 17 7 10.2245 0.6711 1.9412 18 14 9.9228 3.4164 1.7228 19 1 11.4046 3.4464 1.6304 20 1 9.4847 4.2073 2.9009 21 1 9.3375 4.0002 0.4893 22 6 2.0410 -0.7234 1.2480 23 1 -0.3634 0.5122 0.8909 24 1 -0.3634 0.5154 -0.8890 25 1 -0.3633 -1.0277 -0.0018 26 1 1.6453 -1.7391 -1.2691 27 1 1.7156 -0.1869 -2.1398 28 1 5.1143 0.5909 -1.2135 29 1 3.7660 1.1016 -2.0419 30 1 5.1121 -1.4961 0.1092 31 1 3.6375 -2.4924 0.0841 32 1 3.6229 -2.3024 2.6400 33 1 3.7572 -0.6640 3.3225 34 1 5.8430 -2.0038 1.5423 35 1 5.9509 -1.8518 3.3124 36 1 7.8571 -0.6350 1.3027 37 1 7.9643 -0.4827 3.0730 38 1 9.9252 -0.2464 2.0386 39 1 1.6648 -1.7465 1.2543 40 1 1.6905 -0.2024 2.1389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385227014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:22 Heat of formation + Delta-G solvation = -53.933333 kcal Electronic energy + Delta-G solvation = -18396.826513 eV Core-core repulsion = 15631.955052 eV Total energy + Delta-G solvation = -2764.871461 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.37300 -36.81522 -34.49937 -33.63377 -32.79334 -29.17181 -28.40390 -26.56504 -26.22630 -23.79683 -22.41183 -21.87834 -20.35931 -19.05506 -16.89508 -16.22424 -15.73674 -15.41633 -15.13183 -14.61458 -14.30587 -14.15080 -13.69876 -13.52412 -13.18656 -12.81570 -12.45359 -12.25350 -12.00576 -11.87523 -11.62520 -11.55471 -11.18293 -10.98341 -10.65107 -10.52394 -10.37865 -10.29432 -10.05106 -9.84815 -8.73450 -8.55135 -8.21609 -8.14814 -7.83717 -6.39314 -4.06550 3.47938 3.50812 3.69470 4.07649 4.50589 4.68829 4.78606 4.81790 4.95432 5.04366 5.21505 5.38297 5.44046 5.48744 5.49822 5.57028 5.60919 5.71593 5.75100 5.75926 5.83269 5.89148 5.97171 6.03161 6.11622 6.15481 6.28540 6.33447 6.60110 6.83007 7.20176 7.33811 7.43943 7.59003 7.82130 8.01099 8.28053 8.75345 8.90663 9.63843 11.00821 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029900 B = 0.005465 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.220609 B = 5121.834538 C = 5488.591625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 H 0.094 0.906 4 C -0.107 4.107 5 C 0.097 3.903 6 H 0.029 0.971 7 N -0.823 5.823 8 C 0.060 3.940 9 N -0.502 5.502 10 C 0.061 3.939 11 C 0.060 3.940 12 O -0.363 6.363 13 C 0.186 3.814 14 C -0.588 4.588 15 H 0.062 0.938 16 C 0.015 3.985 17 N -0.915 5.915 18 Si 1.078 2.922 19 H -0.283 1.283 20 H -0.286 1.286 21 H -0.286 1.286 22 C 0.066 3.934 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.349 0.651 29 H 0.329 0.671 30 H 0.082 0.918 31 H 0.025 0.975 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.035 0.965 35 H 0.037 0.963 36 H -0.010 1.010 37 H -0.010 1.010 38 H 0.265 0.735 39 H 0.020 0.980 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.986 -5.167 -5.372 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 H 0.112 0.888 4 C -0.146 4.146 5 C -0.015 4.015 6 H 0.047 0.953 7 N -0.353 5.353 8 C -0.068 4.068 9 N -0.226 5.226 10 C -0.066 4.066 11 C -0.018 4.018 12 O -0.282 6.282 13 C 0.111 3.889 14 C -0.626 4.626 15 H 0.080 0.920 16 C -0.187 4.187 17 N -0.552 5.552 18 Si 0.906 3.094 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.212 1.212 22 C -0.062 4.062 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.163 0.837 29 H 0.141 0.859 30 H 0.100 0.900 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.008 0.992 37 H 0.008 0.992 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.959 -3.482 -4.871 17.045 hybrid contribution -1.004 -2.582 -0.628 2.841 sum -16.963 -6.064 -5.500 18.835 Atomic orbital electron populations 1.21825 0.95859 1.01155 1.01583 1.21037 0.93639 1.01781 0.93568 0.88796 1.21674 0.94756 0.99869 0.98254 1.21298 0.94565 0.90379 0.95303 0.95295 1.58456 1.14815 1.14059 1.48018 1.22163 1.01023 0.93204 0.90448 1.61635 1.06418 1.53689 1.00890 1.22129 0.94301 0.97070 0.93125 1.22371 0.92695 0.88290 0.98470 1.88046 1.22847 1.23350 1.93956 1.20244 0.76703 0.98418 0.93572 1.21898 0.94561 0.91962 1.54167 0.92004 1.25904 0.92506 1.06399 0.93916 1.70801 1.36688 1.00746 1.46929 0.83412 0.75893 0.73375 0.76745 1.20815 1.21264 1.21229 1.22080 0.87943 0.97712 0.98511 0.92699 0.92787 0.93342 0.92487 0.92267 0.83659 0.85921 0.89972 0.95744 0.94949 0.90115 0.94708 0.94525 0.99229 0.99239 0.92461 0.96227 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.20 37.16 0.34 -1.06 16 2 C -0.08 -0.98 2.72 -90.54 -0.25 -1.23 16 3 H 0.09 1.35 7.73 -51.93 -0.40 0.95 16 4 C -0.11 -1.22 4.92 -26.60 -0.13 -1.35 16 5 C 0.10 1.28 3.60 -67.63 -0.24 1.04 16 6 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 7 N -0.82 -11.96 8.47 -4.59 -0.04 -12.00 16 8 C 0.06 0.91 4.67 -3.83 -0.02 0.89 16 9 N -0.50 -8.09 4.52 -234.68 -1.06 -9.15 16 10 C 0.06 0.99 5.52 -3.82 -0.02 0.97 16 11 C 0.06 1.15 5.56 37.16 0.21 1.36 16 12 O -0.36 -9.06 10.23 -35.23 -0.36 -9.42 16 13 C 0.19 5.16 5.00 36.00 0.18 5.34 16 14 C -0.59 -17.80 9.43 -34.44 -0.32 -18.12 16 15 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 16 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 17 N -0.91 -28.44 13.65 55.43 0.76 -27.68 16 18 Si 1.08 25.96 29.90 -169.99 -5.08 20.88 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.07 0.87 4.74 -3.84 -0.02 0.86 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.35 5.65 9.04 -39.29 -0.36 5.29 16 29 H 0.33 4.00 8.99 -39.29 -0.35 3.65 16 30 H 0.08 1.42 5.79 -51.93 -0.30 1.12 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.03 0.65 6.05 -51.93 -0.31 0.33 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H -0.01 -0.28 8.01 -51.93 -0.42 -0.70 16 37 H -0.01 -0.29 8.01 -51.93 -0.42 -0.70 16 38 H 0.27 8.21 7.22 -40.82 -0.29 7.92 16 39 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 LS Contribution 315.26 15.07 4.75 4.75 Total: -1.00 -32.50 315.26 -8.54 -41.04 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.13 Total: 2.54 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -0.37 Total: -10.95 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.34 Total: -48.83 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.36 Total: -9.42 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.08 Total: 20.88 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.50 -8.54 -41.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385227014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.896 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds