Wall clock time and date at job start Mon Mar 30 2020 04:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46370 * 2 1 4 4 C 1.53035 * 109.45422 * 240.02527 * 2 1 3 5 5 C 1.53113 * 109.28158 * 180.81165 * 4 2 1 6 6 H 1.08994 * 109.52540 * 177.55923 * 5 4 2 7 7 N 1.46900 * 109.52213 * 297.68906 * 5 4 2 8 8 C 1.53121 * 109.15845 * 57.65308 * 5 4 2 9 9 C 1.53043 * 109.28141 * 302.34738 * 8 5 4 10 10 N 1.46847 * 109.51881 * 59.17982 * 9 8 5 11 11 C 1.46905 * 110.99612 * 174.16356 * 10 9 8 12 12 C 1.53001 * 109.46879 * 286.66996 * 11 10 9 13 13 O 1.42895 * 109.46938 * 67.63776 * 12 11 10 14 14 C 1.42903 * 113.99318 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46697 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99932 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99807 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00029 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99991 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47249 * 89.99646 * 19 17 15 21 21 H 1.48498 * 109.47281 * 210.00190 * 19 17 15 22 22 H 1.48508 * 109.47188 * 330.00303 * 19 17 15 23 23 H 1.08999 * 109.47051 * 306.61335 * 1 2 3 24 24 H 1.09002 * 109.46572 * 66.60759 * 1 2 3 25 25 H 1.08994 * 109.47399 * 186.61423 * 1 2 3 26 26 H 1.09003 * 109.50552 * 300.75632 * 4 2 1 27 27 H 1.09005 * 109.50075 * 60.83055 * 4 2 1 28 28 H 1.00906 * 110.99991 * 179.97438 * 7 5 4 29 29 H 1.00896 * 110.99783 * 303.94972 * 7 5 4 30 30 H 1.08999 * 109.50649 * 62.28739 * 8 5 4 31 31 H 1.08996 * 109.50375 * 182.40584 * 8 5 4 32 32 H 1.09004 * 109.46024 * 299.16586 * 9 8 5 33 33 H 1.08996 * 109.46228 * 179.19649 * 9 8 5 34 34 H 1.08999 * 109.47489 * 46.67042 * 11 10 9 35 35 H 1.09004 * 109.46602 * 166.66875 * 11 10 9 36 36 H 1.09000 * 109.46740 * 187.63906 * 12 11 10 37 37 H 1.08999 * 109.47176 * 307.63295 * 12 11 10 38 38 H 1.08999 * 109.47460 * 299.99268 * 14 13 12 39 39 H 1.08993 * 109.47501 * 60.00189 * 14 13 12 40 40 H 0.97007 * 120.00224 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5708 -0.7364 -1.2358 6 1 3.9375 -1.2867 -2.1022 7 7 4.0760 0.6423 -1.2799 8 6 4.0545 -1.4192 0.0465 9 6 3.4865 -0.6780 1.2590 10 7 2.0193 -0.6919 1.1994 11 6 1.4375 -0.1106 2.4166 12 6 1.6033 -1.0910 3.5795 13 8 2.9889 -1.2110 3.9074 14 6 3.2549 -2.1088 4.9869 15 6 4.7387 -2.1572 5.2459 16 1 5.4113 -1.5622 4.6459 17 6 5.2376 -2.9610 6.2489 18 7 4.4185 -3.6851 6.9798 19 14 7.0769 -3.0216 6.5695 20 1 7.4407 -1.9799 7.5635 21 1 7.4434 -4.3600 7.0982 22 1 7.8088 -2.7727 5.3015 23 1 -0.3633 0.6129 0.8249 24 1 -0.3632 0.4080 -0.9432 25 1 -0.3634 -1.0207 0.1184 26 1 1.6655 -1.7447 -1.2577 27 1 1.6887 -0.1985 -2.1399 28 1 5.0849 0.6581 -1.2710 29 1 3.7134 1.1347 -2.0824 30 1 3.7121 -2.4540 0.0593 31 1 5.1436 -1.3954 0.0829 32 1 3.8405 0.3529 1.2530 33 1 3.8175 -1.1703 2.1734 34 1 1.9476 0.8232 2.6531 35 1 0.3775 0.0854 2.2548 36 1 1.0552 -0.7222 4.4465 37 1 1.2123 -2.0666 3.2907 38 1 2.7412 -1.7615 5.8833 39 1 2.8984 -3.1054 4.7269 40 1 4.7695 -4.2510 7.6853 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385241764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:56 Heat of formation + Delta-G solvation = -51.722056 kcal Electronic energy + Delta-G solvation = -18436.482014 eV Core-core repulsion = 15671.706440 eV Total energy + Delta-G solvation = -2764.775573 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.31304 -36.70462 -34.80700 -32.72728 -32.03893 -30.45014 -28.13701 -26.89290 -26.53891 -23.27285 -22.16358 -21.63931 -20.47003 -18.92076 -16.36605 -15.99833 -15.78706 -15.49459 -14.99235 -14.84366 -14.44317 -14.17908 -14.10165 -13.28129 -12.96361 -12.75379 -12.05171 -12.03086 -11.78667 -11.71202 -11.45334 -11.23275 -11.08979 -10.85142 -10.77285 -10.59306 -10.51932 -10.17906 -10.06193 -9.70382 -9.02535 -8.74682 -8.64288 -8.06444 -7.73252 -6.06673 -4.07987 3.32468 3.37466 3.42569 4.24792 4.38640 4.55089 4.85555 4.92762 5.05377 5.16452 5.29874 5.38029 5.50258 5.57858 5.63039 5.77855 5.86803 5.90085 5.91838 6.03890 6.09919 6.12744 6.17311 6.25909 6.32794 6.39654 6.49089 6.71445 7.00288 7.13945 7.21593 7.41258 7.50563 7.61992 7.68674 7.83701 8.21736 8.65494 9.06192 9.56746 11.04888 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029317 B = 0.005660 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.841214 B = 4945.878522 C = 5652.796117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.086 3.914 3 H 0.048 0.952 4 C -0.101 4.101 5 C 0.087 3.913 6 H 0.028 0.972 7 N -0.843 5.843 8 C -0.108 4.108 9 C 0.053 3.947 10 N -0.528 5.528 11 C 0.055 3.945 12 C 0.067 3.933 13 O -0.391 6.391 14 C 0.194 3.806 15 C -0.512 4.512 16 H 0.065 0.935 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.906 3.094 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.340 0.660 29 H 0.334 0.666 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.116 0.884 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.044 0.956 38 H 0.003 0.997 39 H 0.005 0.995 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.359 6.822 -16.106 18.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 H 0.066 0.934 4 C -0.139 4.139 5 C -0.024 4.024 6 H 0.046 0.954 7 N -0.373 5.373 8 C -0.147 4.147 9 C -0.074 4.074 10 N -0.253 5.253 11 C -0.072 4.072 12 C -0.010 4.010 13 O -0.311 6.311 14 C 0.120 3.880 15 C -0.550 4.550 16 H 0.083 0.917 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.733 3.267 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.152 0.848 29 H 0.146 0.854 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.133 0.867 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.020 0.980 39 H 0.023 0.977 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.745 6.381 -15.383 17.617 hybrid contribution 1.391 0.267 -0.459 1.489 sum -4.354 6.648 -15.842 17.723 Atomic orbital electron populations 1.21979 0.95511 1.02329 1.00969 1.21448 0.93884 0.96321 0.90638 0.93410 1.21618 0.94216 1.01218 0.96883 1.21426 0.95224 0.88642 0.97110 0.95368 1.58706 1.13724 1.15833 1.49076 1.21618 0.99613 0.99617 0.93819 1.22345 0.85830 0.99541 0.99661 1.61990 1.08520 1.53981 1.00819 1.22216 0.99188 0.96141 0.89685 1.22275 0.85939 0.98103 0.94732 1.87784 1.21270 1.67328 1.54729 1.20170 0.96651 0.87575 0.83602 1.21059 0.91521 1.25710 1.16720 0.91667 1.24937 0.98626 0.95254 0.95667 1.69966 1.34709 1.27892 1.21235 0.86376 0.84499 0.77267 0.78567 1.20538 1.21138 1.19663 0.92645 0.92838 0.91887 0.90988 0.92497 0.84786 0.85356 0.91088 0.92087 0.94590 0.86679 0.94467 0.90163 0.94495 0.93728 0.97959 0.97724 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.61 37.16 0.32 -1.36 16 2 C 0.09 1.13 2.30 -67.72 -0.16 0.97 16 3 H 0.05 0.68 7.69 -51.93 -0.40 0.28 16 4 C -0.10 -1.18 5.01 -26.65 -0.13 -1.31 16 5 C 0.09 1.03 3.59 -67.59 -0.24 0.79 16 6 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 7 N -0.84 -9.06 7.94 -4.57 -0.04 -9.09 16 8 C -0.11 -1.59 5.77 -26.65 -0.15 -1.75 16 9 C 0.05 0.93 5.04 -3.83 -0.02 0.91 16 10 N -0.53 -8.45 4.44 -226.67 -1.01 -9.46 16 11 C 0.06 0.90 5.34 -3.82 -0.02 0.88 16 12 C 0.07 1.31 6.23 37.16 0.23 1.54 16 13 O -0.39 -9.40 7.33 -35.23 -0.26 -9.66 16 14 C 0.19 5.38 5.69 36.01 0.20 5.58 16 15 C -0.51 -15.10 9.43 -34.44 -0.32 -15.42 16 16 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 19 Si 0.91 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H 0.05 0.60 6.36 -51.93 -0.33 0.27 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.34 3.34 9.04 -39.29 -0.36 2.99 16 29 H 0.33 2.94 8.99 -39.29 -0.35 2.59 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.65 7.69 -51.93 -0.40 0.25 16 33 H 0.12 2.46 5.12 -51.93 -0.27 2.20 16 34 H 0.04 0.64 8.03 -51.93 -0.42 0.22 16 35 H 0.08 1.10 5.47 -51.93 -0.28 0.82 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 39 H 0.00 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 310.39 15.07 4.68 4.68 Total: -1.00 -30.77 310.39 -8.30 -39.07 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.00 Total: 1.54 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -0.39 Total: -7.63 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.31 Total: -44.97 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.26 Total: -9.66 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.77 -8.30 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385241764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.657 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds