Wall clock time and date at job start Mon Mar 30 2020 04:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.50387 * 2 1 4 4 C 1.53050 * 109.48601 * 239.94353 * 2 1 3 5 5 N 1.46964 * 109.36070 * 181.62891 * 4 2 1 6 6 C 1.46957 * 110.87754 * 59.32629 * 5 4 2 7 7 H 1.09001 * 109.49030 * 60.66410 * 6 5 4 8 8 C 1.52998 * 109.49011 * 180.71227 * 6 5 4 9 9 C 1.53053 * 109.37952 * 300.68709 * 6 5 4 10 10 N 1.46954 * 109.36425 * 58.37206 * 9 6 5 11 11 C 1.46901 * 110.99949 * 176.83319 * 10 9 6 12 12 C 1.53002 * 109.47139 * 48.46766 * 11 10 9 13 13 O 1.42892 * 109.47116 * 66.38307 * 12 11 10 14 14 C 1.42902 * 113.99881 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47139 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00176 * 0.02562 * 15 14 13 17 17 C 1.37886 * 120.00166 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00119 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99756 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46829 * 89.99992 * 19 17 15 21 21 H 1.48494 * 109.47160 * 209.99821 * 19 17 15 22 22 H 1.48497 * 109.47216 * 330.00531 * 19 17 15 23 23 H 1.09001 * 109.47415 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47771 * 300.05266 * 1 2 3 25 25 H 1.09006 * 109.47308 * 60.05626 * 1 2 3 26 26 H 1.08996 * 109.49076 * 61.66803 * 4 2 1 27 27 H 1.08995 * 109.51115 * 301.60849 * 4 2 1 28 28 H 1.00901 * 110.99699 * 183.18870 * 5 4 2 29 29 H 1.09001 * 109.47259 * 59.95280 * 8 6 5 30 30 H 1.09000 * 109.46908 * 299.95587 * 8 6 5 31 31 H 1.08997 * 109.47580 * 179.97438 * 8 6 5 32 32 H 1.09006 * 109.48968 * 178.36141 * 9 6 5 33 33 H 1.09005 * 109.49104 * 298.42611 * 9 6 5 34 34 H 1.09001 * 109.47377 * 168.46736 * 11 10 9 35 35 H 1.09002 * 109.47081 * 288.46575 * 11 10 9 36 36 H 1.08999 * 109.46713 * 186.38492 * 12 11 10 37 37 H 1.09000 * 109.46915 * 306.37895 * 12 11 10 38 38 H 1.08993 * 109.47601 * 299.99684 * 14 13 12 39 39 H 1.09008 * 109.47011 * 60.00007 * 14 13 12 40 40 H 0.97005 * 120.00043 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0406 -0.7227 -1.2488 5 7 3.5097 -0.7552 -1.2265 6 6 3.9999 -1.4491 -0.0274 7 1 3.6362 -2.4767 -0.0276 8 6 5.5299 -1.4491 -0.0273 9 6 3.4893 -0.7270 1.2217 10 7 2.0203 -0.6939 1.1991 11 6 1.4888 -0.0739 2.4202 12 6 2.2247 1.2408 2.6866 13 8 1.9138 2.1784 1.6542 14 6 2.5533 3.4469 1.8091 15 6 2.1571 4.3516 0.6709 16 1 1.4838 3.9938 -0.0941 17 6 2.6532 5.6365 0.6067 18 7 2.3070 6.4261 -0.3863 19 14 3.8170 6.2555 1.9302 20 1 5.2178 5.9604 1.5350 21 1 3.6470 7.7217 2.0926 22 1 3.5118 5.5763 3.2150 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5146 0.8895 25 1 -0.3634 0.5130 -0.8905 26 1 1.7022 -0.1930 -2.1393 27 1 1.6544 -1.7418 -1.2631 28 1 3.8747 -1.1811 -2.0652 29 1 5.8933 -0.4214 -0.0271 30 1 5.8933 -1.9627 -0.9174 31 1 5.8933 -1.9634 0.8624 32 1 3.8277 -1.2569 2.1121 33 1 3.8755 0.2923 1.2360 34 1 0.4246 0.1247 2.2934 35 1 1.6343 -0.7492 3.2635 36 1 1.9115 1.6437 3.6498 37 1 3.2994 1.0591 2.7010 38 1 2.2465 3.8955 2.7539 39 1 3.6349 3.3113 1.8055 40 1 2.6563 7.3299 -0.4317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385247622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:33 Heat of formation + Delta-G solvation = -61.353510 kcal Electronic energy + Delta-G solvation = -18875.111402 eV Core-core repulsion = 16109.918177 eV Total energy + Delta-G solvation = -2765.193224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75121 -38.47480 -36.06088 -34.82822 -34.00242 -31.06096 -30.24070 -29.14834 -26.20716 -25.80482 -24.07222 -22.98261 -21.99991 -20.26263 -19.00994 -17.54481 -17.42931 -16.85834 -16.64384 -16.18762 -16.04553 -15.45778 -15.28305 -14.73105 -14.71557 -14.22977 -13.76946 -13.48202 -13.30203 -13.16122 -12.75543 -12.68011 -12.66465 -12.54511 -12.46746 -12.25464 -11.88240 -11.75582 -11.61893 -11.35403 -11.32909 -10.93035 -10.31754 -9.40899 -9.10958 -8.39181 -6.46215 1.28757 1.31477 1.42023 2.25846 2.86468 2.93148 3.18214 3.24701 3.86657 3.98339 4.16364 4.22890 4.24584 4.35109 4.41993 4.45960 4.48801 4.58417 4.71328 4.73295 4.77771 4.80843 4.85730 4.91433 4.94552 4.99083 5.07797 5.12208 5.34350 5.35251 5.40387 5.54435 5.90492 6.03121 6.12813 6.24260 6.56538 6.57380 6.71089 7.17635 8.77774 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023210 B = 0.006919 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.099439 B = 4045.646770 C = 4192.147050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.068 3.932 3 H 0.043 0.957 4 C 0.073 3.927 5 N -0.704 5.704 6 C 0.089 3.911 7 H 0.051 0.949 8 C -0.139 4.139 9 C 0.054 3.946 10 N -0.522 5.522 11 C 0.053 3.947 12 C 0.011 3.989 13 O -0.388 6.388 14 C 0.182 3.818 15 C -0.538 4.538 16 H 0.031 0.969 17 C 0.015 3.985 18 N -0.940 5.940 19 Si 0.952 3.048 20 H -0.262 1.262 21 H -0.271 1.271 22 H -0.249 1.249 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.350 0.650 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.020 0.980 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.008 0.992 39 H -0.001 1.001 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.296 -18.046 4.861 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.040 4.040 3 H 0.061 0.939 4 C -0.056 4.056 5 N -0.337 5.337 6 C -0.021 4.021 7 H 0.069 0.931 8 C -0.197 4.197 9 C -0.074 4.074 10 N -0.246 5.246 11 C -0.075 4.075 12 C -0.068 4.068 13 O -0.308 6.308 14 C 0.106 3.894 15 C -0.576 4.576 16 H 0.049 0.951 17 C -0.183 4.183 18 N -0.579 5.579 19 Si 0.773 3.227 20 H -0.187 1.187 21 H -0.196 1.196 22 H -0.172 1.172 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.169 0.831 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.038 0.962 34 H 0.103 0.897 35 H 0.134 0.866 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.016 0.984 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.073 -17.786 4.879 18.698 hybrid contribution 0.528 0.946 0.066 1.085 sum 3.601 -16.841 4.945 17.917 Atomic orbital electron populations 1.21724 0.93798 1.01916 1.01583 1.21811 0.95667 0.96683 0.89877 0.93868 1.21920 0.87575 0.98882 0.97271 1.60434 1.08651 1.59120 1.05503 1.21528 0.95800 0.95227 0.89497 0.93116 1.21749 0.92914 1.01925 1.03076 1.22314 0.87708 0.98780 0.98634 1.62520 1.08279 1.51795 1.02001 1.22507 1.00116 0.91128 0.93699 1.23471 0.99790 0.91869 0.91635 1.87958 1.71170 1.23594 1.48067 1.20236 0.91638 0.82068 0.95471 1.21088 1.29467 0.97709 1.09289 0.95074 1.25786 0.97976 0.96140 0.98446 1.70024 1.46059 1.08622 1.33235 0.85664 0.79121 0.78257 0.79641 1.18725 1.19554 1.17228 0.90973 0.92891 0.92919 0.91110 0.93670 0.83074 0.93666 0.91229 0.90352 0.88787 0.96190 0.89662 0.86625 0.92972 0.93527 0.97483 0.98360 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 8.92 71.98 0.64 -3.39 16 2 C 0.07 2.31 2.15 44.92 0.10 2.41 16 3 H 0.04 1.96 5.63 -2.39 -0.01 1.95 16 4 C 0.07 2.14 6.00 86.31 0.52 2.66 16 5 N -0.70 -19.89 6.55 -491.13 -3.22 -23.10 16 6 C 0.09 2.20 3.19 44.92 0.14 2.34 16 7 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 8 C -0.14 -2.83 9.46 71.98 0.68 -2.15 16 9 C 0.05 1.51 4.04 86.31 0.35 1.86 16 10 N -0.52 -15.34 4.73 -870.46 -4.12 -19.46 16 11 C 0.05 1.49 5.85 86.30 0.51 2.00 16 12 C 0.01 0.36 5.52 71.98 0.40 0.76 16 13 O -0.39 -18.05 7.49 -148.98 -1.12 -19.17 16 14 C 0.18 9.38 4.76 71.23 0.34 9.72 16 15 C -0.54 -33.35 9.99 25.60 0.26 -33.09 16 16 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 17 C 0.01 0.88 5.47 84.66 0.46 1.34 16 18 N -0.94 -59.98 13.96 21.45 0.30 -59.68 16 19 Si 0.95 44.54 27.47 68.60 1.88 46.42 16 20 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 23 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.05 1.70 6.05 -2.39 -0.01 1.69 16 25 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.35 8.10 8.83 -89.69 -0.79 7.31 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.02 0.70 6.27 -2.38 -0.01 0.69 16 34 H 0.09 2.45 5.52 -2.39 -0.01 2.44 16 35 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 1.57 5.98 -2.39 -0.01 1.55 16 38 H 0.01 0.37 7.20 -2.39 -0.02 0.36 16 39 H 0.00 -0.06 7.57 -2.38 -0.02 -0.08 16 40 H 0.27 15.96 8.31 -92.70 -0.77 15.19 16 Total: -1.00 -70.67 305.29 -1.72 -72.38 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.16 Total: 18.14 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 4.39 Total: -15.54 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -7.04 Total: -102.24 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -1.12 Total: -19.17 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Total: -70.67 -1.72 -72.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385247622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.028 kcal (2) G-P(sol) polarization free energy of solvation -70.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds