Wall clock time and date at job start Mon Mar 30 2020 04:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.49802 * 2 1 4 4 C 1.53116 * 109.50271 * 120.07318 * 2 1 3 5 5 C 1.53201 * 109.11699 * 177.60071 * 4 2 1 6 6 H 1.08997 * 109.52883 * 62.33639 * 5 4 2 7 7 N 1.46898 * 109.49360 * 182.42998 * 5 4 2 8 8 C 1.53040 * 109.29803 * 302.37229 * 5 4 2 9 9 N 1.46844 * 109.52187 * 59.17493 * 8 5 4 10 10 C 1.46905 * 110.99976 * 174.15719 * 9 8 5 11 11 C 1.52996 * 109.47405 * 199.93296 * 10 9 8 12 12 O 1.42898 * 109.47002 * 64.59159 * 11 10 9 13 13 C 1.42900 * 114.00337 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47276 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00544 * 359.97438 * 14 13 12 16 16 C 1.37887 * 119.99691 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00181 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99748 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47187 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47251 * 119.99973 * 18 16 14 21 21 H 1.48498 * 109.47412 * 240.00031 * 18 16 14 22 22 C 1.46838 * 111.20288 * 298.26056 * 9 8 5 23 23 H 1.08998 * 109.47147 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47175 * 299.99796 * 1 2 3 25 25 H 1.09000 * 109.47023 * 60.00262 * 1 2 3 26 26 H 1.08997 * 109.52544 * 297.54664 * 4 2 1 27 27 H 1.09001 * 109.52264 * 57.73266 * 4 2 1 28 28 H 1.00902 * 111.00262 * 179.82187 * 7 5 4 29 29 H 1.00910 * 110.99746 * 303.76859 * 7 5 4 30 30 H 1.09003 * 109.46118 * 299.16200 * 8 5 4 31 31 H 1.08996 * 109.45407 * 179.19113 * 8 5 4 32 32 H 1.08997 * 109.47441 * 319.94008 * 10 9 8 33 33 H 1.09006 * 109.46480 * 79.93211 * 10 9 8 34 34 H 1.08996 * 109.47149 * 184.58597 * 11 10 9 35 35 H 1.09004 * 109.47255 * 304.59518 * 11 10 9 36 36 H 1.09002 * 109.46861 * 300.00114 * 13 12 11 37 37 H 1.09004 * 109.47232 * 59.99464 * 13 12 11 38 38 H 0.97000 * 120.00018 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.46078 * 301.72499 * 22 9 8 40 40 H 1.08998 * 109.46272 * 181.75564 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7233 1.2490 5 6 3.5720 -0.7707 1.2101 6 1 3.9686 0.2443 1.2294 7 7 4.0692 -1.5139 2.3756 8 6 4.0238 -1.4714 -0.0733 9 7 3.5093 -0.7408 -1.2385 10 6 4.0373 -1.3041 -2.4883 11 6 3.9078 -0.2701 -3.6085 12 8 4.7343 0.8577 -3.3137 13 6 4.6860 1.8882 -4.3025 14 6 5.5895 3.0219 -3.8911 15 1 6.1447 2.9618 -2.9668 16 6 5.7072 4.1361 -4.6948 17 7 5.0314 4.2091 -5.8207 18 14 6.8277 5.5411 -4.1853 19 1 7.4710 5.2154 -2.8870 20 1 7.8737 5.7405 -5.2204 21 1 6.0288 6.7848 -4.0429 22 6 2.0410 -0.7230 -1.2482 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.7150 -0.1866 2.1399 27 1 1.6458 -1.7388 1.2693 28 1 5.0771 -1.5616 2.3710 29 1 3.7304 -1.1076 3.2349 30 1 3.6389 -2.4912 -0.0851 31 1 5.1129 -1.4939 -0.1105 32 1 5.0870 -1.5651 -2.3543 33 1 3.4714 -2.1978 -2.7515 34 1 4.2236 -0.7152 -4.5520 35 1 2.8693 0.0515 -3.6880 36 1 5.0176 1.4881 -5.2607 37 1 3.6635 2.2544 -4.3960 38 1 5.1139 4.9931 -6.3859 39 1 1.6655 -1.7462 -1.2545 40 1 1.6900 -0.2019 -2.1389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385227017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:32 Heat of formation + Delta-G solvation = -82.678331 kcal Electronic energy + Delta-G solvation = -18044.335522 eV Core-core repulsion = 15278.217584 eV Total energy + Delta-G solvation = -2766.117938 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43201 -38.46909 -35.89014 -34.95306 -34.74235 -30.98980 -29.35974 -28.57701 -27.61039 -25.15747 -24.43175 -22.23333 -22.05077 -20.61159 -18.61583 -17.46928 -17.31161 -16.70266 -16.43223 -16.19131 -15.99652 -15.70222 -15.47724 -14.90315 -14.46700 -14.24921 -13.64314 -13.59280 -13.44192 -13.14577 -12.92032 -12.79930 -12.71585 -12.56010 -12.42768 -12.16166 -11.83206 -11.61013 -11.41401 -11.25702 -11.17504 -10.85281 -10.16903 -9.66053 -9.16177 -8.31830 -6.43651 1.38938 1.40670 1.55439 2.35023 2.79918 3.01712 3.23992 3.58417 3.79410 3.85838 4.01373 4.19029 4.26466 4.29045 4.38766 4.48271 4.55575 4.57312 4.64217 4.72010 4.79409 4.85453 4.87244 4.91455 4.95003 4.98983 5.09392 5.19624 5.24203 5.32897 5.47476 5.55883 5.98001 6.08833 6.14747 6.30839 6.57818 6.59989 6.87435 7.28714 8.80914 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024713 B = 0.005029 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.727165 B = 5565.826700 C = 5709.267690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.055 0.945 4 C -0.097 4.097 5 C 0.094 3.906 6 H 0.024 0.976 7 N -0.844 5.844 8 C 0.072 3.928 9 N -0.553 5.553 10 C 0.071 3.929 11 C 0.060 3.940 12 O -0.395 6.395 13 C 0.210 3.790 14 C -0.544 4.544 15 H 0.058 0.942 16 C 0.006 3.994 17 N -0.931 5.931 18 Si 0.983 3.017 19 H -0.266 1.266 20 H -0.270 1.270 21 H -0.271 1.271 22 C 0.062 3.938 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.347 0.653 29 H 0.352 0.648 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.035 0.965 36 H -0.016 1.016 37 H -0.019 1.019 38 H 0.270 0.730 39 H 0.044 0.956 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.601 -11.911 13.700 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.073 0.927 4 C -0.135 4.135 5 C -0.018 4.018 6 H 0.042 0.958 7 N -0.376 5.376 8 C -0.057 4.057 9 N -0.278 5.278 10 C -0.057 4.057 11 C -0.017 4.017 12 O -0.315 6.315 13 C 0.134 3.866 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.192 4.192 17 N -0.571 5.571 18 Si 0.806 3.194 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.196 1.196 22 C -0.066 4.066 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.160 0.840 29 H 0.165 0.835 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.002 0.998 37 H -0.002 1.002 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.756 -11.939 13.449 19.211 hybrid contribution 0.513 0.910 -0.424 1.127 sum -6.243 -11.029 13.025 18.173 Atomic orbital electron populations 1.21724 0.93116 1.02485 1.02255 1.21121 0.96556 0.99177 0.94068 0.92674 1.21587 0.93522 1.00978 0.97406 1.21226 0.95836 0.94397 0.90322 0.95769 1.58667 1.15858 1.58493 1.04533 1.21944 0.99387 0.95027 0.89294 1.61597 1.08618 1.55371 1.02198 1.22028 1.00989 0.94128 0.88522 1.22566 0.93901 0.88008 0.97246 1.87890 1.66675 1.28963 1.47929 1.19781 0.94597 0.85615 0.86575 1.21393 1.26975 1.02301 1.07508 0.92337 1.25957 0.97608 1.01160 0.94476 1.70077 1.42864 1.30852 1.13295 0.85145 0.78116 0.77563 0.78625 1.18981 1.19471 1.19601 1.22188 0.86636 0.99098 0.98680 0.91621 0.91442 0.92895 0.90945 0.91002 0.83985 0.83480 0.93901 0.91648 0.90377 0.91026 0.93471 0.94685 0.99847 1.00171 0.92066 0.93756 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.20 71.98 0.66 -1.96 16 2 C -0.09 -2.17 2.88 -10.74 -0.03 -2.20 16 3 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.10 -2.03 4.84 30.70 0.15 -1.88 16 5 C 0.09 2.19 3.41 45.00 0.15 2.35 16 6 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 7 N -0.84 -15.33 9.25 -168.35 -1.56 -16.88 16 8 C 0.07 1.86 5.00 86.33 0.43 2.30 16 9 N -0.55 -17.15 4.53 -896.40 -4.06 -21.21 16 10 C 0.07 2.18 5.39 86.30 0.47 2.65 16 11 C 0.06 2.35 6.13 71.98 0.44 2.79 16 12 O -0.39 -20.32 10.27 -148.98 -1.53 -21.84 16 13 C 0.21 12.28 5.69 71.23 0.41 12.69 16 14 C -0.54 -33.58 9.43 25.60 0.24 -33.34 16 15 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 16 C 0.01 0.37 5.46 84.66 0.46 0.83 16 17 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 18 Si 0.98 45.42 29.54 68.60 2.03 47.45 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 C 0.06 1.67 4.57 86.33 0.39 2.06 16 23 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.35 5.72 9.04 -89.69 -0.81 4.91 16 29 H 0.35 5.16 9.00 -89.69 -0.81 4.35 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.75 7.93 -2.39 -0.02 1.73 16 32 H 0.08 2.40 7.79 -2.39 -0.02 2.38 16 33 H 0.07 1.77 8.00 -2.38 -0.02 1.75 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 35 H 0.03 1.36 6.71 -2.38 -0.02 1.34 16 36 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 37 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 38 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 1.81 6.65 -2.39 -0.02 1.79 16 Total: -1.00 -68.96 319.14 -1.67 -70.63 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -0.61 Total: 12.45 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 3.78 Total: -13.72 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -5.33 Total: -94.96 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -1.53 Total: -21.84 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -68.96 -1.67 -70.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385227017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.052 kcal (2) G-P(sol) polarization free energy of solvation -68.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds