Wall clock time and date at job start Mon Mar 30 2020 03:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47215 * 2 1 4 4 N 1.46895 * 109.47290 * 179.97438 * 3 2 1 5 5 C 1.46897 * 111.00103 * 189.99983 * 4 3 2 6 6 C 1.52998 * 109.47117 * 71.95316 * 5 4 3 7 7 O 1.42900 * 109.47157 * 64.14971 * 6 5 4 8 8 C 1.42897 * 113.99878 * 179.97438 * 7 6 5 9 9 C 1.50711 * 109.46908 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99552 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00014 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99902 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00150 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46951 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47190 * 120.00159 * 13 11 9 16 16 H 1.48492 * 109.47301 * 240.00281 * 13 11 9 17 17 C 1.46900 * 110.99965 * 66.04123 * 4 3 2 18 18 C 1.53517 * 114.16900 * 175.04363 * 17 4 3 19 19 N 1.47481 * 87.93074 * 139.67439 * 18 17 4 20 20 C 1.47483 * 87.83712 * 332.98943 * 19 18 17 21 21 H 1.08999 * 109.47179 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47739 * 300.00368 * 1 2 3 23 23 H 1.08998 * 109.47136 * 60.00579 * 1 2 3 24 24 H 1.08993 * 109.47280 * 239.99608 * 2 1 3 25 25 H 1.09002 * 109.47030 * 119.99918 * 2 1 3 26 26 H 1.08998 * 109.47067 * 59.99220 * 3 2 1 27 27 H 1.08998 * 109.46595 * 299.99752 * 3 2 1 28 28 H 1.08998 * 109.46887 * 191.95934 * 5 4 3 29 29 H 1.09006 * 109.46776 * 311.95505 * 5 4 3 30 30 H 1.09009 * 109.46822 * 184.14420 * 6 5 4 31 31 H 1.08994 * 109.47236 * 304.14601 * 6 5 4 32 32 H 1.08998 * 109.47299 * 299.99611 * 8 7 6 33 33 H 1.09000 * 109.47243 * 59.99751 * 8 7 6 34 34 H 0.96994 * 120.00262 * 180.02562 * 12 11 9 35 35 H 1.08998 * 113.38607 * 41.96812 * 17 4 3 36 36 H 1.09004 * 113.47374 * 24.90648 * 18 17 4 37 37 H 1.09001 * 113.52875 * 254.44680 * 18 17 4 38 38 H 1.00894 * 111.00504 * 84.68624 * 19 18 17 39 39 H 1.08991 * 113.47758 * 141.77930 * 20 19 18 40 40 H 1.09006 * 113.47638 * 272.24994 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 0.0006 5 6 4.0353 2.7931 0.2388 6 6 3.8002 3.1818 1.6998 7 8 4.5480 2.3107 2.5507 8 6 4.3984 2.5898 3.9441 9 6 5.2254 1.6158 4.7432 10 1 5.8068 0.8590 4.2374 11 6 5.2399 1.6908 6.1198 12 7 4.5315 2.6120 6.7356 13 14 6.2655 0.4840 7.1102 14 1 6.9647 -0.4456 6.1871 15 1 7.2674 1.2291 7.9142 16 1 5.3804 -0.2905 8.0167 17 6 4.0359 0.8854 -1.2523 18 6 5.5639 0.9608 -1.3801 19 7 5.5276 -0.3899 -1.9712 20 6 4.2866 -0.6285 -1.2108 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6765 1.9564 0.8899 27 1 1.6767 1.9562 -0.8900 28 1 5.1041 2.8093 0.0258 29 1 3.5243 3.5023 -0.4126 30 1 4.1237 4.2106 1.8586 31 1 2.7391 3.0945 1.9328 32 1 4.7345 3.6062 4.1492 33 1 3.3496 2.4906 4.2239 34 1 4.5420 2.6651 7.7041 35 1 3.4969 1.2244 -2.1370 36 1 6.0784 1.0010 -0.4200 37 1 5.9052 1.7292 -2.0738 38 1 5.3419 -0.3463 -2.9619 39 1 3.5446 -1.2068 -1.7611 40 1 4.4604 -1.0124 -0.2055 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385270801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:15 Heat of formation + Delta-G solvation = -11.023574 kcal Electronic energy + Delta-G solvation = -18117.924405 eV Core-core repulsion = 15354.913650 eV Total energy + Delta-G solvation = -2763.010755 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.11185 -37.14902 -35.81830 -33.18740 -32.50574 -29.17810 -26.89385 -26.78152 -25.68162 -24.22002 -22.24333 -21.57393 -20.80575 -19.87963 -16.65181 -16.37052 -16.15663 -15.68525 -15.07369 -14.90102 -14.29886 -14.03127 -13.84395 -13.22182 -13.09758 -13.00704 -12.42092 -12.29164 -12.16476 -11.88505 -11.74539 -11.35219 -11.20147 -10.87354 -10.76175 -10.72573 -10.61474 -10.33930 -10.31887 -9.94012 -9.01069 -8.74247 -8.70859 -8.13337 -8.05698 -6.05206 -4.05762 3.33402 3.39789 3.47249 3.93701 4.15229 4.34812 4.40953 4.81716 4.88651 5.03439 5.09431 5.31513 5.32469 5.39684 5.45519 5.49640 5.55722 5.64144 5.68662 5.74188 5.84912 5.90160 5.98107 6.02746 6.04306 6.10245 6.19001 6.29689 6.34323 6.40509 7.15780 7.16052 7.24301 7.35068 7.50165 7.87330 8.23402 8.68557 9.09674 9.59088 11.06597 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020862 B = 0.005594 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.818729 B = 5004.132541 C = 5344.806656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.054 3.946 4 N -0.507 5.507 5 C 0.059 3.941 6 C 0.068 3.932 7 O -0.378 6.378 8 C 0.194 3.806 9 C -0.508 4.508 10 H 0.067 0.933 11 C 0.054 3.946 12 N -0.901 5.901 13 Si 0.906 3.094 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.006 3.994 18 C 0.021 3.979 19 N -0.651 5.651 20 C 0.031 3.969 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.024 0.976 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.001 0.999 33 H 0.002 0.998 34 H 0.262 0.738 35 H 0.062 0.938 36 H 0.114 0.886 37 H 0.063 0.937 38 H 0.329 0.671 39 H 0.063 0.937 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.280 -1.900 -17.265 18.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.074 4.074 4 N -0.231 5.231 5 C -0.069 4.069 6 C -0.010 4.010 7 O -0.297 6.297 8 C 0.120 3.880 9 C -0.546 4.546 10 H 0.085 0.915 11 C -0.146 4.146 12 N -0.541 5.541 13 Si 0.733 3.267 14 H -0.194 1.194 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.104 4.104 18 C -0.109 4.109 19 N -0.276 5.276 20 C -0.100 4.100 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.042 0.958 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.132 0.868 37 H 0.082 0.918 38 H 0.142 0.858 39 H 0.081 0.919 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.376 -2.772 -16.423 17.221 hybrid contribution -0.911 0.941 -0.324 1.349 sum -5.287 -1.831 -16.747 17.657 Atomic orbital electron populations 1.21736 0.96029 1.01526 1.01525 1.21558 0.94945 0.96574 1.02861 1.22224 0.87407 0.97333 1.00399 1.62180 1.07105 1.22353 1.31501 1.22147 1.00810 0.88180 0.95734 1.22229 0.95484 0.93277 0.90007 1.87942 1.68065 1.55180 1.18558 1.20170 0.96068 0.95990 0.75795 1.21107 1.27460 1.15425 0.90610 0.91459 1.24945 0.96023 0.96134 0.97506 1.69977 1.41121 1.33919 1.09061 0.86309 0.79824 0.80793 0.79765 1.19419 1.20931 1.20911 1.24788 0.96370 0.97457 0.91803 1.23740 0.94153 0.91233 1.01759 1.65656 1.33153 1.20773 1.08055 1.23738 0.90869 0.94408 1.00937 0.92705 0.92528 0.93356 0.92285 0.90561 0.90357 0.95756 0.89939 0.94513 0.94427 0.94725 0.98097 0.98000 0.92837 0.91994 0.86836 0.91831 0.85770 0.91899 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.12 -1.46 5.52 -26.73 -0.15 -1.61 16 3 C 0.05 0.71 4.80 -3.83 -0.02 0.70 16 4 N -0.51 -7.42 4.42 -226.32 -1.00 -8.42 16 5 C 0.06 0.88 5.24 -3.83 -0.02 0.86 16 6 C 0.07 1.28 6.08 37.16 0.23 1.50 16 7 O -0.38 -9.23 10.26 -35.23 -0.36 -9.59 16 8 C 0.19 5.42 5.69 36.01 0.20 5.63 16 9 C -0.51 -15.22 9.43 -34.44 -0.32 -15.55 16 10 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 11 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 13 Si 0.91 22.26 29.54 -169.99 -5.02 17.24 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 C 0.01 0.07 3.15 -67.49 -0.21 -0.14 16 18 C 0.02 0.26 6.86 -7.54 -0.05 0.21 16 19 N -0.65 -7.79 8.76 -122.65 -1.07 -8.86 16 20 C 0.03 0.37 6.88 -7.54 -0.05 0.32 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.65 5.66 -51.93 -0.29 0.36 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.08 1.14 6.34 -51.93 -0.33 0.81 16 27 H 0.02 0.29 8.05 -51.93 -0.42 -0.13 16 28 H 0.08 1.23 6.30 -51.93 -0.33 0.90 16 29 H 0.04 0.47 8.05 -51.93 -0.42 0.05 16 30 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.03 0.64 6.47 -51.93 -0.34 0.30 16 32 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 33 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.06 0.68 8.03 -51.93 -0.42 0.26 16 36 H 0.11 1.71 7.72 -51.93 -0.40 1.30 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.33 3.13 8.85 -39.30 -0.35 2.79 16 39 H 0.06 0.65 7.29 -51.93 -0.38 0.27 16 40 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 318.78 15.07 4.80 4.80 Total: -1.00 -31.63 318.78 -9.06 -40.69 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -7.02 Total: -1.46 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -0.13 Total: -7.76 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -1.34 Total: -43.92 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.36 Total: -9.59 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.63 -9.06 -40.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385270801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.665 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds