Wall clock time and date at job start Mon Mar 30 2020 04:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.49337 * 2 1 4 4 C 1.53052 * 109.49384 * 239.95073 * 2 1 3 5 5 N 1.46958 * 109.36020 * 298.41233 * 4 2 1 6 6 C 1.46904 * 110.99398 * 176.81036 * 5 4 2 7 7 C 1.53003 * 109.47239 * 286.84277 * 6 5 4 8 8 O 1.42901 * 109.46569 * 67.36275 * 7 6 5 9 9 C 1.42908 * 113.99621 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.46827 * 179.97438 * 9 8 7 11 11 H 1.08005 * 120.00520 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99882 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99888 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00205 * 180.02562 * 12 10 9 15 15 H 1.48509 * 109.46831 * 90.00285 * 14 12 10 16 16 H 1.48499 * 109.47362 * 210.00030 * 14 12 10 17 17 H 1.48498 * 109.47015 * 330.00862 * 14 12 10 18 18 C 1.46947 * 110.88420 * 300.67691 * 5 4 2 19 19 H 1.09003 * 109.49226 * 299.35709 * 18 5 4 20 20 C 1.53003 * 109.49212 * 179.29193 * 18 5 4 21 21 C 1.53049 * 109.36432 * 59.32120 * 18 5 4 22 22 N 1.46954 * 109.38450 * 301.58764 * 21 18 5 23 23 H 1.09004 * 109.46923 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47594 * 300.05003 * 1 2 3 25 25 H 1.09003 * 109.46516 * 60.04875 * 1 2 3 26 26 H 1.09005 * 109.48791 * 178.44840 * 4 2 1 27 27 H 1.08994 * 109.50460 * 58.38938 * 4 2 1 28 28 H 1.09000 * 109.47295 * 46.84544 * 6 5 4 29 29 H 1.09007 * 109.46664 * 166.84814 * 6 5 4 30 30 H 1.08994 * 109.46854 * 187.36272 * 7 6 5 31 31 H 1.09000 * 109.46976 * 307.36796 * 7 6 5 32 32 H 1.08997 * 109.47094 * 300.00511 * 9 8 7 33 33 H 1.09002 * 109.46526 * 60.00481 * 9 8 7 34 34 H 0.97006 * 119.99938 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.46987 * 300.10883 * 20 18 5 36 36 H 1.08994 * 109.46844 * 60.10786 * 20 18 5 37 37 H 1.09000 * 109.47294 * 180.11117 * 20 18 5 38 38 H 1.09004 * 109.48695 * 61.56964 * 21 18 5 39 39 H 1.09004 * 109.48837 * 181.61090 * 21 18 5 40 40 H 1.00906 * 111.00096 * 183.19549 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0407 -0.7225 -1.2489 5 7 1.5814 -2.1182 -1.2263 6 6 1.9884 -2.8261 -2.4476 7 6 1.1355 -2.3459 -3.6236 8 8 1.4480 -0.9818 -3.9129 9 6 0.7027 -0.4332 -5.0018 10 6 1.1102 1.0015 -5.2170 11 1 1.8634 1.4496 -4.5857 12 6 0.5216 1.7424 -6.2199 13 7 -0.3958 1.1970 -6.9883 14 14 1.0273 3.5206 -6.4872 15 1 2.1564 3.5747 -7.4503 16 1 -0.1235 4.2863 -7.0302 17 1 1.4511 4.1145 -5.1938 18 6 2.0720 -2.8118 -0.0273 19 1 3.1621 -2.8115 -0.0274 20 6 1.5617 -4.2542 -0.0272 21 6 1.5614 -2.0894 1.2215 22 7 2.0207 -0.6936 1.1996 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5146 0.8895 25 1 -0.3632 0.5131 -0.8905 26 1 3.1304 -0.6984 -1.2628 27 1 1.6545 -0.2269 -2.1395 28 1 3.0390 -2.6213 -2.6532 29 1 1.8472 -3.8982 -2.3102 30 1 1.3452 -2.9603 -4.4991 31 1 0.0799 -2.4299 -3.3650 32 1 0.9037 -1.0080 -5.9058 33 1 -0.3620 -0.4776 -4.7722 34 1 -0.8102 1.7183 -7.6937 35 1 0.4717 -4.2539 -0.0280 36 1 1.9255 -4.7684 -0.9167 37 1 1.9241 -4.7679 0.8633 38 1 0.4717 -2.1135 1.2356 39 1 1.9476 -2.5854 2.1120 40 1 1.7412 -0.2077 2.0387 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385247619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:23 Heat of formation + Delta-G solvation = -63.951683 kcal Electronic energy + Delta-G solvation = -18625.324874 eV Core-core repulsion = 15860.018985 eV Total energy + Delta-G solvation = -2765.305890 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69185 -38.52059 -36.10787 -34.88343 -33.62966 -30.98979 -29.68449 -28.89638 -26.60443 -25.83600 -24.41874 -22.97604 -22.09380 -19.76417 -18.61871 -17.88309 -17.42159 -16.69054 -16.51530 -16.14456 -15.98040 -15.63922 -15.06170 -14.78516 -14.64769 -13.90413 -13.84094 -13.36072 -13.23568 -12.96544 -12.90275 -12.72627 -12.72198 -12.50130 -12.41215 -12.28832 -12.12614 -11.78753 -11.46652 -11.35361 -11.11264 -10.80583 -10.13521 -9.45199 -9.15451 -8.31369 -6.43196 1.39444 1.41932 1.53928 2.34480 2.92243 3.02695 3.19952 3.31805 3.88337 3.97140 4.10772 4.21867 4.29992 4.34550 4.42773 4.46511 4.58511 4.61672 4.72593 4.79246 4.81845 4.89496 4.90453 4.94512 5.00694 5.10649 5.17636 5.20211 5.29451 5.43248 5.45076 5.55516 5.97620 6.00876 6.11249 6.30734 6.54472 6.55595 6.84122 7.28715 8.80997 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030243 B = 0.005937 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.598016 B = 4714.693634 C = 5319.318505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.088 3.912 3 H 0.081 0.919 4 C 0.058 3.942 5 N -0.531 5.531 6 C 0.062 3.938 7 C 0.060 3.940 8 O -0.398 6.398 9 C 0.211 3.789 10 C -0.542 4.542 11 H 0.061 0.939 12 C 0.007 3.993 13 N -0.931 5.931 14 Si 0.980 3.020 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.264 1.264 18 C 0.075 3.925 19 H 0.033 0.967 20 C -0.141 4.141 21 C 0.064 3.936 22 N -0.689 5.689 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.039 0.961 26 H 0.016 0.984 27 H 0.085 0.915 28 H 0.030 0.970 29 H 0.117 0.883 30 H 0.047 0.953 31 H 0.041 0.959 32 H -0.018 1.018 33 H -0.018 1.018 34 H 0.270 0.730 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.096 0.904 40 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.177 -8.065 16.269 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.022 4.022 3 H 0.099 0.901 4 C -0.070 4.070 5 N -0.257 5.257 6 C -0.066 4.066 7 C -0.017 4.017 8 O -0.318 6.318 9 C 0.136 3.864 10 C -0.580 4.580 11 H 0.079 0.921 12 C -0.191 4.191 13 N -0.571 5.571 14 Si 0.803 3.197 15 H -0.194 1.194 16 H -0.200 1.200 17 H -0.188 1.188 18 C -0.033 4.033 19 H 0.051 0.949 20 C -0.199 4.199 21 C -0.065 4.065 22 N -0.321 5.321 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.034 0.966 27 H 0.103 0.897 28 H 0.048 0.952 29 H 0.135 0.865 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.000 1.000 33 H 0.000 1.000 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.114 0.886 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.303 -8.086 15.985 18.215 hybrid contribution -0.268 0.813 -0.711 1.113 sum 3.035 -7.273 15.274 17.187 Atomic orbital electron populations 1.22238 0.96689 1.02256 1.01149 1.21539 0.93469 0.97268 0.89971 0.90112 1.22344 0.96391 0.89432 0.98805 1.62166 1.59646 1.01958 1.01897 1.22246 0.96393 0.99489 0.88445 1.22562 0.98738 0.83766 0.96655 1.87812 1.65276 1.25957 1.52718 1.19763 0.89692 0.93296 0.83653 1.21352 1.23230 0.96622 1.16787 0.92080 1.25927 0.94503 1.03964 0.94739 1.70076 1.27438 1.39148 1.20399 0.85232 0.78114 0.77539 0.78843 1.19381 1.19999 1.18825 1.21799 0.96872 0.94838 0.89801 0.94865 1.21876 1.01910 0.93262 1.02860 1.22069 0.98344 0.88695 0.97431 1.60727 1.63251 1.03351 1.04748 0.91931 0.91858 0.94218 0.96584 0.89746 0.95201 0.86548 0.93488 0.94068 0.99986 1.00041 0.92134 0.92040 0.91877 0.90060 0.94044 0.88556 0.82937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.68 8.83 71.98 0.64 -4.05 16 2 C 0.09 2.54 3.70 44.91 0.17 2.71 16 3 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 4 C 0.06 2.05 4.70 86.31 0.41 2.46 16 5 N -0.53 -16.20 3.79 -870.48 -3.30 -19.50 16 6 C 0.06 1.90 5.36 86.30 0.46 2.37 16 7 C 0.06 2.30 6.23 71.98 0.45 2.75 16 8 O -0.40 -19.43 7.34 -148.98 -1.09 -20.52 16 9 C 0.21 12.00 5.69 71.23 0.41 12.40 16 10 C -0.54 -32.45 9.43 25.60 0.24 -32.21 16 11 H 0.06 3.62 7.81 -2.91 -0.02 3.59 16 12 C 0.01 0.41 5.46 84.66 0.46 0.87 16 13 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 14 Si 0.98 44.76 29.54 68.60 2.03 46.79 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 18 C 0.08 1.79 2.56 44.92 0.12 1.91 16 19 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 20 C -0.14 -2.53 8.93 71.98 0.64 -1.89 16 21 C 0.06 1.35 5.62 86.31 0.49 1.83 16 22 N -0.69 -16.17 6.70 -491.02 -3.29 -19.46 16 23 H 0.06 1.83 5.94 -2.38 -0.01 1.82 16 24 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.08 3.68 5.24 -2.39 -0.01 3.66 16 28 H 0.03 0.98 8.04 -2.39 -0.02 0.96 16 29 H 0.12 2.79 5.46 -2.38 -0.01 2.78 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 33 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 34 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.09 6.03 -2.39 -0.01 1.08 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.04 0.90 6.35 -2.38 -0.02 0.89 16 39 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.35 6.59 8.89 -89.69 -0.80 5.79 16 Total: -1.00 -66.13 308.26 -0.69 -66.83 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.21 Total: 12.99 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 4.47 Total: -10.85 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -6.31 Total: -95.23 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -1.09 Total: -20.52 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -66.13 -0.69 -66.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385247619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.876 kcal (2) G-P(sol) polarization free energy of solvation -66.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds