Wall clock time and date at job start Mon Mar 30 2020 04:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 109.49627 * 2 1 4 4 C 1.53117 * 109.50297 * 239.92513 * 2 1 3 5 5 C 1.53114 * 109.21172 * 182.36953 * 4 2 1 6 6 H 1.09007 * 109.50692 * 297.74546 * 5 4 2 7 7 N 1.46897 * 109.50540 * 177.62607 * 5 4 2 8 8 C 1.53168 * 109.20718 * 57.62297 * 5 4 2 9 9 N 1.46839 * 109.55913 * 300.85912 * 8 5 4 10 10 C 1.46903 * 111.00022 * 185.83625 * 9 8 5 11 11 C 1.53000 * 109.47052 * 52.15093 * 10 9 8 12 12 O 1.42891 * 109.47502 * 62.28665 * 11 10 9 13 13 C 1.42897 * 114.00331 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47581 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99565 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99973 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00361 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99694 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47231 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46954 * 120.00481 * 18 16 14 21 21 H 1.48497 * 109.47112 * 240.00005 * 18 16 14 22 22 C 1.46849 * 111.19765 * 61.74489 * 9 8 5 23 23 H 1.09000 * 109.46360 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.46947 * 300.07573 * 1 2 3 25 25 H 1.09004 * 109.47122 * 60.07754 * 1 2 3 26 26 H 1.08993 * 109.52576 * 302.30729 * 4 2 1 27 27 H 1.09001 * 109.52209 * 62.43502 * 4 2 1 28 28 H 1.00905 * 111.00435 * 180.02562 * 7 5 4 29 29 H 1.00901 * 111.00295 * 303.95501 * 7 5 4 30 30 H 1.09003 * 109.44540 * 180.83288 * 8 5 4 31 31 H 1.09002 * 109.43617 * 60.88638 * 8 5 4 32 32 H 1.09010 * 109.46848 * 172.14509 * 10 9 8 33 33 H 1.08999 * 109.47296 * 292.14029 * 10 9 8 34 34 H 1.08998 * 109.47161 * 182.29815 * 11 10 9 35 35 H 1.09002 * 109.46356 * 302.28772 * 11 10 9 36 36 H 1.09001 * 109.47527 * 300.00877 * 13 12 11 37 37 H 1.09000 * 109.46816 * 60.00309 * 13 12 11 38 38 H 0.97003 * 120.00344 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.46317 * 178.24305 * 22 9 8 40 40 H 1.09002 * 109.46549 * 58.27075 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2490 5 6 3.5712 -0.7713 -1.2127 6 1 3.9678 0.2439 -1.2313 7 7 4.0665 -1.5136 -2.3795 8 6 4.0230 -1.4728 0.0718 9 7 3.5094 -0.7424 1.2375 10 6 4.0374 -1.3067 2.4869 11 6 5.5626 -1.3936 2.4027 12 8 6.1073 -0.0805 2.2577 13 6 7.5332 -0.0492 2.1700 14 6 7.9961 1.3772 2.0209 15 1 7.2736 2.1796 1.9960 16 6 9.3421 1.6579 1.9172 17 7 10.2218 0.6809 1.9480 18 14 9.9159 3.4260 1.7330 19 1 8.7382 4.3305 1.7267 20 1 10.8045 3.7789 2.8693 21 1 10.6613 3.5741 0.4573 22 6 2.0410 -0.7239 1.2478 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5150 0.8892 25 1 -0.3633 0.5126 -0.8907 26 1 1.6454 -1.7386 -1.2697 27 1 1.7148 -0.1868 -2.1399 28 1 5.0745 -1.5595 -2.3778 29 1 3.6629 -2.4376 -2.4183 30 1 5.1122 -1.4960 0.1088 31 1 3.6375 -2.4923 0.0831 32 1 3.7555 -0.6660 3.3226 33 1 3.6243 -2.3040 2.6383 34 1 5.9513 -1.8499 3.3131 35 1 5.8449 -2.0011 1.5428 36 1 7.9625 -0.4773 3.0758 37 1 7.8568 -0.6288 1.3055 38 1 11.1687 0.8783 1.8747 39 1 1.6906 -0.2030 2.1388 40 1 1.6649 -1.7469 1.2537 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385227015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:25 Heat of formation + Delta-G solvation = -80.744359 kcal Electronic energy + Delta-G solvation = -18172.222549 eV Core-core repulsion = 15406.188474 eV Total energy + Delta-G solvation = -2766.034075 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.55331 -38.51582 -35.88130 -35.08491 -34.71623 -30.76888 -29.39310 -28.75746 -27.48301 -25.11765 -24.45599 -22.67261 -21.64534 -20.76839 -18.62356 -17.57929 -17.47016 -16.80327 -16.52140 -16.21372 -15.81048 -15.57800 -15.35879 -14.94032 -14.46877 -14.16704 -13.76953 -13.69501 -13.54750 -13.10634 -12.86943 -12.81570 -12.73485 -12.45278 -12.32769 -12.18027 -11.91274 -11.54674 -11.42869 -11.30199 -11.17928 -10.86284 -10.20579 -9.73508 -9.17167 -8.33025 -6.44811 1.39086 1.40383 1.55462 2.34382 2.84122 3.00824 3.21015 3.52715 3.82634 3.87420 4.02892 4.09675 4.18394 4.23762 4.28817 4.39573 4.55586 4.60526 4.66283 4.71651 4.77234 4.79918 4.86135 4.88568 4.95943 5.03617 5.15983 5.16228 5.32631 5.35259 5.51242 5.54968 5.95797 6.00443 6.17007 6.29066 6.54147 6.55113 6.84132 7.27537 8.79578 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026514 B = 0.005162 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.785757 B = 5422.471733 C = 5578.918367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 H 0.061 0.939 4 C -0.096 4.096 5 C 0.095 3.905 6 H 0.059 0.941 7 N -0.841 5.841 8 C 0.030 3.970 9 N -0.547 5.547 10 C 0.070 3.930 11 C 0.052 3.948 12 O -0.392 6.392 13 C 0.210 3.790 14 C -0.544 4.544 15 H 0.058 0.942 16 C 0.008 3.992 17 N -0.931 5.931 18 Si 0.981 3.019 19 H -0.266 1.266 20 H -0.270 1.270 21 H -0.271 1.271 22 C 0.062 3.938 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.344 0.656 29 H 0.346 0.654 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.039 0.961 36 H -0.017 1.017 37 H -0.019 1.019 38 H 0.271 0.729 39 H 0.077 0.923 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.976 -6.118 -4.083 19.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 H 0.080 0.920 4 C -0.134 4.134 5 C -0.017 4.017 6 H 0.078 0.922 7 N -0.369 5.369 8 C -0.100 4.100 9 N -0.272 5.272 10 C -0.058 4.058 11 C -0.025 4.025 12 O -0.312 6.312 13 C 0.135 3.865 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.190 4.190 17 N -0.570 5.570 18 Si 0.804 3.196 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.196 1.196 22 C -0.065 4.065 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.001 0.999 37 H -0.001 1.001 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.091 -4.941 -4.575 19.303 hybrid contribution 1.268 -1.173 0.874 1.936 sum -16.822 -6.114 -3.701 18.277 Atomic orbital electron populations 1.21712 0.92764 1.02440 1.02485 1.21131 0.96639 0.99440 0.93573 0.92015 1.21567 0.92701 1.01066 0.98027 1.21410 0.96392 0.97285 0.86625 0.92233 1.59013 1.13060 1.23001 1.41863 1.22978 0.99550 0.95308 0.92158 1.61715 1.08837 1.54929 1.01717 1.22069 0.91827 0.99020 0.92883 1.22673 0.94670 0.85973 0.99187 1.87929 1.22005 1.27050 1.94198 1.19783 0.76890 0.96798 0.93038 1.21382 0.92631 0.92844 1.51325 0.92346 1.25927 0.95969 1.03130 0.94016 1.70069 1.02391 1.34039 1.50538 0.85162 0.78295 0.77779 0.78339 1.19004 1.19500 1.19582 1.22211 0.85740 0.99342 0.99198 0.91899 0.91986 0.91797 0.91257 0.91043 0.84382 0.84073 0.92890 0.94385 0.90051 0.91513 0.93493 0.94339 0.99907 1.00088 0.92055 0.90422 0.94033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.20 71.99 0.66 -1.42 16 2 C -0.09 -1.87 2.88 -10.74 -0.03 -1.90 16 3 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 4 C -0.10 -2.03 4.82 30.67 0.15 -1.88 16 5 C 0.10 2.54 3.42 45.01 0.15 2.69 16 6 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 7 N -0.84 -19.62 9.26 -168.28 -1.56 -21.18 16 8 C 0.03 0.87 4.63 86.37 0.40 1.26 16 9 N -0.55 -16.53 4.67 -896.09 -4.18 -20.72 16 10 C 0.07 2.09 5.52 86.30 0.48 2.57 16 11 C 0.05 1.99 5.57 71.98 0.40 2.39 16 12 O -0.39 -19.85 10.23 -148.98 -1.52 -21.38 16 13 C 0.21 12.15 5.69 71.24 0.41 12.56 16 14 C -0.54 -33.37 9.43 25.60 0.24 -33.12 16 15 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 16 C 0.01 0.47 5.46 84.66 0.46 0.93 16 17 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 18 Si 0.98 45.38 29.54 68.60 2.03 47.40 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 22 C 0.06 1.43 4.75 86.32 0.41 1.84 16 23 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.34 8.27 9.04 -89.69 -0.81 7.46 16 29 H 0.35 6.51 8.99 -89.69 -0.81 5.70 16 30 H 0.05 1.84 5.79 -2.39 -0.01 1.83 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.44 6.05 -2.39 -0.01 1.43 16 36 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 37 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 38 H 0.27 15.22 8.31 -92.71 -0.77 14.44 16 39 H 0.08 1.71 8.12 -2.39 -0.02 1.69 16 40 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -68.10 317.77 -1.84 -69.94 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -0.61 Total: 16.50 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 3.73 Total: -14.09 kcal Atomic # 7 Polarization: -92.91 SS G_CDS: -5.46 Total: -98.37 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -1.52 Total: -21.38 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -68.10 -1.84 -69.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385227015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.808 kcal (2) G-P(sol) polarization free energy of solvation -68.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds