Wall clock time and date at job start Mon Mar 30 2020 04:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.45356 * 2 1 4 4 C 1.53036 * 109.46167 * 240.02324 * 2 1 3 5 5 C 1.53129 * 109.30712 * 180.82822 * 4 2 1 6 6 H 1.09000 * 109.49266 * 297.71169 * 5 4 2 7 7 N 1.46898 * 109.55628 * 177.52061 * 5 4 2 8 8 C 1.53123 * 109.15931 * 57.59477 * 5 4 2 9 9 C 1.53039 * 109.31189 * 302.40768 * 8 5 4 10 10 N 1.46842 * 109.52266 * 59.15550 * 9 8 5 11 11 C 1.46910 * 110.99703 * 174.16402 * 10 9 8 12 12 C 1.53001 * 109.47153 * 66.04611 * 11 10 9 13 13 O 1.42900 * 109.47012 * 65.00000 * 12 11 10 14 14 C 1.42893 * 114.00058 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.47413 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99609 * 0.02562 * 15 14 13 17 17 C 1.37868 * 120.00060 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00109 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00209 * 0.02562 * 17 15 14 20 20 H 1.48508 * 109.46956 * 89.99985 * 19 17 15 21 21 H 1.48504 * 109.47058 * 209.99814 * 19 17 15 22 22 H 1.48498 * 109.47132 * 329.99868 * 19 17 15 23 23 H 1.08993 * 109.46913 * 300.02874 * 1 2 3 24 24 H 1.09000 * 109.46466 * 60.03216 * 1 2 3 25 25 H 1.08996 * 109.47097 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.50390 * 300.74120 * 4 2 1 27 27 H 1.08997 * 109.50400 * 60.82862 * 4 2 1 28 28 H 1.00895 * 110.99879 * 180.30217 * 7 5 4 29 29 H 1.00899 * 110.99683 * 304.25014 * 7 5 4 30 30 H 1.09002 * 109.50371 * 182.44317 * 8 5 4 31 31 H 1.09003 * 109.50070 * 62.36477 * 8 5 4 32 32 H 1.08995 * 109.46501 * 179.17754 * 9 8 5 33 33 H 1.09002 * 109.45552 * 299.15457 * 9 8 5 34 34 H 1.08996 * 109.46709 * 186.04933 * 11 10 9 35 35 H 1.09002 * 109.46552 * 306.04948 * 11 10 9 36 36 H 1.08996 * 109.46718 * 184.99805 * 12 11 10 37 37 H 1.08997 * 109.47067 * 305.00295 * 12 11 10 38 38 H 1.08998 * 109.47471 * 300.00201 * 14 13 12 39 39 H 1.09005 * 109.47284 * 60.00385 * 14 13 12 40 40 H 0.96995 * 120.00456 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5711 -0.7370 -1.2359 6 1 3.9459 0.2860 -1.2682 7 7 4.0657 -1.4794 -2.4030 8 6 4.0548 -1.4188 0.0469 9 6 3.4864 -0.6777 1.2593 10 7 2.0193 -0.6917 1.1994 11 6 1.4372 -0.1104 2.4166 12 6 1.7844 1.3780 2.4874 13 8 1.1573 2.0655 1.4029 14 6 1.4185 3.4701 1.3764 15 6 0.7117 4.0904 0.1988 16 1 0.1216 3.4737 -0.4629 17 6 0.8183 5.4452 -0.0337 18 7 0.2011 5.9867 -1.0611 19 14 1.8395 6.5117 1.1104 20 1 3.2389 6.5687 0.6165 21 1 1.2713 7.8833 1.1471 22 1 1.8202 5.9312 2.4771 23 1 -0.3633 0.5143 0.8897 24 1 -0.3632 0.5134 -0.8903 25 1 -0.3633 -1.0276 0.0005 26 1 1.6660 -1.7448 -1.2575 27 1 1.6890 -0.1987 -2.1399 28 1 5.0742 -1.5077 -2.4127 29 1 3.6776 -2.4104 -2.4303 30 1 5.1440 -1.3948 0.0834 31 1 3.7130 -2.4538 0.0601 32 1 3.8174 -1.1698 2.1738 33 1 3.8401 0.3533 1.2532 34 1 0.3541 -0.2303 2.3943 35 1 1.8412 -0.6198 3.2915 36 1 1.4293 1.7893 3.4322 37 1 2.8652 1.5025 2.4201 38 1 1.0556 3.9246 2.2982 39 1 2.4917 3.6385 1.2863 40 1 0.2764 6.9397 -1.2250 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385241763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:53 Heat of formation + Delta-G solvation = -46.338118 kcal Electronic energy + Delta-G solvation = -18904.419451 eV Core-core repulsion = 16139.877343 eV Total energy + Delta-G solvation = -2764.542108 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.58288 -36.95181 -34.92925 -32.65147 -32.10686 -30.70423 -28.30032 -26.93318 -26.46998 -23.30365 -22.16859 -21.70034 -20.57515 -19.18211 -16.88202 -16.09107 -16.03074 -15.71622 -15.07588 -14.78872 -14.38773 -14.02721 -13.71123 -13.66561 -12.92440 -12.71803 -12.38735 -12.12654 -11.89631 -11.80165 -11.43372 -11.28399 -10.99183 -10.87641 -10.81275 -10.76703 -10.51853 -10.34569 -9.97721 -9.87233 -9.20886 -8.85055 -8.62140 -8.50293 -7.77107 -6.13951 -4.13100 3.21468 3.29047 3.29782 4.15095 4.32698 4.55169 4.66794 4.93791 5.00913 5.17397 5.19514 5.37644 5.50718 5.57164 5.61414 5.70467 5.81837 5.82674 5.88924 5.94728 6.06572 6.12191 6.20168 6.26858 6.38635 6.44982 6.52968 6.60697 6.87647 6.92445 6.98161 7.18142 7.40398 7.49802 7.51319 7.58456 7.94827 8.61066 8.97409 9.45451 10.98863 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.006869 C = 0.006376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.307321 B = 4075.531665 C = 4390.602188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.075 3.925 3 H 0.089 0.911 4 C -0.102 4.102 5 C 0.087 3.913 6 H 0.079 0.921 7 N -0.844 5.844 8 C -0.145 4.145 9 C 0.055 3.945 10 N -0.531 5.531 11 C 0.056 3.944 12 C 0.018 3.982 13 O -0.365 6.365 14 C 0.164 3.836 15 C -0.516 4.516 16 H 0.084 0.916 17 C 0.073 3.927 18 N -0.894 5.894 19 Si 0.873 3.127 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.268 1.268 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.040 0.960 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.336 0.664 29 H 0.336 0.664 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.001 0.999 39 H -0.006 1.006 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.931 -14.459 4.785 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.033 4.033 3 H 0.106 0.894 4 C -0.140 4.140 5 C -0.024 4.024 6 H 0.097 0.903 7 N -0.371 5.371 8 C -0.185 4.185 9 C -0.074 4.074 10 N -0.255 5.255 11 C -0.072 4.072 12 C -0.061 4.061 13 O -0.284 6.284 14 C 0.089 3.911 15 C -0.554 4.554 16 H 0.102 0.898 17 C -0.129 4.129 18 N -0.532 5.532 19 Si 0.700 3.300 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.193 1.193 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.019 0.981 39 H 0.012 0.988 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.263 -14.289 4.049 16.118 hybrid contribution 1.501 1.087 1.630 2.468 sum 7.763 -13.202 5.679 16.334 Atomic orbital electron populations 1.21732 0.94137 0.99864 1.03076 1.21897 0.96054 0.97817 0.87483 0.89353 1.21667 0.93252 1.00858 0.98238 1.21562 0.96247 0.97743 0.86889 0.90290 1.58914 1.12589 1.21775 1.43829 1.22399 0.99294 1.00430 0.96348 1.21979 0.88747 0.98872 0.97781 1.62211 1.05941 1.54739 1.02647 1.22306 1.01576 0.90717 0.92610 1.23105 0.96734 0.94533 0.91760 1.88083 1.72629 1.21928 1.45756 1.20615 0.94821 0.78177 0.97504 1.20855 1.31120 0.93301 1.10126 0.89807 1.24755 0.95444 0.97460 0.95199 1.69869 1.42949 1.12250 1.28121 0.86894 0.80908 0.80357 0.81819 1.20041 1.20767 1.19259 0.91188 0.92472 0.94091 0.92275 0.90928 0.85192 0.85137 0.92314 0.91605 0.91506 0.94565 0.89496 0.90488 0.94127 0.94510 0.98129 0.98793 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.20 37.16 0.30 -1.92 16 2 C 0.08 1.25 1.77 -67.72 -0.12 1.13 16 3 H 0.09 1.81 5.58 -51.93 -0.29 1.52 16 4 C -0.10 -1.52 4.92 -26.65 -0.13 -1.66 16 5 C 0.09 1.16 3.32 -67.58 -0.22 0.94 16 6 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 7 N -0.84 -9.72 9.26 -4.56 -0.04 -9.76 16 8 C -0.14 -1.70 5.66 -26.65 -0.15 -1.85 16 9 C 0.06 0.73 5.06 -3.84 -0.02 0.71 16 10 N -0.53 -7.77 4.69 -226.68 -1.06 -8.83 16 11 C 0.06 0.80 5.51 -3.82 -0.02 0.78 16 12 C 0.02 0.30 5.75 37.16 0.21 0.51 16 13 O -0.36 -7.84 5.16 -35.23 -0.18 -8.02 16 14 C 0.16 4.05 4.76 36.01 0.17 4.22 16 15 C -0.52 -14.92 9.99 -34.44 -0.34 -15.26 16 16 H 0.08 2.64 8.06 -52.49 -0.42 2.21 16 17 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 18 N -0.89 -27.33 13.96 55.43 0.77 -26.56 16 19 Si 0.87 21.36 27.47 -169.99 -4.67 16.69 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 23 H 0.07 1.27 5.18 -51.93 -0.27 1.01 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.34 3.26 9.04 -39.29 -0.36 2.91 16 29 H 0.34 3.41 8.98 -39.29 -0.35 3.05 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.77 8.06 -51.93 -0.42 0.36 16 33 H 0.04 0.53 6.65 -51.93 -0.35 0.19 16 34 H 0.09 1.27 6.32 -51.93 -0.33 0.94 16 35 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.04 0.61 6.46 -51.93 -0.34 0.28 16 38 H 0.00 0.03 7.20 -51.93 -0.37 -0.35 16 39 H -0.01 -0.14 7.57 -51.93 -0.39 -0.53 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 302.30 15.07 4.56 4.56 Total: -1.00 -30.05 302.30 -7.90 -37.95 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.85 Total: 4.33 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -0.42 Total: -10.36 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.33 Total: -45.14 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.18 Total: -8.02 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.05 -7.90 -37.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385241763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.391 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds