Wall clock time and date at job start Mon Mar 30 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.53250 * 2 1 4 4 C 1.53120 * 109.50196 * 239.90602 * 2 1 3 5 5 C 1.53127 * 109.15988 * 182.40271 * 4 2 1 6 6 H 1.09001 * 109.50226 * 177.59997 * 5 4 2 7 7 N 1.46906 * 109.50003 * 297.67576 * 5 4 2 8 8 C 1.53033 * 109.27679 * 57.65290 * 5 4 2 9 9 N 1.46849 * 109.52504 * 300.82160 * 8 5 4 10 10 C 1.46903 * 110.99909 * 185.84223 * 9 8 5 11 11 C 1.52999 * 109.47217 * 52.03334 * 10 9 8 12 12 O 1.42897 * 109.47162 * 62.32393 * 11 10 9 13 13 C 1.42899 * 114.00516 * 179.97438 * 12 11 10 14 14 C 1.50693 * 109.47317 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00397 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99796 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00021 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99826 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47003 * 179.97438 * 18 16 14 20 20 H 1.48506 * 109.47214 * 60.00296 * 18 16 14 21 21 H 1.48494 * 109.47532 * 299.99840 * 18 16 14 22 22 C 1.46840 * 111.19909 * 61.74165 * 9 8 5 23 23 H 1.08996 * 109.47302 * 299.89380 * 1 2 3 24 24 H 1.08998 * 109.47338 * 59.89724 * 1 2 3 25 25 H 1.09004 * 109.46801 * 179.89971 * 1 2 3 26 26 H 1.08997 * 109.52583 * 302.30298 * 4 2 1 27 27 H 1.08999 * 109.52127 * 62.50105 * 4 2 1 28 28 H 1.00895 * 110.99375 * 180.02562 * 7 5 4 29 29 H 1.00897 * 110.99722 * 303.95323 * 7 5 4 30 30 H 1.09003 * 109.46179 * 180.80397 * 8 5 4 31 31 H 1.08996 * 109.46177 * 60.83583 * 8 5 4 32 32 H 1.09002 * 109.46956 * 292.03466 * 10 9 8 33 33 H 1.09002 * 109.47104 * 172.03829 * 10 9 8 34 34 H 1.08992 * 109.47072 * 302.32000 * 11 10 9 35 35 H 1.08999 * 109.46811 * 182.32128 * 11 10 9 36 36 H 1.09005 * 109.46584 * 59.99519 * 13 12 11 37 37 H 1.09000 * 109.46966 * 300.00170 * 13 12 11 38 38 H 0.97000 * 120.00294 * 0.02562 * 17 16 14 39 39 H 1.09004 * 109.46443 * 58.27298 * 22 9 8 40 40 H 1.08998 * 109.46825 * 178.24079 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7237 -1.2488 5 6 3.5712 -0.7718 -1.2108 6 1 3.9395 -1.3232 -2.0760 7 7 4.1057 0.5963 -1.2374 8 6 4.0230 -1.4729 0.0722 9 7 3.5093 -0.7421 1.2378 10 6 4.0374 -1.3059 2.4873 11 6 5.5624 -1.3954 2.4020 12 8 6.1091 -0.0833 2.2561 13 6 7.5351 -0.0543 2.1672 14 6 8.0001 1.3711 2.0158 15 1 7.2789 2.1746 1.9905 16 6 9.3463 1.6494 1.9097 17 7 10.2245 0.6711 1.9412 18 14 9.9228 3.4164 1.7228 19 1 11.4046 3.4464 1.6304 20 1 9.4847 4.2073 2.9009 21 1 9.3375 4.0002 0.4893 22 6 2.0410 -0.7234 1.2480 23 1 -0.3634 0.5122 0.8909 24 1 -0.3634 0.5154 -0.8890 25 1 -0.3633 -1.0277 -0.0018 26 1 1.6453 -1.7391 -1.2691 27 1 1.7156 -0.1869 -2.1398 28 1 5.1143 0.5909 -1.2135 29 1 3.7660 1.1016 -2.0419 30 1 5.1121 -1.4961 0.1092 31 1 3.6375 -2.4924 0.0841 32 1 3.6229 -2.3024 2.6400 33 1 3.7572 -0.6640 3.3225 34 1 5.8430 -2.0038 1.5423 35 1 5.9509 -1.8518 3.3124 36 1 7.8571 -0.6350 1.3027 37 1 7.9643 -0.4827 3.0730 38 1 9.9252 -0.2464 2.0386 39 1 1.6648 -1.7465 1.2543 40 1 1.6905 -0.2024 2.1389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385227014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:22 Heat of formation + Delta-G solvation = -78.386421 kcal Electronic energy + Delta-G solvation = -18397.886879 eV Core-core repulsion = 15631.955052 eV Total energy + Delta-G solvation = -2765.931827 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.50916 -38.60512 -35.89677 -34.99977 -34.58475 -30.64008 -29.55853 -28.34813 -27.46679 -25.08174 -24.65741 -22.99428 -21.57906 -20.09443 -19.14450 -17.61930 -17.38606 -16.60053 -16.43833 -15.84344 -15.67414 -15.63605 -15.47022 -14.82281 -14.64533 -14.14397 -14.03665 -13.52863 -13.42553 -13.12077 -12.84916 -12.80672 -12.68370 -12.45642 -12.38212 -11.95485 -11.87588 -11.47101 -11.32505 -11.10763 -10.81035 -10.79755 -10.27325 -9.32524 -9.00295 -8.80150 -6.49878 1.53895 1.62932 1.84158 2.51508 2.89949 3.06441 3.14605 3.65906 3.79386 3.85767 4.06397 4.09866 4.16901 4.28196 4.35167 4.48138 4.51539 4.53101 4.56606 4.65941 4.76169 4.81345 4.86002 4.90484 4.93159 4.94207 4.98821 5.07060 5.32001 5.39213 5.63346 5.73639 5.95889 6.17277 6.29971 6.37958 6.46335 6.72127 6.75360 7.30613 8.60741 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029900 B = 0.005465 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.220609 B = 5121.834538 C = 5488.591625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 H 0.066 0.934 4 C -0.101 4.101 5 C 0.094 3.906 6 H 0.040 0.960 7 N -0.835 5.835 8 C 0.061 3.939 9 N -0.529 5.529 10 C 0.068 3.932 11 C 0.052 3.948 12 O -0.380 6.380 13 C 0.199 3.801 14 C -0.614 4.614 15 H 0.051 0.949 16 C -0.028 4.028 17 N -0.930 5.930 18 Si 1.127 2.873 19 H -0.276 1.276 20 H -0.269 1.269 21 H -0.267 1.267 22 C 0.065 3.935 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.335 0.665 29 H 0.341 0.659 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.044 0.956 36 H -0.023 1.023 37 H -0.024 1.024 38 H 0.254 0.746 39 H 0.036 0.964 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.609 -5.023 -5.947 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 H 0.085 0.915 4 C -0.139 4.139 5 C -0.018 4.018 6 H 0.057 0.943 7 N -0.366 5.366 8 C -0.067 4.067 9 N -0.253 5.253 10 C -0.059 4.059 11 C -0.025 4.025 12 O -0.299 6.299 13 C 0.123 3.877 14 C -0.651 4.651 15 H 0.069 0.931 16 C -0.225 4.225 17 N -0.567 5.567 18 Si 0.946 3.054 19 H -0.201 1.201 20 H -0.194 1.194 21 H -0.192 1.192 22 C -0.062 4.062 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.148 0.852 29 H 0.154 0.846 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.062 0.938 36 H -0.005 1.005 37 H -0.007 1.007 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.631 -3.367 -5.450 18.759 hybrid contribution -0.554 -2.712 -0.434 2.802 sum -18.185 -6.079 -5.884 20.056 Atomic orbital electron populations 1.21757 0.93667 1.02111 1.02162 1.20981 0.95356 1.00032 0.93369 0.91549 1.21649 0.92928 1.00870 0.98433 1.21386 0.96075 0.89595 0.94704 0.94254 1.58474 1.13832 1.15327 1.48964 1.22123 0.99152 0.94346 0.91077 1.61602 1.08323 1.54505 1.00899 1.22057 0.91735 0.98781 0.93366 1.22693 0.94877 0.85922 0.99008 1.87996 1.20879 1.26976 1.94048 1.19892 0.78522 0.97104 0.92161 1.22203 0.95086 0.92784 1.55045 0.93101 1.27547 0.92619 1.10055 0.92296 1.70928 1.37047 1.00659 1.48089 0.82830 0.75887 0.68526 0.78138 1.20133 1.19411 1.19230 1.22147 0.86122 0.98765 0.99166 0.92561 0.91871 0.92127 0.90938 0.90943 0.85230 0.84608 0.93121 0.94064 0.91756 0.90623 0.94183 0.93773 1.00532 1.00681 0.93696 0.94600 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.20 71.98 0.66 -1.61 16 2 C -0.08 -1.74 2.72 -10.74 -0.03 -1.77 16 3 H 0.07 1.85 7.73 -2.39 -0.02 1.83 16 4 C -0.10 -2.04 4.92 30.68 0.15 -1.89 16 5 C 0.09 2.39 3.60 44.97 0.16 2.55 16 6 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 7 N -0.84 -24.27 8.47 -168.44 -1.43 -25.70 16 8 C 0.06 1.80 4.67 86.32 0.40 2.21 16 9 N -0.53 -16.55 4.52 -896.38 -4.05 -20.61 16 10 C 0.07 2.14 5.52 86.30 0.48 2.61 16 11 C 0.05 2.02 5.56 71.98 0.40 2.42 16 12 O -0.38 -19.44 10.23 -148.98 -1.52 -20.96 16 13 C 0.20 11.43 5.00 71.23 0.36 11.79 16 14 C -0.61 -37.90 9.43 25.60 0.24 -37.66 16 15 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 16 C -0.03 -1.68 5.46 84.66 0.46 -1.21 16 17 N -0.93 -58.47 13.65 21.45 0.29 -58.18 16 18 Si 1.13 51.60 29.90 68.60 2.05 53.65 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 22 C 0.07 1.61 4.74 86.33 0.41 2.02 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.34 11.20 9.04 -89.70 -0.81 10.39 16 29 H 0.34 8.14 8.99 -89.70 -0.81 7.33 16 30 H 0.05 1.79 5.79 -2.39 -0.01 1.78 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.04 1.51 6.05 -2.39 -0.01 1.50 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H -0.02 -1.35 8.01 -2.38 -0.02 -1.37 16 37 H -0.02 -1.44 8.01 -2.39 -0.02 -1.46 16 38 H 0.25 16.14 7.22 -92.71 -0.67 15.47 16 39 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.07 1.69 8.12 -2.39 -0.02 1.67 16 Total: -1.00 -70.19 315.26 -1.47 -71.66 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.51 Total: 20.67 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 3.70 Total: -20.54 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -5.19 Total: -104.48 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -1.52 Total: -20.96 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 2.05 Total: 53.65 kcal Total: -70.19 -1.47 -71.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385227014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.725 kcal (2) G-P(sol) polarization free energy of solvation -70.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds