Wall clock time and date at job start Mon Mar 30 2020 04:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46378 * 2 1 4 4 C 1.53039 * 109.45774 * 119.96520 * 2 1 3 5 5 C 1.53116 * 109.27613 * 179.19822 * 4 2 1 6 6 H 1.09001 * 109.52306 * 182.43850 * 5 4 2 7 7 N 1.46902 * 109.52741 * 62.24820 * 5 4 2 8 8 C 1.53120 * 109.16135 * 302.34189 * 5 4 2 9 9 C 1.53040 * 109.27492 * 57.65620 * 8 5 4 10 10 N 1.46846 * 109.46389 * 240.01745 * 2 1 3 11 11 C 1.46898 * 111.00025 * 54.14631 * 10 2 1 12 12 C 1.53000 * 109.46979 * 176.08561 * 11 10 2 13 13 O 1.42900 * 109.46806 * 62.29991 * 12 11 10 14 14 C 1.42904 * 113.99790 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46951 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00140 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99588 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00384 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99868 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46856 * 0.02562 * 19 17 15 21 21 H 1.48490 * 109.47190 * 120.00076 * 19 17 15 22 22 H 1.48504 * 109.47113 * 240.00413 * 19 17 15 23 23 H 1.08992 * 109.47098 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46436 * 59.98495 * 1 2 3 25 25 H 1.08996 * 109.47653 * 299.98505 * 1 2 3 26 26 H 1.09007 * 109.50344 * 299.13708 * 4 2 1 27 27 H 1.08994 * 109.50584 * 59.25507 * 4 2 1 28 28 H 1.00896 * 111.00644 * 180.31375 * 7 5 4 29 29 H 1.00900 * 111.00118 * 304.27429 * 7 5 4 30 30 H 1.08998 * 109.50449 * 297.71791 * 8 5 4 31 31 H 1.09000 * 109.50298 * 177.59583 * 8 5 4 32 32 H 1.09000 * 109.46329 * 180.80227 * 9 8 5 33 33 H 1.08999 * 109.46315 * 60.83884 * 9 8 5 34 34 H 1.08995 * 109.47296 * 296.09101 * 11 10 2 35 35 H 1.08999 * 109.46793 * 56.08896 * 11 10 2 36 36 H 1.08998 * 109.46916 * 182.29495 * 12 11 10 37 37 H 1.09000 * 109.47539 * 302.29889 * 12 11 10 38 38 H 1.09003 * 109.47031 * 299.99751 * 14 13 12 39 39 H 1.08998 * 109.47387 * 59.99479 * 14 13 12 40 40 H 0.96996 * 120.00014 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5709 -0.7359 1.2358 6 1 3.9378 -1.2860 2.1024 7 7 4.0759 0.6429 1.2782 8 6 4.0548 -1.4188 -0.0463 9 6 3.4865 -0.6779 -1.2588 10 7 2.0194 -0.6919 -1.1993 11 6 1.4374 -0.1109 -2.4165 12 6 2.0432 -0.7908 -3.6460 13 8 1.7145 -2.1814 -3.6316 14 6 2.2357 -2.9133 -4.7429 15 6 1.8299 -4.3600 -4.6263 16 1 1.2341 -4.6878 -3.7873 17 6 2.2194 -5.2650 -5.5907 18 7 2.9455 -4.8660 -6.6121 19 14 1.7172 -7.0585 -5.4459 20 1 0.9095 -7.2483 -4.2142 21 1 0.9097 -7.4436 -6.6310 22 1 2.9326 -7.9089 -5.3773 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5141 -0.8899 25 1 -0.3634 0.5136 0.8901 26 1 1.6893 -0.1978 2.1400 27 1 1.6658 -1.7445 1.2579 28 1 5.0847 0.6592 1.2646 29 1 3.6952 1.1910 0.5214 30 1 3.7125 -2.4536 -0.0589 31 1 5.1439 -1.3947 -0.0827 32 1 3.8176 -1.1701 -2.1732 33 1 3.8404 0.3531 -1.2531 34 1 0.3582 -0.2633 -2.4118 35 1 1.6534 0.9570 -2.4485 36 1 1.6418 -0.3320 -4.5496 37 1 3.1267 -0.6733 -3.6294 38 1 1.8387 -2.4986 -5.6695 39 1 3.3231 -2.8398 -4.7485 40 1 3.2198 -5.5028 -7.2904 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385241767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:03 Heat of formation + Delta-G solvation = -73.070695 kcal Electronic energy + Delta-G solvation = -18396.048474 eV Core-core repulsion = 15630.347154 eV Total energy + Delta-G solvation = -2765.701320 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82337 -38.52164 -36.07727 -34.88101 -33.50771 -31.39212 -29.77601 -28.48892 -27.87280 -25.21129 -24.48226 -22.66345 -21.91288 -19.94409 -18.62803 -17.59386 -17.43137 -16.88068 -16.48494 -16.14989 -15.86997 -15.74810 -15.31581 -14.95267 -14.60436 -14.07540 -13.80715 -13.55508 -13.15651 -12.95985 -12.88402 -12.83484 -12.70850 -12.52795 -12.40007 -12.20348 -12.01655 -11.85405 -11.37681 -11.21912 -11.08066 -10.85118 -10.19098 -9.64246 -9.07323 -8.32967 -6.44736 1.38805 1.40167 1.55230 2.34270 2.86720 3.00814 3.23004 3.66690 3.76806 3.85659 4.02773 4.06368 4.22867 4.25111 4.33800 4.41692 4.46473 4.51620 4.62449 4.77348 4.81424 4.86558 4.89126 4.91357 5.00814 5.09619 5.17429 5.17739 5.22590 5.29447 5.43114 5.55079 5.96465 6.16536 6.21900 6.31038 6.55359 6.56236 6.85091 7.27665 8.79703 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029686 B = 0.005210 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.974110 B = 5372.864614 C = 5530.690705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.082 3.918 3 H 0.048 0.952 4 C -0.101 4.101 5 C 0.095 3.905 6 H 0.087 0.913 7 N -0.841 5.841 8 C -0.147 4.147 9 C 0.056 3.944 10 N -0.541 5.541 11 C 0.068 3.932 12 C 0.051 3.949 13 O -0.391 6.391 14 C 0.210 3.790 15 C -0.543 4.543 16 H 0.059 0.941 17 C 0.007 3.993 18 N -0.932 5.932 19 Si 0.982 3.018 20 H -0.265 1.265 21 H -0.270 1.270 22 H -0.271 1.271 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.346 0.654 29 H 0.337 0.663 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.039 0.961 38 H -0.017 1.017 39 H -0.019 1.019 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.177 11.794 14.345 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 H 0.066 0.934 4 C -0.139 4.139 5 C -0.016 4.016 6 H 0.105 0.895 7 N -0.372 5.372 8 C -0.187 4.187 9 C -0.072 4.072 10 N -0.267 5.267 11 C -0.059 4.059 12 C -0.026 4.026 13 O -0.311 6.311 14 C 0.135 3.865 15 C -0.581 4.581 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.571 5.571 19 Si 0.805 3.195 20 H -0.190 1.190 21 H -0.195 1.195 22 H -0.196 1.196 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.081 0.919 28 H 0.160 0.840 29 H 0.151 0.849 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.000 1.000 39 H -0.002 1.002 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.370 11.226 15.086 18.808 hybrid contribution 0.879 -0.218 -1.844 2.054 sum 0.508 11.008 13.242 17.227 Atomic orbital electron populations 1.21885 0.93808 1.02107 1.02459 1.21675 0.96004 0.95248 0.89626 0.93381 1.21635 0.94326 1.00985 0.96956 1.21411 0.95192 0.89230 0.95816 0.89490 1.59053 1.13601 1.11391 1.53157 1.22345 1.00183 1.00483 0.95692 1.22045 0.87760 0.98481 0.98934 1.61794 1.06870 1.56079 1.01975 1.22102 1.00368 0.95672 0.87794 1.22695 0.98433 0.83539 0.97913 1.87930 1.76465 1.19434 1.47262 1.19779 0.91593 0.91269 0.83891 1.21385 1.34264 0.93335 1.09101 0.92305 1.25944 0.94516 1.04573 0.94107 1.70074 1.37505 1.37112 1.12434 0.85154 0.78423 0.77337 0.78603 1.18957 1.19529 1.19606 0.93200 0.92380 0.90371 0.89718 0.91945 0.84031 0.84876 0.92607 0.90772 0.92773 0.94235 0.89860 0.91662 0.93654 0.94255 0.99951 1.00155 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.76 71.98 0.63 -2.48 16 2 C 0.08 1.88 2.20 44.94 0.10 1.98 16 3 H 0.05 1.00 6.63 -2.39 -0.02 0.99 16 4 C -0.10 -2.18 5.07 30.65 0.16 -2.02 16 5 C 0.10 1.96 3.72 44.99 0.17 2.12 16 6 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 7 N -0.84 -14.79 9.17 -168.34 -1.54 -16.34 16 8 C -0.15 -3.68 5.76 30.65 0.18 -3.51 16 9 C 0.06 1.57 4.80 86.33 0.41 1.98 16 10 N -0.54 -15.96 4.51 -871.12 -3.92 -19.88 16 11 C 0.07 2.03 4.84 86.30 0.42 2.44 16 12 C 0.05 1.95 5.56 71.98 0.40 2.35 16 13 O -0.39 -19.75 10.23 -148.98 -1.52 -21.27 16 14 C 0.21 12.14 5.69 71.24 0.41 12.54 16 15 C -0.54 -33.25 9.43 25.60 0.24 -33.01 16 16 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 17 C 0.01 0.40 5.46 84.65 0.46 0.86 16 18 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 19 Si 0.98 45.26 29.54 68.60 2.03 47.28 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.22 6.41 -2.39 -0.02 1.20 16 25 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 28 H 0.35 5.17 9.04 -89.70 -0.81 4.36 16 29 H 0.34 5.97 5.60 -89.69 -0.50 5.47 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 1.88 5.79 -2.39 -0.01 1.87 16 33 H 0.04 0.94 6.84 -2.39 -0.02 0.92 16 34 H 0.08 2.51 6.45 -2.39 -0.02 2.50 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.04 1.47 6.05 -2.39 -0.01 1.46 16 38 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 39 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 40 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -67.43 307.86 -1.40 -68.83 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -0.29 Total: 14.68 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 3.57 Total: -16.72 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -5.18 Total: -92.80 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -1.52 Total: -21.27 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -67.43 -1.40 -68.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385241767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.237 kcal (2) G-P(sol) polarization free energy of solvation -67.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds