Wall clock time and date at job start Mon Mar 30 2020 03:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47215 * 2 1 4 4 N 1.46895 * 109.47290 * 179.97438 * 3 2 1 5 5 C 1.46897 * 111.00103 * 189.99983 * 4 3 2 6 6 C 1.52998 * 109.47117 * 71.95316 * 5 4 3 7 7 O 1.42900 * 109.47157 * 64.14971 * 6 5 4 8 8 C 1.42897 * 113.99878 * 179.97438 * 7 6 5 9 9 C 1.50711 * 109.46908 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99552 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00014 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99902 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00150 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46951 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47190 * 120.00159 * 13 11 9 16 16 H 1.48492 * 109.47301 * 240.00281 * 13 11 9 17 17 C 1.46900 * 110.99965 * 66.04123 * 4 3 2 18 18 C 1.53517 * 114.16900 * 175.04363 * 17 4 3 19 19 N 1.47481 * 87.93074 * 139.67439 * 18 17 4 20 20 C 1.47483 * 87.83712 * 332.98943 * 19 18 17 21 21 H 1.08999 * 109.47179 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47739 * 300.00368 * 1 2 3 23 23 H 1.08998 * 109.47136 * 60.00579 * 1 2 3 24 24 H 1.08993 * 109.47280 * 239.99608 * 2 1 3 25 25 H 1.09002 * 109.47030 * 119.99918 * 2 1 3 26 26 H 1.08998 * 109.47067 * 59.99220 * 3 2 1 27 27 H 1.08998 * 109.46595 * 299.99752 * 3 2 1 28 28 H 1.08998 * 109.46887 * 191.95934 * 5 4 3 29 29 H 1.09006 * 109.46776 * 311.95505 * 5 4 3 30 30 H 1.09009 * 109.46822 * 184.14420 * 6 5 4 31 31 H 1.08994 * 109.47236 * 304.14601 * 6 5 4 32 32 H 1.08998 * 109.47299 * 299.99611 * 8 7 6 33 33 H 1.09000 * 109.47243 * 59.99751 * 8 7 6 34 34 H 0.96994 * 120.00262 * 180.02562 * 12 11 9 35 35 H 1.08998 * 113.38607 * 41.96812 * 17 4 3 36 36 H 1.09004 * 113.47374 * 24.90648 * 18 17 4 37 37 H 1.09001 * 113.52875 * 254.44680 * 18 17 4 38 38 H 1.00894 * 111.00504 * 84.68624 * 19 18 17 39 39 H 1.08991 * 113.47758 * 141.77930 * 20 19 18 40 40 H 1.09006 * 113.47638 * 272.24994 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 0.0006 5 6 4.0353 2.7931 0.2388 6 6 3.8002 3.1818 1.6998 7 8 4.5480 2.3107 2.5507 8 6 4.3984 2.5898 3.9441 9 6 5.2254 1.6158 4.7432 10 1 5.8068 0.8590 4.2374 11 6 5.2399 1.6908 6.1198 12 7 4.5315 2.6120 6.7356 13 14 6.2655 0.4840 7.1102 14 1 6.9647 -0.4456 6.1871 15 1 7.2674 1.2291 7.9142 16 1 5.3804 -0.2905 8.0167 17 6 4.0359 0.8854 -1.2523 18 6 5.5639 0.9608 -1.3801 19 7 5.5276 -0.3899 -1.9712 20 6 4.2866 -0.6285 -1.2108 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6765 1.9564 0.8899 27 1 1.6767 1.9562 -0.8900 28 1 5.1041 2.8093 0.0258 29 1 3.5243 3.5023 -0.4126 30 1 4.1237 4.2106 1.8586 31 1 2.7391 3.0945 1.9328 32 1 4.7345 3.6062 4.1492 33 1 3.3496 2.4906 4.2239 34 1 4.5420 2.6651 7.7041 35 1 3.4969 1.2244 -2.1370 36 1 6.0784 1.0010 -0.4200 37 1 5.9052 1.7292 -2.0738 38 1 5.3419 -0.3463 -2.9619 39 1 3.5446 -1.2068 -1.7611 40 1 4.4604 -1.0124 -0.2055 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385270801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:14 Heat of formation + Delta-G solvation = -35.823005 kcal Electronic energy + Delta-G solvation = -18118.999789 eV Core-core repulsion = 15354.913650 eV Total energy + Delta-G solvation = -2764.086139 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11713 -38.71976 -37.19376 -34.95514 -34.04004 -30.67795 -28.85615 -27.78683 -26.73495 -25.33994 -24.44652 -22.77521 -21.86419 -20.93131 -18.61350 -17.58301 -17.41530 -17.38479 -16.55269 -16.18099 -15.99960 -15.56160 -15.09311 -14.68053 -14.29888 -13.97990 -13.76851 -13.58603 -13.42215 -13.25635 -12.99784 -12.78218 -12.69568 -12.57155 -12.50464 -12.14968 -11.80682 -11.70428 -11.52449 -11.32411 -11.21611 -10.84006 -10.15553 -9.67036 -9.15987 -8.31364 -6.42848 1.39517 1.40925 1.56078 2.35655 2.86894 3.02278 3.21006 3.27227 3.38512 3.91179 3.97735 4.10910 4.24993 4.31121 4.42523 4.47665 4.52798 4.58618 4.63186 4.67419 4.73327 4.81584 4.82874 4.89529 4.92354 4.97360 5.00152 5.17427 5.19652 5.22031 5.34562 5.43338 5.56874 5.98710 6.12619 6.21324 6.48088 6.58683 6.88441 7.29547 8.81333 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020862 B = 0.005594 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.818729 B = 5004.132541 C = 5344.806656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.056 3.944 4 N -0.536 5.536 5 C 0.069 3.931 6 C 0.058 3.942 7 O -0.392 6.392 8 C 0.210 3.790 9 C -0.542 4.542 10 H 0.058 0.942 11 C 0.006 3.994 12 N -0.932 5.932 13 Si 0.981 3.019 14 H -0.266 1.266 15 H -0.270 1.270 16 H -0.271 1.271 17 C 0.016 3.984 18 C 0.022 3.978 19 N -0.659 5.659 20 C 0.032 3.968 21 H 0.063 0.937 22 H 0.046 0.954 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.034 0.966 32 H -0.017 1.017 33 H -0.020 1.020 34 H 0.270 0.730 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.347 0.653 39 H 0.085 0.915 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.334 -2.444 -18.768 19.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.072 4.072 4 N -0.261 5.261 5 C -0.059 4.059 6 C -0.019 4.019 7 O -0.312 6.312 8 C 0.135 3.865 9 C -0.580 4.580 10 H 0.077 0.923 11 C -0.192 4.192 12 N -0.571 5.571 13 Si 0.804 3.196 14 H -0.190 1.190 15 H -0.195 1.195 16 H -0.196 1.196 17 C -0.094 4.094 18 C -0.109 4.109 19 N -0.287 5.287 20 C -0.098 4.098 21 H 0.082 0.918 22 H 0.065 0.935 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.001 0.999 33 H -0.002 1.002 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.163 0.837 39 H 0.103 0.897 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.443 -3.307 -17.957 18.792 hybrid contribution -0.929 1.144 0.083 1.476 sum -5.372 -2.163 -17.875 18.789 Atomic orbital electron populations 1.21707 0.94549 1.02280 1.01865 1.21507 0.96181 0.95742 1.02042 1.22218 0.86671 0.97954 1.00362 1.62091 1.08094 1.22308 1.33629 1.22030 1.01328 0.89408 0.93134 1.22593 0.94868 0.92973 0.91491 1.87902 1.69239 1.56850 1.17199 1.19764 0.94253 0.94607 0.77858 1.21395 1.28610 1.16208 0.91801 0.92348 1.25940 0.96937 0.97951 0.98375 1.70075 1.41926 1.35249 1.09880 0.85165 0.78228 0.78238 0.77966 1.19020 1.19486 1.19601 1.24801 0.96104 0.96971 0.91487 1.23595 0.94232 0.92205 1.00823 1.65551 1.33268 1.20589 1.09301 1.23593 0.91586 0.94902 0.99725 0.91786 0.93530 0.91639 0.90864 0.93577 0.92521 0.93457 0.89985 0.91235 0.93668 0.94741 0.99908 1.00233 0.92093 0.89347 0.90266 0.89526 0.83748 0.89655 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.91 71.98 0.71 -2.07 16 2 C -0.12 -2.71 5.52 30.59 0.17 -2.54 16 3 C 0.06 1.40 4.80 86.30 0.41 1.81 16 4 N -0.54 -15.28 4.42 -869.96 -3.84 -19.12 16 5 C 0.07 1.98 5.24 86.30 0.45 2.43 16 6 C 0.06 2.21 6.08 71.98 0.44 2.65 16 7 O -0.39 -19.88 10.26 -148.98 -1.53 -21.41 16 8 C 0.21 12.26 5.69 71.24 0.41 12.67 16 9 C -0.54 -33.48 9.43 25.60 0.24 -33.23 16 10 H 0.06 3.62 7.81 -2.91 -0.02 3.59 16 11 C 0.01 0.36 5.46 84.65 0.46 0.82 16 12 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 13 Si 0.98 45.72 29.54 68.60 2.03 47.75 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 C 0.02 0.36 3.15 45.37 0.14 0.50 16 18 C 0.02 0.51 6.86 83.58 0.57 1.08 16 19 N -0.66 -14.70 8.76 -541.94 -4.75 -19.45 16 20 C 0.03 0.75 6.88 83.58 0.57 1.32 16 21 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.47 5.66 -2.39 -0.01 1.45 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.66 6.34 -2.39 -0.02 1.64 16 27 H 0.05 0.98 8.05 -2.39 -0.02 0.96 16 28 H 0.08 2.37 6.30 -2.39 -0.02 2.36 16 29 H 0.07 1.57 8.05 -2.38 -0.02 1.55 16 30 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.03 1.31 6.47 -2.39 -0.02 1.29 16 32 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 33 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 34 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.09 1.56 8.03 -2.39 -0.02 1.55 16 36 H 0.08 2.42 7.72 -2.38 -0.02 2.41 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.35 5.65 8.85 -89.70 -0.79 4.85 16 39 H 0.09 1.56 7.29 -2.39 -0.02 1.54 16 40 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -69.44 318.78 -3.02 -72.45 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.21 Total: 11.31 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 4.59 Total: -14.56 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -8.31 Total: -95.54 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -1.53 Total: -21.41 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -69.44 -3.02 -72.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385270801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.628 kcal (2) G-P(sol) polarization free energy of solvation -69.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds