Wall clock time and date at job start Mon Mar 30 2020 04:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.49337 * 2 1 4 4 C 1.53052 * 109.49384 * 239.95073 * 2 1 3 5 5 N 1.46958 * 109.36020 * 298.41233 * 4 2 1 6 6 C 1.46904 * 110.99398 * 176.81036 * 5 4 2 7 7 C 1.53003 * 109.47239 * 286.84277 * 6 5 4 8 8 O 1.42901 * 109.46569 * 67.36275 * 7 6 5 9 9 C 1.42908 * 113.99621 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.46827 * 179.97438 * 9 8 7 11 11 H 1.08005 * 120.00520 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99882 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99888 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00205 * 180.02562 * 12 10 9 15 15 H 1.48509 * 109.46831 * 90.00285 * 14 12 10 16 16 H 1.48499 * 109.47362 * 210.00030 * 14 12 10 17 17 H 1.48498 * 109.47015 * 330.00862 * 14 12 10 18 18 C 1.46947 * 110.88420 * 300.67691 * 5 4 2 19 19 H 1.09003 * 109.49226 * 299.35709 * 18 5 4 20 20 C 1.53003 * 109.49212 * 179.29193 * 18 5 4 21 21 C 1.53049 * 109.36432 * 59.32120 * 18 5 4 22 22 N 1.46954 * 109.38450 * 301.58764 * 21 18 5 23 23 H 1.09004 * 109.46923 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47594 * 300.05003 * 1 2 3 25 25 H 1.09003 * 109.46516 * 60.04875 * 1 2 3 26 26 H 1.09005 * 109.48791 * 178.44840 * 4 2 1 27 27 H 1.08994 * 109.50460 * 58.38938 * 4 2 1 28 28 H 1.09000 * 109.47295 * 46.84544 * 6 5 4 29 29 H 1.09007 * 109.46664 * 166.84814 * 6 5 4 30 30 H 1.08994 * 109.46854 * 187.36272 * 7 6 5 31 31 H 1.09000 * 109.46976 * 307.36796 * 7 6 5 32 32 H 1.08997 * 109.47094 * 300.00511 * 9 8 7 33 33 H 1.09002 * 109.46526 * 60.00481 * 9 8 7 34 34 H 0.97006 * 119.99938 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.46987 * 300.10883 * 20 18 5 36 36 H 1.08994 * 109.46844 * 60.10786 * 20 18 5 37 37 H 1.09000 * 109.47294 * 180.11117 * 20 18 5 38 38 H 1.09004 * 109.48695 * 61.56964 * 21 18 5 39 39 H 1.09004 * 109.48837 * 181.61090 * 21 18 5 40 40 H 1.00906 * 111.00096 * 183.19549 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0407 -0.7225 -1.2489 5 7 1.5814 -2.1182 -1.2263 6 6 1.9884 -2.8261 -2.4476 7 6 1.1355 -2.3459 -3.6236 8 8 1.4480 -0.9818 -3.9129 9 6 0.7027 -0.4332 -5.0018 10 6 1.1102 1.0015 -5.2170 11 1 1.8634 1.4496 -4.5857 12 6 0.5216 1.7424 -6.2199 13 7 -0.3958 1.1970 -6.9883 14 14 1.0273 3.5206 -6.4872 15 1 2.1564 3.5747 -7.4503 16 1 -0.1235 4.2863 -7.0302 17 1 1.4511 4.1145 -5.1938 18 6 2.0720 -2.8118 -0.0273 19 1 3.1621 -2.8115 -0.0274 20 6 1.5617 -4.2542 -0.0272 21 6 1.5614 -2.0894 1.2215 22 7 2.0207 -0.6936 1.1996 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5146 0.8895 25 1 -0.3632 0.5131 -0.8905 26 1 3.1304 -0.6984 -1.2628 27 1 1.6545 -0.2269 -2.1395 28 1 3.0390 -2.6213 -2.6532 29 1 1.8472 -3.8982 -2.3102 30 1 1.3452 -2.9603 -4.4991 31 1 0.0799 -2.4299 -3.3650 32 1 0.9037 -1.0080 -5.9058 33 1 -0.3620 -0.4776 -4.7722 34 1 -0.8102 1.7183 -7.6937 35 1 0.4717 -4.2539 -0.0280 36 1 1.9255 -4.7684 -0.9167 37 1 1.9241 -4.7679 0.8633 38 1 0.4717 -2.1135 1.2356 39 1 1.9476 -2.5854 2.1120 40 1 1.7412 -0.2077 2.0387 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385247619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:23 Heat of formation + Delta-G solvation = -42.060493 kcal Electronic energy + Delta-G solvation = -18624.375601 eV Core-core repulsion = 15860.018985 eV Total energy + Delta-G solvation = -2764.356616 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.50669 -36.76928 -34.83292 -32.85129 -32.35992 -29.56889 -28.43281 -26.91553 -25.55144 -24.47593 -22.27524 -21.74567 -20.83136 -18.62142 -16.68049 -16.41074 -15.76369 -15.23156 -14.97472 -14.83574 -14.42449 -14.13341 -13.79553 -13.37531 -13.03435 -12.75223 -12.35262 -11.98167 -11.81816 -11.70438 -11.59591 -11.23409 -11.14536 -10.98277 -10.85311 -10.68961 -10.65691 -10.37908 -10.09350 -9.82418 -9.06791 -8.76590 -8.39028 -8.12868 -7.91000 -6.09922 -4.11553 3.30544 3.35805 3.40733 4.12685 4.29968 4.35876 4.84318 5.00885 5.13831 5.17488 5.26752 5.36241 5.44248 5.48862 5.64264 5.66710 5.70491 5.75134 5.86140 5.93509 6.05204 6.09918 6.16734 6.20214 6.28030 6.34375 6.45066 6.58405 6.80749 7.12200 7.15449 7.33179 7.46324 7.49318 7.54517 7.79992 8.17344 8.59923 9.02067 9.53401 11.01552 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030243 B = 0.005937 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.598016 B = 4714.693634 C = 5319.318505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.083 3.917 3 H 0.082 0.918 4 C 0.054 3.946 5 N -0.526 5.526 6 C 0.054 3.946 7 C 0.068 3.932 8 O -0.392 6.392 9 C 0.195 3.805 10 C -0.513 4.513 11 H 0.065 0.935 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.905 3.095 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.271 1.271 18 C 0.078 3.922 19 H 0.042 0.958 20 C -0.147 4.147 21 C 0.064 3.936 22 N -0.689 5.689 23 H 0.067 0.933 24 H 0.039 0.961 25 H 0.066 0.934 26 H 0.031 0.969 27 H 0.125 0.875 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.003 0.997 33 H 0.005 0.995 34 H 0.263 0.737 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.703 -7.904 14.614 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.027 4.027 3 H 0.100 0.900 4 C -0.074 4.074 5 N -0.251 5.251 6 C -0.074 4.074 7 C -0.010 4.010 8 O -0.312 6.312 9 C 0.121 3.879 10 C -0.551 4.551 11 H 0.084 0.916 12 C -0.144 4.144 13 N -0.538 5.538 14 Si 0.733 3.267 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.031 4.031 19 H 0.060 0.940 20 C -0.205 4.205 21 C -0.066 4.066 22 N -0.319 5.319 23 H 0.086 0.914 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.049 0.951 27 H 0.142 0.858 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.021 0.979 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.826 -7.901 14.302 16.582 hybrid contribution -0.116 0.862 -0.241 0.902 sum 2.710 -7.040 14.062 15.957 Atomic orbital electron populations 1.22343 0.96879 1.02703 1.01414 1.21694 0.93505 0.97453 0.90002 0.89974 1.22578 0.97568 0.88163 0.99070 1.62170 1.59500 1.02568 1.00871 1.22266 0.97833 0.97794 0.89501 1.22262 0.98064 0.85912 0.94778 1.87780 1.65905 1.23317 1.54227 1.20173 0.90716 0.93636 0.83385 1.21047 1.22597 0.95477 1.15998 0.91647 1.24938 0.94950 0.99010 0.95546 1.69966 1.26695 1.37094 1.19999 0.86375 0.78023 0.83769 0.78553 1.20517 1.21122 1.19619 1.21639 0.97290 0.93386 0.90737 0.93981 1.21910 1.02089 0.95051 1.01485 1.21984 0.98311 0.89286 0.97025 1.60780 1.63295 1.02792 1.05040 0.91447 0.94194 0.91462 0.95102 0.85760 0.94327 0.89945 0.94340 0.93694 0.97934 0.97730 0.92703 0.91854 0.92147 0.92493 0.93999 0.91216 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 8.83 37.16 0.33 -2.19 16 2 C 0.08 1.22 3.70 -67.63 -0.25 0.97 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.05 0.92 4.70 -3.77 -0.02 0.90 16 5 N -0.53 -8.14 3.79 -226.49 -0.86 -9.00 16 6 C 0.05 0.84 5.36 -3.82 -0.02 0.82 16 7 C 0.07 1.27 6.23 37.16 0.23 1.50 16 8 O -0.39 -9.17 7.34 -35.23 -0.26 -9.43 16 9 C 0.20 5.30 5.69 36.00 0.20 5.50 16 10 C -0.51 -14.90 9.43 -34.44 -0.32 -15.22 16 11 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 14 Si 0.91 21.79 29.54 -169.99 -5.02 16.77 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 C 0.08 1.01 2.56 -67.66 -0.17 0.84 16 19 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 20 C -0.15 -1.55 8.93 37.16 0.33 -1.21 16 21 C 0.06 0.76 5.62 -3.77 -0.02 0.73 16 22 N -0.69 -8.76 6.70 -106.55 -0.71 -9.47 16 23 H 0.07 1.01 5.94 -51.93 -0.31 0.70 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.12 2.57 5.24 -51.93 -0.27 2.30 16 28 H 0.04 0.63 8.04 -51.93 -0.42 0.22 16 29 H 0.08 1.07 5.46 -51.93 -0.28 0.79 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 33 H 0.00 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.62 6.03 -51.93 -0.31 0.30 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.04 0.51 6.35 -51.93 -0.33 0.18 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.34 3.60 8.89 -39.29 -0.35 3.25 16 LS Contribution 308.26 15.07 4.65 4.65 Total: -1.00 -30.07 308.26 -8.17 -38.24 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.89 Total: 0.21 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 0.19 Total: -5.83 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.84 Total: -44.60 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.26 Total: -9.43 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.07 -8.17 -38.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385247619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.821 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds