Wall clock time and date at job start Mon Mar 30 2020 04:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.45356 * 2 1 4 4 C 1.53036 * 109.46167 * 240.02324 * 2 1 3 5 5 C 1.53129 * 109.30712 * 180.82822 * 4 2 1 6 6 H 1.09000 * 109.49266 * 297.71169 * 5 4 2 7 7 N 1.46898 * 109.55628 * 177.52061 * 5 4 2 8 8 C 1.53123 * 109.15931 * 57.59477 * 5 4 2 9 9 C 1.53039 * 109.31189 * 302.40768 * 8 5 4 10 10 N 1.46842 * 109.52266 * 59.15550 * 9 8 5 11 11 C 1.46910 * 110.99703 * 174.16402 * 10 9 8 12 12 C 1.53001 * 109.47153 * 66.04611 * 11 10 9 13 13 O 1.42900 * 109.47012 * 65.00000 * 12 11 10 14 14 C 1.42893 * 114.00058 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.47413 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99609 * 0.02562 * 15 14 13 17 17 C 1.37868 * 120.00060 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00109 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00209 * 0.02562 * 17 15 14 20 20 H 1.48508 * 109.46956 * 89.99985 * 19 17 15 21 21 H 1.48504 * 109.47058 * 209.99814 * 19 17 15 22 22 H 1.48498 * 109.47132 * 329.99868 * 19 17 15 23 23 H 1.08993 * 109.46913 * 300.02874 * 1 2 3 24 24 H 1.09000 * 109.46466 * 60.03216 * 1 2 3 25 25 H 1.08996 * 109.47097 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.50390 * 300.74120 * 4 2 1 27 27 H 1.08997 * 109.50400 * 60.82862 * 4 2 1 28 28 H 1.00895 * 110.99879 * 180.30217 * 7 5 4 29 29 H 1.00899 * 110.99683 * 304.25014 * 7 5 4 30 30 H 1.09002 * 109.50371 * 182.44317 * 8 5 4 31 31 H 1.09003 * 109.50070 * 62.36477 * 8 5 4 32 32 H 1.08995 * 109.46501 * 179.17754 * 9 8 5 33 33 H 1.09002 * 109.45552 * 299.15457 * 9 8 5 34 34 H 1.08996 * 109.46709 * 186.04933 * 11 10 9 35 35 H 1.09002 * 109.46552 * 306.04948 * 11 10 9 36 36 H 1.08996 * 109.46718 * 184.99805 * 12 11 10 37 37 H 1.08997 * 109.47067 * 305.00295 * 12 11 10 38 38 H 1.08998 * 109.47471 * 300.00201 * 14 13 12 39 39 H 1.09005 * 109.47284 * 60.00385 * 14 13 12 40 40 H 0.96995 * 120.00456 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5711 -0.7370 -1.2359 6 1 3.9459 0.2860 -1.2682 7 7 4.0657 -1.4794 -2.4030 8 6 4.0548 -1.4188 0.0469 9 6 3.4864 -0.6777 1.2593 10 7 2.0193 -0.6917 1.1994 11 6 1.4372 -0.1104 2.4166 12 6 1.7844 1.3780 2.4874 13 8 1.1573 2.0655 1.4029 14 6 1.4185 3.4701 1.3764 15 6 0.7117 4.0904 0.1988 16 1 0.1216 3.4737 -0.4629 17 6 0.8183 5.4452 -0.0337 18 7 0.2011 5.9867 -1.0611 19 14 1.8395 6.5117 1.1104 20 1 3.2389 6.5687 0.6165 21 1 1.2713 7.8833 1.1471 22 1 1.8202 5.9312 2.4771 23 1 -0.3633 0.5143 0.8897 24 1 -0.3632 0.5134 -0.8903 25 1 -0.3633 -1.0276 0.0005 26 1 1.6660 -1.7448 -1.2575 27 1 1.6890 -0.1987 -2.1399 28 1 5.0742 -1.5077 -2.4127 29 1 3.6776 -2.4104 -2.4303 30 1 5.1440 -1.3948 0.0834 31 1 3.7130 -2.4538 0.0601 32 1 3.8174 -1.1698 2.1738 33 1 3.8401 0.3533 1.2532 34 1 0.3541 -0.2303 2.3943 35 1 1.8412 -0.6198 3.2915 36 1 1.4293 1.7893 3.4322 37 1 2.8652 1.5025 2.4201 38 1 1.0556 3.9246 2.2982 39 1 2.4917 3.6385 1.2863 40 1 0.2764 6.9397 -1.2250 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385241763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:52 Heat of formation + Delta-G solvation = -69.437948 kcal Electronic energy + Delta-G solvation = -18905.421135 eV Core-core repulsion = 16139.877343 eV Total energy + Delta-G solvation = -2765.543792 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.81849 -38.45683 -36.18540 -34.80597 -33.36562 -31.90151 -30.13523 -28.31452 -27.77098 -24.47843 -24.05165 -23.13771 -21.70626 -20.46753 -19.00993 -17.56200 -17.41834 -16.95369 -16.54569 -16.09475 -15.95548 -15.38511 -15.09400 -14.97406 -14.66719 -14.03176 -13.84076 -13.59731 -13.28214 -13.10280 -12.92605 -12.74110 -12.63026 -12.41930 -12.32468 -11.94559 -11.87022 -11.71473 -11.69529 -11.35419 -11.16137 -10.91489 -10.23694 -9.55887 -9.05809 -8.38069 -6.44829 1.28815 1.31043 1.41583 2.25933 2.90173 2.94426 3.18989 3.59066 3.85743 3.93665 4.10962 4.15883 4.29899 4.32921 4.43799 4.52139 4.56017 4.62872 4.67471 4.73397 4.76896 4.85729 4.93971 4.97658 5.01630 5.07684 5.11796 5.23974 5.32950 5.42706 5.47531 5.58088 5.92347 6.19743 6.27752 6.29041 6.59214 6.66744 6.72359 7.19210 8.78719 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.006869 C = 0.006376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.307321 B = 4075.531665 C = 4390.602188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.081 3.919 3 H 0.046 0.954 4 C -0.097 4.097 5 C 0.092 3.908 6 H 0.051 0.949 7 N -0.849 5.849 8 C -0.134 4.134 9 C 0.051 3.949 10 N -0.524 5.524 11 C 0.059 3.941 12 C 0.010 3.990 13 O -0.378 6.378 14 C 0.176 3.824 15 C -0.534 4.534 16 H 0.035 0.965 17 C 0.014 3.986 18 N -0.941 5.941 19 Si 0.949 3.051 20 H -0.263 1.263 21 H -0.273 1.273 22 H -0.248 1.248 23 H 0.055 0.945 24 H 0.032 0.968 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.349 0.651 29 H 0.347 0.653 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.017 0.983 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.053 0.947 37 H 0.042 0.958 38 H 0.007 0.993 39 H 0.000 1.000 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.873 -15.820 6.950 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.027 4.027 3 H 0.064 0.936 4 C -0.135 4.135 5 C -0.020 4.020 6 H 0.069 0.931 7 N -0.378 5.378 8 C -0.174 4.174 9 C -0.077 4.077 10 N -0.248 5.248 11 C -0.069 4.069 12 C -0.068 4.068 13 O -0.298 6.298 14 C 0.100 3.900 15 C -0.572 4.572 16 H 0.053 0.947 17 C -0.184 4.184 18 N -0.580 5.580 19 Si 0.771 3.229 20 H -0.188 1.188 21 H -0.198 1.198 22 H -0.172 1.172 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.162 0.838 29 H 0.161 0.839 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.036 0.964 34 H 0.100 0.900 35 H 0.132 0.868 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.024 0.976 39 H 0.017 0.983 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.212 -15.685 6.222 18.766 hybrid contribution 0.842 1.418 0.890 1.874 sum 9.054 -14.267 7.111 18.333 Atomic orbital electron populations 1.21644 0.94844 1.00507 1.01143 1.21658 0.95475 0.96030 0.89546 0.93586 1.21567 0.94788 1.00839 0.96339 1.21366 0.94799 0.96992 0.88873 0.93085 1.58803 1.13680 1.22399 1.42966 1.22319 1.00436 1.00342 0.94276 1.22122 0.87469 0.98374 0.99752 1.62240 1.07121 1.53609 1.01815 1.22423 1.01675 0.89035 0.93754 1.23425 0.96859 0.95820 0.90740 1.88107 1.73399 1.20252 1.48012 1.20264 0.94198 0.80022 0.95472 1.21096 1.31285 0.93640 1.11187 0.94709 1.25767 0.96669 0.98948 0.97006 1.70027 1.44695 1.13009 1.30315 0.85698 0.79073 0.78138 0.79972 1.18823 1.19828 1.17202 0.92639 0.94919 0.91937 0.90862 0.93352 0.83761 0.83904 0.90279 0.90407 0.88801 0.96443 0.89969 0.86765 0.92880 0.93973 0.97572 0.98256 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.37 8.20 71.98 0.59 -3.77 16 2 C 0.08 2.76 1.77 44.94 0.08 2.84 16 3 H 0.05 1.99 5.58 -2.39 -0.01 1.97 16 4 C -0.10 -2.93 4.92 30.65 0.15 -2.77 16 5 C 0.09 2.38 3.32 45.00 0.15 2.53 16 6 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 7 N -0.85 -18.34 9.26 -168.33 -1.56 -19.90 16 8 C -0.13 -2.77 5.66 30.65 0.17 -2.60 16 9 C 0.05 1.22 5.06 86.33 0.44 1.65 16 10 N -0.52 -14.37 4.69 -871.09 -4.09 -18.46 16 11 C 0.06 1.55 5.51 86.30 0.48 2.03 16 12 C 0.01 0.32 5.75 71.98 0.41 0.74 16 13 O -0.38 -16.56 5.16 -148.98 -0.77 -17.33 16 14 C 0.18 8.76 4.76 71.24 0.34 9.10 16 15 C -0.53 -32.22 9.99 25.60 0.26 -31.96 16 16 H 0.03 2.36 8.06 -2.91 -0.02 2.33 16 17 C 0.01 0.84 5.47 84.65 0.46 1.30 16 18 N -0.94 -59.48 13.96 21.44 0.30 -59.18 16 19 Si 0.95 43.91 27.47 68.60 1.88 45.79 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.25 -10.65 6.54 99.48 0.65 -9.99 16 23 H 0.05 2.09 5.18 -2.39 -0.01 2.08 16 24 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.35 6.09 9.04 -89.70 -0.81 5.28 16 29 H 0.35 6.30 8.98 -89.69 -0.81 5.49 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.76 8.06 -2.39 -0.02 1.75 16 33 H 0.02 0.49 6.65 -2.39 -0.02 0.47 16 34 H 0.08 2.26 6.32 -2.39 -0.02 2.25 16 35 H 0.11 2.21 8.06 -2.39 -0.02 2.19 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.04 1.33 6.46 -2.39 -0.02 1.32 16 38 H 0.01 0.32 7.20 -2.39 -0.02 0.30 16 39 H 0.00 -0.01 7.57 -2.38 -0.02 -0.03 16 40 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -67.94 302.30 -1.35 -69.29 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -0.65 Total: 20.71 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 3.53 Total: -20.92 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -5.35 Total: -97.54 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.77 Total: -17.33 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Total: -67.94 -1.35 -69.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385241763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.144 kcal (2) G-P(sol) polarization free energy of solvation -67.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds