Wall clock time and date at job start Mon Mar 30 2020 04:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49110 * 2 1 4 4 C 1.53049 * 109.49425 * 120.04535 * 2 1 3 5 5 N 1.46956 * 109.37889 * 61.57347 * 4 2 1 6 6 C 1.46907 * 111.00063 * 183.19787 * 5 4 2 7 7 C 1.53006 * 109.46565 * 66.04698 * 6 5 4 8 8 O 1.42900 * 109.46957 * 65.00214 * 7 6 5 9 9 C 1.42904 * 113.99774 * 179.97438 * 8 7 6 10 10 C 1.50708 * 109.46748 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99795 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99601 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99735 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00077 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47280 * 89.99711 * 14 12 10 16 16 H 1.48500 * 109.46787 * 209.99677 * 14 12 10 17 17 H 1.48497 * 109.47012 * 329.99455 * 14 12 10 18 18 C 1.46998 * 110.85606 * 59.31765 * 5 4 2 19 19 H 1.08997 * 109.50642 * 60.67078 * 18 5 4 20 20 C 1.52999 * 109.48649 * 180.72329 * 18 5 4 21 21 C 1.53062 * 109.37366 * 300.68752 * 18 5 4 22 22 N 1.46954 * 109.35871 * 58.40489 * 21 18 5 23 23 H 1.09000 * 109.46766 * 299.95576 * 1 2 3 24 24 H 1.08990 * 109.47185 * 59.95263 * 1 2 3 25 25 H 1.08994 * 109.46985 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.49200 * 181.55498 * 4 2 1 27 27 H 1.09002 * 109.48985 * 301.59917 * 4 2 1 28 28 H 1.08989 * 109.47352 * 186.04595 * 6 5 4 29 29 H 1.09001 * 109.47106 * 306.05350 * 6 5 4 30 30 H 1.09002 * 109.46758 * 184.99848 * 7 6 5 31 31 H 1.08998 * 109.47522 * 304.99932 * 7 6 5 32 32 H 1.08999 * 109.47478 * 299.99894 * 9 8 7 33 33 H 1.08997 * 109.46971 * 60.00451 * 9 8 7 34 34 H 0.96999 * 120.00354 * 180.02562 * 13 12 10 35 35 H 1.08994 * 109.47660 * 179.89875 * 20 18 5 36 36 H 1.09005 * 109.46714 * 299.90183 * 20 18 5 37 37 H 1.09008 * 109.47318 * 59.89499 * 20 18 5 38 38 H 1.09002 * 109.48764 * 298.44108 * 21 18 5 39 39 H 1.08993 * 109.50447 * 178.38176 * 21 18 5 40 40 H 1.00900 * 110.99879 * 176.81194 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0407 -0.7224 1.2489 5 7 1.5814 -2.1181 1.2270 6 6 1.9884 -2.8255 2.4485 7 6 1.2626 -2.2223 3.6529 8 8 -0.1415 -2.4575 3.5298 9 6 -0.9157 -1.9318 4.6097 10 6 -2.3735 -2.2352 4.3769 11 1 -2.6780 -2.7758 3.4929 12 6 -3.3181 -1.8235 5.2930 13 7 -4.5901 -2.0887 5.0901 14 14 -2.7912 -0.8891 6.8222 15 1 -2.7936 0.5682 6.5372 16 1 -3.7373 -1.1785 7.9296 17 1 -1.4238 -1.3143 7.2154 18 6 2.0721 -2.8118 0.0275 19 1 3.1621 -2.8119 0.0274 20 6 1.5617 -4.2542 0.0274 21 6 1.5614 -2.0894 -1.2215 22 7 2.0207 -0.6937 -1.1990 23 1 -0.3633 0.5132 0.8904 24 1 -0.3633 0.5145 -0.8895 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1304 -0.6983 1.2629 27 1 1.6546 -0.2264 2.1394 28 1 1.7306 -3.8808 2.3602 29 1 3.0650 -2.7246 2.5852 30 1 1.6299 -2.6864 4.5682 31 1 1.4494 -1.1490 3.6895 32 1 -0.5936 -2.3902 5.5447 33 1 -0.7743 -0.8525 4.6664 34 1 -5.2548 -1.7988 5.7343 35 1 1.9241 -4.7679 -0.8629 36 1 1.9255 -4.7684 0.9170 37 1 0.4716 -4.2539 0.0282 38 1 0.4717 -2.1135 -1.2354 39 1 1.9476 -2.5851 -2.1120 40 1 1.7413 -0.2075 -2.0378 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385247621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:30 Heat of formation + Delta-G solvation = -60.423815 kcal Electronic energy + Delta-G solvation = -18573.136786 eV Core-core repulsion = 15807.983877 eV Total energy + Delta-G solvation = -2765.152910 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70600 -38.55019 -36.11609 -34.83734 -33.80860 -31.13155 -29.91882 -29.04933 -26.66762 -26.08847 -23.95334 -22.76486 -22.22543 -19.77443 -19.03572 -17.88370 -17.39400 -16.81916 -16.43185 -16.16539 -15.90880 -15.56528 -15.07004 -14.89486 -14.67189 -14.09776 -14.07688 -13.69913 -13.33069 -13.06812 -12.91312 -12.80466 -12.60729 -12.50373 -12.41247 -12.24499 -11.85879 -11.79471 -11.54375 -11.28473 -11.23706 -10.91295 -10.26955 -9.47382 -9.06400 -8.36887 -6.44051 1.31709 1.34942 1.45849 2.28907 2.89521 2.95565 3.15201 3.25654 3.81834 3.99154 4.04229 4.18917 4.28049 4.33382 4.37129 4.43515 4.52231 4.56383 4.60848 4.71330 4.73708 4.78048 4.81001 4.88068 4.96088 4.97324 5.01879 5.10629 5.18025 5.37064 5.45403 5.47993 5.94613 5.96687 6.16360 6.28627 6.50711 6.60133 6.82230 7.20624 8.80470 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029225 B = 0.005811 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.859311 B = 4817.309303 C = 4992.294137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.090 3.910 3 H 0.100 0.900 4 C 0.061 3.939 5 N -0.542 5.542 6 C 0.061 3.939 7 C 0.054 3.946 8 O -0.389 6.389 9 C 0.181 3.819 10 C -0.540 4.540 11 H 0.027 0.973 12 C 0.012 3.988 13 N -0.943 5.943 14 Si 0.955 3.045 15 H -0.260 1.260 16 H -0.272 1.272 17 H -0.246 1.246 18 C 0.086 3.914 19 H 0.049 0.951 20 C -0.144 4.144 21 C 0.062 3.938 22 N -0.682 5.682 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.009 0.991 33 H 0.005 0.995 34 H 0.272 0.728 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.028 0.972 39 H 0.096 0.904 40 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.760 2.790 -9.525 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 H 0.118 0.882 4 C -0.067 4.067 5 N -0.268 5.268 6 C -0.067 4.067 7 C -0.023 4.023 8 O -0.309 6.309 9 C 0.105 3.895 10 C -0.578 4.578 11 H 0.046 0.954 12 C -0.185 4.185 13 N -0.583 5.583 14 Si 0.776 3.224 15 H -0.185 1.185 16 H -0.197 1.197 17 H -0.170 1.170 18 C -0.023 4.023 19 H 0.067 0.933 20 C -0.202 4.202 21 C -0.068 4.068 22 N -0.313 5.313 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.026 0.974 33 H 0.022 0.978 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.114 0.886 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 17.610 2.550 -9.369 20.110 hybrid contribution -0.622 0.464 0.698 1.044 sum 16.988 3.014 -8.672 19.310 Atomic orbital electron populations 1.22291 0.97732 1.01781 1.01130 1.21586 0.92409 0.97923 0.90149 0.88240 1.22181 0.97568 0.89016 0.97949 1.62015 1.60720 1.02142 1.01932 1.22158 0.96748 0.99293 0.88454 1.22687 0.82453 0.99287 0.97857 1.87972 1.17340 1.79268 1.46296 1.20256 0.90018 0.92739 0.86521 1.21141 0.91197 1.37386 1.08059 0.95434 1.25835 0.94366 0.96492 1.01838 1.70035 1.01991 1.47947 1.38287 0.85615 0.79576 0.79307 0.77877 1.18497 1.19736 1.16968 1.21670 0.97110 0.93906 0.89581 0.93337 1.21864 1.01093 0.94581 1.02630 1.22052 0.97825 0.89277 0.97645 1.60772 1.62605 1.02846 1.05043 0.93836 0.92267 0.93415 0.93752 0.91387 0.89862 0.91561 0.92717 0.93687 0.97360 0.97780 0.91861 0.90027 0.92168 0.93856 0.95363 0.88629 0.82941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.87 8.83 71.98 0.64 -4.23 16 2 C 0.09 2.13 3.69 44.92 0.17 2.30 16 3 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 4 C 0.06 1.61 4.84 86.31 0.42 2.03 16 5 N -0.54 -15.90 3.79 -870.35 -3.30 -19.20 16 6 C 0.06 1.75 5.11 86.30 0.44 2.19 16 7 C 0.05 1.88 6.00 71.98 0.43 2.31 16 8 O -0.39 -18.63 10.27 -148.98 -1.53 -20.16 16 9 C 0.18 9.32 4.76 71.24 0.34 9.66 16 10 C -0.54 -33.73 9.99 25.60 0.26 -33.48 16 11 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 12 C 0.01 0.75 5.47 84.66 0.46 1.21 16 13 N -0.94 -60.34 13.96 21.45 0.30 -60.04 16 14 Si 0.96 44.17 27.47 68.60 1.88 46.05 16 15 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 17 H -0.25 -10.51 6.54 99.48 0.65 -9.85 16 18 C 0.09 2.08 2.56 44.92 0.12 2.20 16 19 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 20 C -0.14 -3.35 8.89 71.98 0.64 -2.71 16 21 C 0.06 1.37 5.62 86.31 0.49 1.86 16 22 N -0.68 -14.20 6.70 -491.12 -3.29 -17.49 16 23 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.05 1.64 5.94 -2.39 -0.01 1.63 16 26 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.96 6.24 -2.39 -0.01 1.95 16 28 H 0.08 2.45 5.74 -2.39 -0.01 2.44 16 29 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 31 H 0.05 1.48 6.28 -2.39 -0.01 1.46 16 32 H 0.01 0.43 7.20 -2.39 -0.02 0.41 16 33 H 0.00 0.22 7.57 -2.39 -0.02 0.20 16 34 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.39 6.16 -2.38 -0.01 1.37 16 37 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.03 0.75 6.35 -2.39 -0.02 0.73 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.35 5.97 8.89 -89.69 -0.80 5.17 16 Total: -1.00 -71.15 306.84 -1.39 -72.54 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.16 Total: 14.99 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 4.39 Total: -16.68 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -6.29 Total: -96.74 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -1.53 Total: -20.16 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Total: -71.15 -1.39 -72.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385247621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.114 kcal (2) G-P(sol) polarization free energy of solvation -71.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds