Wall clock time and date at job start Mon Mar 30 2020 04:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.50387 * 2 1 4 4 C 1.53050 * 109.48601 * 239.94353 * 2 1 3 5 5 N 1.46964 * 109.36070 * 181.62891 * 4 2 1 6 6 C 1.46957 * 110.87754 * 59.32629 * 5 4 2 7 7 H 1.09001 * 109.49030 * 60.66410 * 6 5 4 8 8 C 1.52998 * 109.49011 * 180.71227 * 6 5 4 9 9 C 1.53053 * 109.37952 * 300.68709 * 6 5 4 10 10 N 1.46954 * 109.36425 * 58.37206 * 9 6 5 11 11 C 1.46901 * 110.99949 * 176.83319 * 10 9 6 12 12 C 1.53002 * 109.47139 * 48.46766 * 11 10 9 13 13 O 1.42892 * 109.47116 * 66.38307 * 12 11 10 14 14 C 1.42902 * 113.99881 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47139 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00176 * 0.02562 * 15 14 13 17 17 C 1.37886 * 120.00166 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00119 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99756 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46829 * 89.99992 * 19 17 15 21 21 H 1.48494 * 109.47160 * 209.99821 * 19 17 15 22 22 H 1.48497 * 109.47216 * 330.00531 * 19 17 15 23 23 H 1.09001 * 109.47415 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47771 * 300.05266 * 1 2 3 25 25 H 1.09006 * 109.47308 * 60.05626 * 1 2 3 26 26 H 1.08996 * 109.49076 * 61.66803 * 4 2 1 27 27 H 1.08995 * 109.51115 * 301.60849 * 4 2 1 28 28 H 1.00901 * 110.99699 * 183.18870 * 5 4 2 29 29 H 1.09001 * 109.47259 * 59.95280 * 8 6 5 30 30 H 1.09000 * 109.46908 * 299.95587 * 8 6 5 31 31 H 1.08997 * 109.47580 * 179.97438 * 8 6 5 32 32 H 1.09006 * 109.48968 * 178.36141 * 9 6 5 33 33 H 1.09005 * 109.49104 * 298.42611 * 9 6 5 34 34 H 1.09001 * 109.47377 * 168.46736 * 11 10 9 35 35 H 1.09002 * 109.47081 * 288.46575 * 11 10 9 36 36 H 1.08999 * 109.46713 * 186.38492 * 12 11 10 37 37 H 1.09000 * 109.46915 * 306.37895 * 12 11 10 38 38 H 1.08993 * 109.47601 * 299.99684 * 14 13 12 39 39 H 1.09008 * 109.47011 * 60.00007 * 14 13 12 40 40 H 0.97005 * 120.00043 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0406 -0.7227 -1.2488 5 7 3.5097 -0.7552 -1.2265 6 6 3.9999 -1.4491 -0.0274 7 1 3.6362 -2.4767 -0.0276 8 6 5.5299 -1.4491 -0.0273 9 6 3.4893 -0.7270 1.2217 10 7 2.0203 -0.6939 1.1991 11 6 1.4888 -0.0739 2.4202 12 6 2.2247 1.2408 2.6866 13 8 1.9138 2.1784 1.6542 14 6 2.5533 3.4469 1.8091 15 6 2.1571 4.3516 0.6709 16 1 1.4838 3.9938 -0.0941 17 6 2.6532 5.6365 0.6067 18 7 2.3070 6.4261 -0.3863 19 14 3.8170 6.2555 1.9302 20 1 5.2178 5.9604 1.5350 21 1 3.6470 7.7217 2.0926 22 1 3.5118 5.5763 3.2150 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5146 0.8895 25 1 -0.3634 0.5130 -0.8905 26 1 1.7022 -0.1930 -2.1393 27 1 1.6544 -1.7418 -1.2631 28 1 3.8747 -1.1811 -2.0652 29 1 5.8933 -0.4214 -0.0271 30 1 5.8933 -1.9627 -0.9174 31 1 5.8933 -1.9634 0.8624 32 1 3.8277 -1.2569 2.1121 33 1 3.8755 0.2923 1.2360 34 1 0.4246 0.1247 2.2934 35 1 1.6343 -0.7492 3.2635 36 1 1.9115 1.6437 3.6498 37 1 3.2994 1.0591 2.7010 38 1 2.2465 3.8955 2.7539 39 1 3.6349 3.3113 1.8055 40 1 2.6563 7.3299 -0.4317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385247622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:34 Heat of formation + Delta-G solvation = -36.719642 kcal Electronic energy + Delta-G solvation = -18874.043197 eV Core-core repulsion = 16109.918177 eV Total energy + Delta-G solvation = -2764.125020 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.50140 -36.87862 -34.75798 -32.91849 -32.49542 -29.65323 -28.79997 -27.43889 -24.94825 -24.65285 -22.05616 -21.56379 -20.86569 -18.95846 -16.83488 -16.18856 -15.86383 -15.52984 -15.16778 -14.80032 -14.43253 -14.06474 -13.86596 -13.40461 -12.99258 -12.58752 -12.52947 -12.16476 -11.89097 -11.60396 -11.60212 -11.40110 -11.29885 -11.00082 -10.86672 -10.76585 -10.47318 -10.42256 -10.11699 -9.85610 -9.18308 -8.83413 -8.46959 -8.28880 -7.80214 -6.10942 -4.09523 3.24611 3.31473 3.32756 4.15655 4.29877 4.35845 4.67793 4.97643 5.14452 5.20654 5.27615 5.44594 5.48189 5.54086 5.63576 5.68341 5.70440 5.85148 5.87065 5.91079 5.97406 6.02218 6.09287 6.13513 6.20200 6.30968 6.36617 6.58611 6.61044 6.89964 7.00318 7.15737 7.33077 7.47766 7.58826 7.61412 7.99754 8.65558 9.00132 9.48594 11.02031 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023210 B = 0.006919 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.099439 B = 4045.646770 C = 4192.147050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 H 0.097 0.903 4 C 0.069 3.931 5 N -0.684 5.684 6 C 0.088 3.912 7 H 0.039 0.961 8 C -0.145 4.145 9 C 0.055 3.945 10 N -0.531 5.531 11 C 0.051 3.949 12 C 0.018 3.982 13 O -0.371 6.371 14 C 0.169 3.831 15 C -0.515 4.515 16 H 0.082 0.918 17 C 0.073 3.927 18 N -0.895 5.895 19 Si 0.874 3.126 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.268 1.268 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.028 0.972 28 H 0.337 0.663 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.000 1.000 39 H -0.005 1.005 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.067 -16.323 2.929 16.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.040 4.040 3 H 0.114 0.886 4 C -0.061 4.061 5 N -0.315 5.315 6 C -0.022 4.022 7 H 0.057 0.943 8 C -0.203 4.203 9 C -0.073 4.073 10 N -0.255 5.255 11 C -0.077 4.077 12 C -0.061 4.061 13 O -0.291 6.291 14 C 0.093 3.907 15 C -0.553 4.553 16 H 0.100 0.900 17 C -0.129 4.129 18 N -0.533 5.533 19 Si 0.701 3.299 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.192 1.192 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.155 0.845 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.018 0.982 39 H 0.013 0.987 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.849 -16.034 2.949 16.408 hybrid contribution 0.973 0.468 0.738 1.308 sum 2.822 -15.566 3.688 16.244 Atomic orbital electron populations 1.21790 0.94701 1.00790 1.02368 1.21930 0.94842 0.99164 0.88018 0.88551 1.22021 0.87031 0.98466 0.98549 1.60459 1.08857 1.58016 1.04210 1.21469 0.94608 0.95260 0.90824 0.94314 1.21789 0.94452 1.02786 1.01290 1.22222 0.88309 1.00196 0.96580 1.62432 1.07808 1.52835 1.02443 1.22369 1.00667 0.92014 0.92666 1.23139 0.98865 0.91685 0.92374 1.87936 1.71263 1.24031 1.45844 1.20584 0.91556 0.81195 0.97318 1.20856 1.29662 0.96087 1.08697 0.89968 1.24752 0.96174 0.96283 0.95670 1.69870 1.44603 1.07918 1.30928 0.86875 0.81822 0.78435 0.82751 1.19972 1.20792 1.19243 0.93276 0.91805 0.92316 0.90540 0.95363 0.84520 0.91560 0.92792 0.92315 0.91258 0.92736 0.89415 0.90251 0.94308 0.93996 0.98193 0.98704 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.92 37.16 0.33 -1.77 16 2 C 0.07 1.15 2.15 -67.65 -0.15 1.00 16 3 H 0.10 2.07 5.63 -51.93 -0.29 1.78 16 4 C 0.07 1.02 6.00 -3.76 -0.02 0.99 16 5 N -0.68 -9.86 6.55 -106.58 -0.70 -10.56 16 6 C 0.09 1.17 3.19 -67.66 -0.22 0.96 16 7 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 8 C -0.15 -1.63 9.46 37.16 0.35 -1.28 16 9 C 0.06 0.82 4.04 -3.77 -0.02 0.80 16 10 N -0.53 -8.18 4.73 -226.48 -1.07 -9.25 16 11 C 0.05 0.76 5.85 -3.82 -0.02 0.74 16 12 C 0.02 0.33 5.52 37.16 0.21 0.53 16 13 O -0.37 -8.44 7.49 -35.23 -0.26 -8.70 16 14 C 0.17 4.31 4.76 36.00 0.17 4.48 16 15 C -0.52 -15.32 9.99 -34.44 -0.34 -15.67 16 16 H 0.08 2.67 8.06 -52.48 -0.42 2.24 16 17 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 18 N -0.89 -27.73 13.96 55.43 0.77 -26.96 16 19 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 1.01 6.05 -51.93 -0.31 0.70 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.34 4.07 8.83 -39.29 -0.35 3.72 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.97 6.27 -51.93 -0.33 0.64 16 34 H 0.09 1.32 5.52 -51.93 -0.29 1.03 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.04 0.73 5.98 -51.93 -0.31 0.42 16 38 H 0.00 0.01 7.20 -51.93 -0.37 -0.36 16 39 H 0.00 -0.12 7.57 -51.92 -0.39 -0.51 16 40 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 305.29 15.07 4.60 4.60 Total: -1.00 -31.38 305.29 -8.02 -39.39 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.88 Total: 1.59 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 0.20 Total: -7.15 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -1.00 Total: -46.77 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.26 Total: -8.70 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.38 -8.02 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385247622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.674 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds