Wall clock time and date at job start Mon Mar 30 2020 04:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49110 * 2 1 4 4 C 1.53049 * 109.49425 * 120.04535 * 2 1 3 5 5 N 1.46956 * 109.37889 * 61.57347 * 4 2 1 6 6 C 1.46907 * 111.00063 * 183.19787 * 5 4 2 7 7 C 1.53006 * 109.46565 * 66.04698 * 6 5 4 8 8 O 1.42900 * 109.46957 * 65.00214 * 7 6 5 9 9 C 1.42904 * 113.99774 * 179.97438 * 8 7 6 10 10 C 1.50708 * 109.46748 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99795 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99601 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99735 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00077 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47280 * 89.99711 * 14 12 10 16 16 H 1.48500 * 109.46787 * 209.99677 * 14 12 10 17 17 H 1.48497 * 109.47012 * 329.99455 * 14 12 10 18 18 C 1.46998 * 110.85606 * 59.31765 * 5 4 2 19 19 H 1.08997 * 109.50642 * 60.67078 * 18 5 4 20 20 C 1.52999 * 109.48649 * 180.72329 * 18 5 4 21 21 C 1.53062 * 109.37366 * 300.68752 * 18 5 4 22 22 N 1.46954 * 109.35871 * 58.40489 * 21 18 5 23 23 H 1.09000 * 109.46766 * 299.95576 * 1 2 3 24 24 H 1.08990 * 109.47185 * 59.95263 * 1 2 3 25 25 H 1.08994 * 109.46985 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.49200 * 181.55498 * 4 2 1 27 27 H 1.09002 * 109.48985 * 301.59917 * 4 2 1 28 28 H 1.08989 * 109.47352 * 186.04595 * 6 5 4 29 29 H 1.09001 * 109.47106 * 306.05350 * 6 5 4 30 30 H 1.09002 * 109.46758 * 184.99848 * 7 6 5 31 31 H 1.08998 * 109.47522 * 304.99932 * 7 6 5 32 32 H 1.08999 * 109.47478 * 299.99894 * 9 8 7 33 33 H 1.08997 * 109.46971 * 60.00451 * 9 8 7 34 34 H 0.96999 * 120.00354 * 180.02562 * 13 12 10 35 35 H 1.08994 * 109.47660 * 179.89875 * 20 18 5 36 36 H 1.09005 * 109.46714 * 299.90183 * 20 18 5 37 37 H 1.09008 * 109.47318 * 59.89499 * 20 18 5 38 38 H 1.09002 * 109.48764 * 298.44108 * 21 18 5 39 39 H 1.08993 * 109.50447 * 178.38176 * 21 18 5 40 40 H 1.00900 * 110.99879 * 176.81194 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0407 -0.7224 1.2489 5 7 1.5814 -2.1181 1.2270 6 6 1.9884 -2.8255 2.4485 7 6 1.2626 -2.2223 3.6529 8 8 -0.1415 -2.4575 3.5298 9 6 -0.9157 -1.9318 4.6097 10 6 -2.3735 -2.2352 4.3769 11 1 -2.6780 -2.7758 3.4929 12 6 -3.3181 -1.8235 5.2930 13 7 -4.5901 -2.0887 5.0901 14 14 -2.7912 -0.8891 6.8222 15 1 -2.7936 0.5682 6.5372 16 1 -3.7373 -1.1785 7.9296 17 1 -1.4238 -1.3143 7.2154 18 6 2.0721 -2.8118 0.0275 19 1 3.1621 -2.8119 0.0274 20 6 1.5617 -4.2542 0.0274 21 6 1.5614 -2.0894 -1.2215 22 7 2.0207 -0.6937 -1.1990 23 1 -0.3633 0.5132 0.8904 24 1 -0.3633 0.5145 -0.8895 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1304 -0.6983 1.2629 27 1 1.6546 -0.2264 2.1394 28 1 1.7306 -3.8808 2.3602 29 1 3.0650 -2.7246 2.5852 30 1 1.6299 -2.6864 4.5682 31 1 1.4494 -1.1490 3.6895 32 1 -0.5936 -2.3902 5.5447 33 1 -0.7743 -0.8525 4.6664 34 1 -5.2548 -1.7988 5.7343 35 1 1.9241 -4.7679 -0.8629 36 1 1.9255 -4.7684 0.9170 37 1 0.4716 -4.2539 0.0282 38 1 0.4717 -2.1135 -1.2354 39 1 1.9476 -2.5851 -2.1120 40 1 1.7413 -0.2075 -2.0378 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385247621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:30 Heat of formation + Delta-G solvation = -35.648376 kcal Electronic energy + Delta-G solvation = -18572.062443 eV Core-core repulsion = 15807.983877 eV Total energy + Delta-G solvation = -2764.078566 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.63820 -36.88173 -34.92936 -32.89608 -32.45500 -29.70507 -28.54776 -27.35321 -25.60601 -24.92989 -21.83738 -21.61567 -21.03746 -18.72648 -16.88751 -16.75243 -15.72242 -15.49984 -14.95294 -14.86103 -14.54171 -14.15801 -13.84642 -13.64509 -12.92305 -12.72820 -12.60316 -12.27870 -12.00127 -11.88926 -11.60829 -11.50701 -11.25845 -11.08084 -10.83707 -10.76670 -10.72130 -10.22122 -10.20285 -9.81810 -9.12020 -8.77642 -8.49347 -8.39428 -7.98826 -6.07930 -4.05963 3.26209 3.33131 3.34803 3.97507 4.19097 4.38319 4.69465 4.82834 5.04321 5.13214 5.23516 5.25780 5.34629 5.40210 5.55549 5.56708 5.69105 5.72300 5.78640 5.80526 5.89018 5.92634 5.98177 6.07751 6.08438 6.20406 6.28622 6.39671 6.65603 6.66345 6.96682 7.04969 7.19404 7.32841 7.40392 7.64967 8.10902 8.73803 9.05374 9.52160 11.05282 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029225 B = 0.005811 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.859311 B = 4817.309303 C = 4992.294137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.085 3.915 3 H 0.080 0.920 4 C 0.061 3.939 5 N -0.516 5.516 6 C 0.056 3.944 7 C 0.063 3.937 8 O -0.363 6.363 9 C 0.168 3.832 10 C -0.513 4.513 11 H 0.082 0.918 12 C 0.071 3.929 13 N -0.897 5.897 14 Si 0.875 3.125 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.267 1.267 18 C 0.085 3.915 19 H 0.041 0.959 20 C -0.148 4.148 21 C 0.060 3.940 22 N -0.688 5.688 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.077 0.923 26 H 0.033 0.967 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.036 0.964 32 H -0.001 1.001 33 H -0.005 1.005 34 H 0.265 0.735 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.282 1.705 -10.033 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.025 4.025 3 H 0.098 0.902 4 C -0.067 4.067 5 N -0.242 5.242 6 C -0.072 4.072 7 C -0.016 4.016 8 O -0.281 6.281 9 C 0.093 3.907 10 C -0.551 4.551 11 H 0.100 0.900 12 C -0.130 4.130 13 N -0.536 5.536 14 Si 0.702 3.298 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.024 4.024 19 H 0.059 0.941 20 C -0.206 4.206 21 C -0.069 4.069 22 N -0.319 5.319 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.017 0.983 33 H 0.013 0.987 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 15.111 1.472 -9.847 18.096 hybrid contribution 0.177 0.866 0.977 1.318 sum 15.288 2.338 -8.870 17.828 Atomic orbital electron populations 1.22365 0.96056 1.03860 1.01337 1.21608 0.93988 0.96912 0.89970 0.90165 1.22187 0.97063 0.89557 0.97914 1.62041 1.59568 1.01359 1.01208 1.22212 0.95706 0.99861 0.89377 1.22344 0.85466 0.98154 0.95591 1.88011 1.14189 1.79096 1.46854 1.20569 0.92277 0.92275 0.85624 1.20893 0.87969 1.36958 1.09288 0.89964 1.24765 0.94696 0.95769 0.97791 1.69876 1.00370 1.46822 1.36503 0.86867 0.78933 0.80708 0.83327 1.20015 1.20843 1.19181 1.21612 0.96810 0.93810 0.90124 0.94146 1.21896 1.02897 0.94444 1.01383 1.22044 0.98955 0.88812 0.97134 1.60764 1.63152 1.03031 1.04906 0.91819 0.93933 0.90455 0.94872 0.89992 0.89378 0.94451 0.94296 0.94572 0.98331 0.98738 0.92462 0.92534 0.92131 0.91195 0.93375 0.90913 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 8.83 37.16 0.33 -2.19 16 2 C 0.09 1.08 3.69 -67.65 -0.25 0.83 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 4 C 0.06 0.85 4.84 -3.77 -0.02 0.83 16 5 N -0.52 -7.76 3.79 -226.45 -0.86 -8.62 16 6 C 0.06 0.84 5.11 -3.82 -0.02 0.82 16 7 C 0.06 1.12 6.00 37.16 0.22 1.34 16 8 O -0.36 -8.56 10.27 -35.23 -0.36 -8.93 16 9 C 0.17 4.34 4.76 36.01 0.17 4.51 16 10 C -0.51 -15.47 9.99 -34.44 -0.34 -15.81 16 11 H 0.08 2.72 8.06 -52.49 -0.42 2.30 16 12 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 13 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 14 Si 0.87 21.69 27.47 -169.99 -4.67 17.02 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 18 C 0.09 1.10 2.56 -67.63 -0.17 0.92 16 19 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 20 C -0.15 -1.78 8.89 37.16 0.33 -1.45 16 21 C 0.06 0.71 5.62 -3.76 -0.02 0.69 16 22 N -0.69 -7.91 6.70 -106.58 -0.71 -8.63 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.08 1.28 5.94 -51.93 -0.31 0.98 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 1.22 6.24 -51.93 -0.32 0.89 16 28 H 0.09 1.33 5.74 -51.94 -0.30 1.03 16 29 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.62 6.28 -51.93 -0.33 0.30 16 32 H 0.00 -0.02 7.20 -51.93 -0.37 -0.40 16 33 H -0.01 -0.13 7.57 -51.93 -0.39 -0.52 16 34 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.72 6.16 -51.93 -0.32 0.40 16 37 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 38 H 0.05 0.63 6.35 -51.93 -0.33 0.31 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.34 3.29 8.89 -39.29 -0.35 2.94 16 LS Contribution 306.84 15.07 4.62 4.62 Total: -1.00 -31.89 306.84 -7.92 -39.80 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.84 Total: -0.59 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 0.13 Total: -7.49 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.80 Total: -44.44 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.36 Total: -8.93 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.89 -7.92 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385247621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.155 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds