Wall clock time and date at job start Mon Mar 30 2020 04:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46370 * 2 1 4 4 C 1.53035 * 109.45422 * 240.02527 * 2 1 3 5 5 C 1.53113 * 109.28158 * 180.81165 * 4 2 1 6 6 H 1.08994 * 109.52540 * 177.55923 * 5 4 2 7 7 N 1.46900 * 109.52213 * 297.68906 * 5 4 2 8 8 C 1.53121 * 109.15845 * 57.65308 * 5 4 2 9 9 C 1.53043 * 109.28141 * 302.34738 * 8 5 4 10 10 N 1.46847 * 109.51881 * 59.17982 * 9 8 5 11 11 C 1.46905 * 110.99612 * 174.16356 * 10 9 8 12 12 C 1.53001 * 109.46879 * 286.66996 * 11 10 9 13 13 O 1.42895 * 109.46938 * 67.63776 * 12 11 10 14 14 C 1.42903 * 113.99318 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46697 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99932 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99807 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00029 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99991 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47249 * 89.99646 * 19 17 15 21 21 H 1.48498 * 109.47281 * 210.00190 * 19 17 15 22 22 H 1.48508 * 109.47188 * 330.00303 * 19 17 15 23 23 H 1.08999 * 109.47051 * 306.61335 * 1 2 3 24 24 H 1.09002 * 109.46572 * 66.60759 * 1 2 3 25 25 H 1.08994 * 109.47399 * 186.61423 * 1 2 3 26 26 H 1.09003 * 109.50552 * 300.75632 * 4 2 1 27 27 H 1.09005 * 109.50075 * 60.83055 * 4 2 1 28 28 H 1.00906 * 110.99991 * 179.97438 * 7 5 4 29 29 H 1.00896 * 110.99783 * 303.94972 * 7 5 4 30 30 H 1.08999 * 109.50649 * 62.28739 * 8 5 4 31 31 H 1.08996 * 109.50375 * 182.40584 * 8 5 4 32 32 H 1.09004 * 109.46024 * 299.16586 * 9 8 5 33 33 H 1.08996 * 109.46228 * 179.19649 * 9 8 5 34 34 H 1.08999 * 109.47489 * 46.67042 * 11 10 9 35 35 H 1.09004 * 109.46602 * 166.66875 * 11 10 9 36 36 H 1.09000 * 109.46740 * 187.63906 * 12 11 10 37 37 H 1.08999 * 109.47176 * 307.63295 * 12 11 10 38 38 H 1.08999 * 109.47460 * 299.99268 * 14 13 12 39 39 H 1.08993 * 109.47501 * 60.00189 * 14 13 12 40 40 H 0.97007 * 120.00224 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5708 -0.7364 -1.2358 6 1 3.9375 -1.2867 -2.1022 7 7 4.0760 0.6423 -1.2799 8 6 4.0545 -1.4192 0.0465 9 6 3.4865 -0.6780 1.2590 10 7 2.0193 -0.6919 1.1994 11 6 1.4375 -0.1106 2.4166 12 6 1.6033 -1.0910 3.5795 13 8 2.9889 -1.2110 3.9074 14 6 3.2549 -2.1088 4.9869 15 6 4.7387 -2.1572 5.2459 16 1 5.4113 -1.5622 4.6459 17 6 5.2376 -2.9610 6.2489 18 7 4.4185 -3.6851 6.9798 19 14 7.0769 -3.0216 6.5695 20 1 7.4407 -1.9799 7.5635 21 1 7.4434 -4.3600 7.0982 22 1 7.8088 -2.7727 5.3015 23 1 -0.3633 0.6129 0.8249 24 1 -0.3632 0.4080 -0.9432 25 1 -0.3634 -1.0207 0.1184 26 1 1.6655 -1.7447 -1.2577 27 1 1.6887 -0.1985 -2.1399 28 1 5.0849 0.6581 -1.2710 29 1 3.7134 1.1347 -2.0824 30 1 3.7121 -2.4540 0.0593 31 1 5.1436 -1.3954 0.0829 32 1 3.8405 0.3529 1.2530 33 1 3.8175 -1.1703 2.1734 34 1 1.9476 0.8232 2.6531 35 1 0.3775 0.0854 2.2548 36 1 1.0552 -0.7222 4.4465 37 1 1.2123 -2.0666 3.2907 38 1 2.7412 -1.7615 5.8833 39 1 2.8984 -3.1054 4.7269 40 1 4.7695 -4.2510 7.6853 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385241764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:56 Heat of formation + Delta-G solvation = -74.392759 kcal Electronic energy + Delta-G solvation = -18437.465089 eV Core-core repulsion = 15671.706440 eV Total energy + Delta-G solvation = -2765.758649 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.49669 -38.47553 -36.02359 -34.86411 -33.23440 -31.70486 -29.75118 -28.46845 -27.79731 -24.81221 -24.15147 -22.90436 -21.68422 -20.00610 -18.60885 -17.54268 -17.15791 -16.69677 -16.51394 -16.08232 -15.97849 -15.71784 -15.50795 -14.63822 -14.43564 -14.22237 -13.60362 -13.26613 -13.14583 -12.95290 -12.84566 -12.73445 -12.60080 -12.53745 -12.38927 -12.11289 -11.94374 -11.73033 -11.37451 -11.11663 -11.07229 -10.77469 -10.10428 -9.57502 -8.99268 -8.30773 -6.42770 1.39385 1.42344 1.54248 2.35062 3.02963 3.03218 3.25095 3.66802 3.87812 3.97375 4.11973 4.18960 4.38654 4.44149 4.48948 4.57758 4.62567 4.66227 4.78635 4.81406 4.88272 4.93005 5.01434 5.05423 5.06681 5.14909 5.20933 5.28124 5.32578 5.50932 5.55923 5.57019 5.98778 6.27250 6.32170 6.44779 6.56851 6.68246 6.85486 7.29149 8.81703 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029317 B = 0.005660 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.841214 B = 4945.878522 C = 5652.796117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.085 3.915 3 H 0.040 0.960 4 C -0.099 4.099 5 C 0.094 3.906 6 H 0.045 0.955 7 N -0.850 5.850 8 C -0.107 4.107 9 C 0.061 3.939 10 N -0.536 5.536 11 C 0.064 3.936 12 C 0.059 3.941 13 O -0.397 6.397 14 C 0.209 3.791 15 C -0.543 4.543 16 H 0.060 0.940 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.981 3.019 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.264 1.264 23 H 0.057 0.943 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.345 0.655 29 H 0.349 0.651 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.113 0.887 36 H 0.046 0.954 37 H 0.040 0.960 38 H -0.018 1.018 39 H -0.018 1.018 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.167 7.542 -17.729 19.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 H 0.058 0.942 4 C -0.137 4.137 5 C -0.017 4.017 6 H 0.063 0.937 7 N -0.383 5.383 8 C -0.146 4.146 9 C -0.066 4.066 10 N -0.262 5.262 11 C -0.064 4.064 12 C -0.018 4.018 13 O -0.317 6.317 14 C 0.134 3.866 15 C -0.581 4.581 16 H 0.079 0.921 17 C -0.192 4.192 18 N -0.571 5.571 19 Si 0.804 3.196 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.189 1.189 23 H 0.076 0.924 24 H 0.096 0.904 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.158 0.842 29 H 0.162 0.838 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.131 0.869 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.000 1.000 39 H -0.001 1.001 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.576 7.119 -17.032 19.283 hybrid contribution 1.248 0.062 0.024 1.249 sum -4.328 7.181 -17.008 18.962 Atomic orbital electron populations 1.21951 0.93646 1.02311 1.02446 1.21565 0.95340 0.95680 0.89727 0.94161 1.21637 0.93843 1.01172 0.97063 1.21304 0.95538 0.89196 0.95709 0.93713 1.58635 1.14287 1.15261 1.50090 1.21581 0.99531 0.99018 0.94444 1.22083 0.87081 0.98542 0.98936 1.61992 1.07537 1.54781 1.01858 1.22185 1.01035 0.94387 0.88773 1.22583 0.83664 0.99032 0.96521 1.87824 1.24298 1.66244 1.53318 1.19776 0.95972 0.86982 0.83827 1.21357 0.92325 1.26721 1.17671 0.92137 1.25946 1.04218 0.94196 0.94839 1.70077 1.37236 1.28183 1.21577 0.85211 0.77627 0.77933 0.78805 1.19322 1.19928 1.18870 0.92410 0.90448 0.92322 0.91374 0.89798 0.84237 0.83768 0.92145 0.92135 0.95671 0.91172 0.95437 0.86921 0.93628 0.94122 0.99987 1.00054 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.61 71.98 0.62 -2.22 16 2 C 0.08 2.06 2.30 44.94 0.10 2.16 16 3 H 0.04 1.07 7.69 -2.39 -0.02 1.05 16 4 C -0.10 -2.05 5.01 30.64 0.15 -1.89 16 5 C 0.09 2.05 3.59 44.99 0.16 2.21 16 6 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 7 N -0.85 -16.57 7.94 -168.36 -1.34 -17.91 16 8 C -0.11 -3.15 5.77 30.65 0.18 -2.97 16 9 C 0.06 2.18 5.04 86.33 0.43 2.62 16 10 N -0.54 -16.98 4.44 -871.06 -3.86 -20.84 16 11 C 0.06 2.07 5.34 86.30 0.46 2.53 16 12 C 0.06 2.36 6.23 71.98 0.45 2.80 16 13 O -0.40 -19.96 7.33 -148.98 -1.09 -21.05 16 14 C 0.21 12.15 5.69 71.24 0.41 12.56 16 15 C -0.54 -33.01 9.43 25.60 0.24 -32.76 16 16 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 17 C 0.01 0.37 5.46 84.66 0.46 0.83 16 18 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 19 Si 0.98 45.14 29.54 68.60 2.03 47.17 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 23 H 0.06 1.09 6.36 -2.39 -0.02 1.07 16 24 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.34 6.21 9.04 -89.69 -0.81 5.40 16 29 H 0.35 5.16 8.99 -89.70 -0.81 4.35 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.03 0.93 7.69 -2.39 -0.02 0.91 16 33 H 0.07 3.16 5.12 -2.39 -0.01 3.15 16 34 H 0.03 0.94 8.03 -2.39 -0.02 0.92 16 35 H 0.11 2.90 5.47 -2.38 -0.01 2.89 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 39 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 40 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -67.65 310.39 -0.91 -68.56 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -0.60 Total: 15.00 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 3.67 Total: -14.14 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -4.92 Total: -95.55 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -1.09 Total: -21.05 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -67.65 -0.91 -68.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385241764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.828 kcal (2) G-P(sol) polarization free energy of solvation -67.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds