Wall clock time and date at job start Mon Mar 30 2020 04:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 109.49627 * 2 1 4 4 C 1.53117 * 109.50297 * 239.92513 * 2 1 3 5 5 C 1.53114 * 109.21172 * 182.36953 * 4 2 1 6 6 H 1.09007 * 109.50692 * 297.74546 * 5 4 2 7 7 N 1.46897 * 109.50540 * 177.62607 * 5 4 2 8 8 C 1.53168 * 109.20718 * 57.62297 * 5 4 2 9 9 N 1.46839 * 109.55913 * 300.85912 * 8 5 4 10 10 C 1.46903 * 111.00022 * 185.83625 * 9 8 5 11 11 C 1.53000 * 109.47052 * 52.15093 * 10 9 8 12 12 O 1.42891 * 109.47502 * 62.28665 * 11 10 9 13 13 C 1.42897 * 114.00331 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47581 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99565 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99973 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00361 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99694 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47231 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46954 * 120.00481 * 18 16 14 21 21 H 1.48497 * 109.47112 * 240.00005 * 18 16 14 22 22 C 1.46849 * 111.19765 * 61.74489 * 9 8 5 23 23 H 1.09000 * 109.46360 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.46947 * 300.07573 * 1 2 3 25 25 H 1.09004 * 109.47122 * 60.07754 * 1 2 3 26 26 H 1.08993 * 109.52576 * 302.30729 * 4 2 1 27 27 H 1.09001 * 109.52209 * 62.43502 * 4 2 1 28 28 H 1.00905 * 111.00435 * 180.02562 * 7 5 4 29 29 H 1.00901 * 111.00295 * 303.95501 * 7 5 4 30 30 H 1.09003 * 109.44540 * 180.83288 * 8 5 4 31 31 H 1.09002 * 109.43617 * 60.88638 * 8 5 4 32 32 H 1.09010 * 109.46848 * 172.14509 * 10 9 8 33 33 H 1.08999 * 109.47296 * 292.14029 * 10 9 8 34 34 H 1.08998 * 109.47161 * 182.29815 * 11 10 9 35 35 H 1.09002 * 109.46356 * 302.28772 * 11 10 9 36 36 H 1.09001 * 109.47527 * 300.00877 * 13 12 11 37 37 H 1.09000 * 109.46816 * 60.00309 * 13 12 11 38 38 H 0.97003 * 120.00344 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.46317 * 178.24305 * 22 9 8 40 40 H 1.09002 * 109.46549 * 58.27075 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2490 5 6 3.5712 -0.7713 -1.2127 6 1 3.9678 0.2439 -1.2313 7 7 4.0665 -1.5136 -2.3795 8 6 4.0230 -1.4728 0.0718 9 7 3.5094 -0.7424 1.2375 10 6 4.0374 -1.3067 2.4869 11 6 5.5626 -1.3936 2.4027 12 8 6.1073 -0.0805 2.2577 13 6 7.5332 -0.0492 2.1700 14 6 7.9961 1.3772 2.0209 15 1 7.2736 2.1796 1.9960 16 6 9.3421 1.6579 1.9172 17 7 10.2218 0.6809 1.9480 18 14 9.9159 3.4260 1.7330 19 1 8.7382 4.3305 1.7267 20 1 10.8045 3.7789 2.8693 21 1 10.6613 3.5741 0.4573 22 6 2.0410 -0.7239 1.2478 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5150 0.8892 25 1 -0.3633 0.5126 -0.8907 26 1 1.6454 -1.7386 -1.2697 27 1 1.7148 -0.1868 -2.1399 28 1 5.0745 -1.5595 -2.3778 29 1 3.6629 -2.4376 -2.4183 30 1 5.1122 -1.4960 0.1088 31 1 3.6375 -2.4923 0.0831 32 1 3.7555 -0.6660 3.3226 33 1 3.6243 -2.3040 2.6383 34 1 5.9513 -1.8499 3.3131 35 1 5.8449 -2.0011 1.5428 36 1 7.9625 -0.4773 3.0758 37 1 7.8568 -0.6288 1.3055 38 1 11.1687 0.8783 1.8747 39 1 1.6906 -0.2030 2.1388 40 1 1.6649 -1.7469 1.2537 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385227015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:26 Heat of formation + Delta-G solvation = -56.999117 kcal Electronic energy + Delta-G solvation = -18171.192878 eV Core-core repulsion = 15406.188474 eV Total energy + Delta-G solvation = -2765.004404 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.44320 -36.76653 -34.60741 -34.01986 -32.61430 -29.28337 -28.28183 -26.81759 -26.53033 -23.86201 -22.27359 -21.57793 -20.44235 -19.75927 -16.38122 -16.29189 -15.83990 -15.59515 -15.23666 -14.54090 -14.44405 -14.24173 -14.05860 -13.53345 -13.22376 -12.86722 -12.66742 -12.25229 -12.14231 -11.90507 -11.65273 -11.22730 -11.14211 -10.79625 -10.76366 -10.69473 -10.60310 -10.45689 -10.18793 -9.88913 -9.05266 -8.78500 -8.71208 -8.13856 -8.03954 -6.08296 -4.09154 3.31540 3.37995 3.45268 3.95784 4.38009 4.49118 4.77925 4.84817 4.94351 5.07601 5.10404 5.28505 5.31753 5.41079 5.49504 5.54827 5.55792 5.62164 5.69441 5.73113 5.79582 5.94110 6.02207 6.06564 6.09565 6.16780 6.28517 6.31137 6.44924 7.06233 7.11243 7.28605 7.35527 7.44398 7.46650 7.84111 8.19132 8.63126 9.05836 9.55890 11.03449 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026514 B = 0.005162 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.785757 B = 5422.471733 C = 5578.918367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.083 0.917 4 C -0.104 4.104 5 C 0.092 3.908 6 H 0.094 0.906 7 N -0.842 5.842 8 C 0.023 3.977 9 N -0.519 5.519 10 C 0.062 3.938 11 C 0.061 3.939 12 O -0.377 6.377 13 C 0.194 3.806 14 C -0.509 4.509 15 H 0.067 0.933 16 C 0.055 3.945 17 N -0.901 5.901 18 Si 0.906 3.094 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.061 3.939 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.345 0.655 29 H 0.333 0.667 30 H 0.085 0.915 31 H 0.021 0.979 32 H 0.082 0.918 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.035 0.965 36 H 0.002 0.998 37 H 0.001 0.999 38 H 0.263 0.737 39 H 0.073 0.927 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.596 -6.195 -3.832 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.101 0.899 4 C -0.142 4.142 5 C -0.020 4.020 6 H 0.112 0.888 7 N -0.370 5.370 8 C -0.107 4.107 9 N -0.243 5.243 10 C -0.066 4.066 11 C -0.017 4.017 12 O -0.297 6.297 13 C 0.119 3.881 14 C -0.547 4.547 15 H 0.086 0.914 16 C -0.145 4.145 17 N -0.540 5.540 18 Si 0.734 3.266 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.067 4.067 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.158 0.842 29 H 0.144 0.856 30 H 0.103 0.897 31 H 0.039 0.961 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -16.685 -4.991 -4.323 17.944 hybrid contribution 0.856 -1.068 0.798 1.584 sum -15.830 -6.059 -3.526 17.312 Atomic orbital electron populations 1.21770 0.95040 1.01486 1.01817 1.21143 0.94859 1.00863 0.94067 0.89872 1.21627 0.94614 1.00136 0.97843 1.21525 0.94870 0.99015 0.86611 0.88819 1.59037 1.13039 1.22162 1.42753 1.23094 1.01474 0.94309 0.91848 1.61743 1.06715 1.54138 1.01730 1.22143 0.94618 0.97201 0.92620 1.22335 0.92269 0.88346 0.98722 1.87976 1.24101 1.23456 1.94128 1.20186 0.74995 0.97929 0.94970 1.21096 0.91855 0.92199 1.49597 0.91431 1.24942 0.96263 0.98051 0.95274 1.69972 1.01732 1.31550 1.50772 0.86300 0.78693 0.84004 0.77636 1.19421 1.20909 1.20862 1.22148 0.87793 0.98260 0.98506 0.93060 0.92545 0.92473 0.92820 0.91270 0.84180 0.85551 0.89719 0.96134 0.89960 0.94717 0.94246 0.94674 0.98029 0.98079 0.92793 0.90820 0.95647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.20 37.16 0.34 -0.94 16 2 C -0.09 -1.02 2.88 -90.54 -0.26 -1.28 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 4 C -0.10 -1.19 4.82 -26.61 -0.13 -1.32 16 5 C 0.09 1.23 3.42 -67.57 -0.23 1.00 16 6 H 0.09 1.50 8.14 -51.92 -0.42 1.07 16 7 N -0.84 -10.05 9.26 -4.54 -0.04 -10.09 16 8 C 0.02 0.33 4.63 -3.77 -0.02 0.31 16 9 N -0.52 -8.01 4.67 -234.58 -1.10 -9.11 16 10 C 0.06 0.96 5.52 -3.82 -0.02 0.94 16 11 C 0.06 1.15 5.57 37.16 0.21 1.36 16 12 O -0.38 -9.24 10.23 -35.23 -0.36 -9.60 16 13 C 0.19 5.38 5.69 36.01 0.20 5.58 16 14 C -0.51 -15.21 9.43 -34.44 -0.32 -15.54 16 15 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 18 Si 0.91 22.15 29.54 -169.99 -5.02 17.13 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.06 0.76 4.75 -3.83 -0.02 0.74 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.35 4.11 9.04 -39.29 -0.36 3.75 16 29 H 0.33 3.38 8.99 -39.29 -0.35 3.03 16 30 H 0.08 1.43 5.79 -51.93 -0.30 1.13 16 31 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.64 6.05 -51.93 -0.31 0.33 16 36 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 37 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 40 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 317.77 15.07 4.79 4.79 Total: -1.00 -31.38 317.77 -8.55 -39.93 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.21 Total: 1.04 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -0.35 Total: -7.63 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.40 Total: -45.66 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.36 Total: -9.60 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.38 -8.55 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385227015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.073 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds