Wall clock time and date at job start Mon Mar 30 2020 04:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.72235 * 2 1 4 4 C 1.54939 * 110.66875 * 236.90233 * 2 1 3 5 5 C 1.54588 * 102.91894 * 204.15024 * 4 2 1 6 6 H 1.09001 * 110.31158 * 263.03455 * 5 4 2 7 7 C 1.53005 * 110.39264 * 140.91604 * 5 4 2 8 8 N 1.46901 * 109.47253 * 177.77876 * 7 5 4 9 9 C 1.53998 * 105.14319 * 21.95926 * 5 4 2 10 10 N 1.47896 * 107.05691 * 1.21933 * 9 5 4 11 11 C 1.46898 * 111.00460 * 214.15715 * 10 9 5 12 12 C 1.53002 * 109.47067 * 293.52291 * 11 10 9 13 13 O 1.42894 * 109.47257 * 66.08282 * 12 11 10 14 14 C 1.42901 * 113.99860 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47074 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00537 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99930 * 179.72711 * 15 14 13 18 18 N 1.31511 * 119.99854 * 0.27430 * 17 15 14 19 19 Si 1.86805 * 120.00030 * 180.27964 * 17 15 14 20 20 H 1.48496 * 109.47007 * 59.99917 * 19 17 15 21 21 H 1.48497 * 109.46965 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46882 * 299.99593 * 19 17 15 23 23 H 1.09000 * 109.47481 * 296.90527 * 1 2 3 24 24 H 1.09004 * 109.47327 * 56.91073 * 1 2 3 25 25 H 1.09003 * 109.47032 * 176.90470 * 1 2 3 26 26 H 1.09002 * 110.72421 * 85.79070 * 4 2 1 27 27 H 1.09004 * 110.87157 * 322.57597 * 4 2 1 28 28 H 1.09003 * 109.47178 * 297.78115 * 7 5 4 29 29 H 1.09002 * 109.46972 * 57.77897 * 7 5 4 30 30 H 1.00907 * 110.99837 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99786 * 303.95542 * 8 7 5 32 32 H 1.08999 * 109.91138 * 241.87188 * 9 5 4 33 33 H 1.08998 * 110.08015 * 120.67032 * 9 5 4 34 34 H 1.08996 * 109.47401 * 173.51883 * 11 10 9 35 35 H 1.09004 * 109.46883 * 53.51563 * 11 10 9 36 36 H 1.08995 * 109.46588 * 306.08047 * 12 11 10 37 37 H 1.08996 * 109.47018 * 186.08290 * 12 11 10 38 38 H 1.09004 * 109.46884 * 60.00322 * 14 13 12 39 39 H 1.09000 * 109.47156 * 299.99779 * 14 13 12 40 40 H 0.97002 * 119.99657 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0769 -0.7916 -1.2144 5 6 3.4852 -1.2196 -0.7422 6 1 4.2374 -0.5258 -1.1178 7 6 3.7954 -2.6426 -1.2114 8 7 5.1566 -3.0088 -0.7980 9 6 3.4278 -1.1647 0.7957 10 7 2.0542 -0.7588 1.1643 11 6 2.0579 0.0721 2.3758 12 6 2.5115 -0.7697 3.5702 13 8 3.8780 -1.1488 3.3942 14 6 4.4031 -1.9419 4.4607 15 6 5.8423 -2.2828 4.1716 16 1 6.3094 -1.9289 3.2645 17 6 6.5645 -3.0414 5.0683 18 7 5.9958 -3.4720 6.1731 19 14 8.3508 -3.4574 4.7137 20 1 9.1361 -2.2031 4.5907 21 1 8.8982 -4.2766 5.8248 22 1 8.4382 -4.2228 3.4442 23 1 -0.3634 0.4650 0.9164 24 1 -0.3634 0.5611 -0.8610 25 1 -0.3633 -1.0262 -0.0555 26 1 2.1430 -0.1513 -2.0941 27 1 1.4571 -1.6645 -1.4200 28 1 3.0816 -3.3357 -0.7661 29 1 3.7200 -2.6914 -2.2977 30 1 5.3857 -3.9450 -1.0968 31 1 5.8312 -2.3435 -1.1451 32 1 4.1440 -0.4321 1.1680 33 1 3.6498 -2.1465 1.2139 34 1 1.0526 0.4513 2.5594 35 1 2.7429 0.9091 2.2402 36 1 1.8924 -1.6640 3.6403 37 1 2.4114 -0.1858 4.4851 38 1 3.8233 -2.8606 4.5497 39 1 4.3423 -1.3819 5.3938 40 1 6.5041 -4.0054 6.8041 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385282806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:30 Heat of formation + Delta-G solvation = -53.692636 kcal Electronic energy + Delta-G solvation = -18358.565920 eV Core-core repulsion = 15593.704896 eV Total energy + Delta-G solvation = -2764.861024 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.24876 -36.56015 -34.82941 -32.77285 -31.85222 -30.66010 -28.16158 -26.57843 -25.44873 -23.85387 -22.18661 -21.38394 -20.25792 -19.44103 -16.38076 -16.25011 -15.68503 -15.34559 -14.98702 -14.33958 -14.25002 -14.04851 -13.91652 -13.62703 -13.07936 -12.61394 -12.35852 -12.08913 -11.98313 -11.60114 -11.38362 -11.06378 -10.91748 -10.78880 -10.64084 -10.61537 -10.51465 -10.33719 -10.23060 -9.83100 -8.98391 -8.69255 -8.40484 -8.04915 -7.98030 -6.00487 -4.00712 3.39110 3.41003 3.45684 4.27922 4.44168 4.57148 4.77379 4.93061 5.07449 5.12182 5.34728 5.36188 5.43618 5.49703 5.59487 5.62748 5.75963 5.79806 5.82045 5.92846 6.00439 6.12224 6.17735 6.19625 6.28234 6.36316 6.45691 6.60955 7.00617 7.23052 7.32448 7.41004 7.49391 7.56080 7.63433 7.90891 8.27415 8.70708 9.13050 9.63398 11.11289 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024011 B = 0.006466 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.844741 B = 4329.584580 C = 5294.300073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.047 0.953 4 C -0.112 4.112 5 C -0.103 4.103 6 H 0.065 0.935 7 C 0.077 3.923 8 N -0.842 5.842 9 C 0.066 3.934 10 N -0.512 5.512 11 C 0.053 3.947 12 C 0.065 3.935 13 O -0.390 6.390 14 C 0.197 3.803 15 C -0.506 4.506 16 H 0.066 0.934 17 C 0.055 3.945 18 N -0.902 5.902 19 Si 0.906 3.094 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.274 1.274 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.016 0.984 30 H 0.339 0.661 31 H 0.337 0.663 32 H 0.051 0.949 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.044 0.956 37 H 0.037 0.963 38 H 0.004 0.996 39 H 0.001 0.999 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.385 5.426 -14.592 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.053 4.053 3 H 0.065 0.935 4 C -0.150 4.150 5 C -0.122 4.122 6 H 0.084 0.916 7 C -0.054 4.054 8 N -0.372 5.372 9 C -0.061 4.061 10 N -0.237 5.237 11 C -0.076 4.076 12 C -0.013 4.013 13 O -0.310 6.310 14 C 0.123 3.877 15 C -0.544 4.544 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.541 5.541 19 Si 0.734 3.266 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.200 1.200 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.034 0.966 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.070 0.930 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.018 0.982 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.825 5.011 -13.704 17.053 hybrid contribution 1.490 0.329 -0.884 1.763 sum -7.335 5.340 -14.589 17.180 Atomic orbital electron populations 1.21662 0.94288 1.02209 1.00943 1.22737 0.95590 0.95662 0.91289 0.93538 1.22536 0.96004 0.99828 0.96666 1.22129 0.96362 0.96134 0.97620 0.91612 1.21795 0.91395 0.96431 0.95812 1.58558 1.03139 1.06845 1.68610 1.22791 0.87864 1.03890 0.91528 1.64819 1.20964 1.36077 1.01805 1.22286 0.99754 0.94572 0.90959 1.22216 0.86537 0.97410 0.95125 1.87895 1.22915 1.72556 1.47598 1.20139 0.94042 0.88886 0.84664 1.21011 0.95170 1.32031 1.06175 0.91568 1.24926 0.98921 0.95811 0.94866 1.69962 1.37024 1.36730 1.10414 0.86422 0.84045 0.78370 0.77772 1.20231 1.21364 1.19954 0.92839 0.92870 0.91930 0.91820 0.90763 0.90682 0.96581 0.84838 0.85080 0.93022 0.88001 0.90610 0.94490 0.93732 0.94483 0.97848 0.98164 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 9.50 37.16 0.35 -1.08 16 2 C 0.06 0.71 2.92 -65.79 -0.19 0.52 16 3 H 0.05 0.60 8.02 -51.93 -0.42 0.18 16 4 C -0.11 -1.30 6.05 -24.87 -0.15 -1.46 16 5 C -0.10 -1.41 3.18 -89.26 -0.28 -1.69 16 6 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 7 C 0.08 0.99 5.87 -3.82 -0.02 0.97 16 8 N -0.84 -11.66 9.32 -10.36 -0.10 -11.76 16 9 C 0.07 1.17 4.55 -2.76 -0.01 1.16 16 10 N -0.51 -8.21 4.98 -222.63 -1.11 -9.32 16 11 C 0.05 0.86 5.25 -3.82 -0.02 0.84 16 12 C 0.07 1.28 6.19 37.16 0.23 1.51 16 13 O -0.39 -9.53 7.49 -35.23 -0.26 -9.79 16 14 C 0.20 5.55 5.69 36.01 0.20 5.75 16 15 C -0.51 -15.15 9.43 -34.44 -0.32 -15.48 16 16 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 19 Si 0.91 22.38 29.54 -169.99 -5.02 17.36 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H 0.05 0.57 7.34 -51.93 -0.38 0.19 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.70 8.11 -51.93 -0.42 0.27 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.85 7.75 -51.93 -0.40 0.44 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.34 4.07 9.08 -39.29 -0.36 3.71 16 31 H 0.34 4.20 8.99 -39.29 -0.35 3.85 16 32 H 0.05 1.03 6.96 -51.93 -0.36 0.67 16 33 H 0.10 2.18 7.09 -51.93 -0.37 1.81 16 34 H 0.08 1.04 7.28 -51.93 -0.38 0.66 16 35 H 0.04 0.62 7.92 -51.93 -0.41 0.21 16 36 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.00 0.02 8.14 -51.93 -0.42 -0.41 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -31.75 317.96 -8.48 -40.23 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.20 Total: 2.79 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -0.31 Total: -7.42 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.47 Total: -47.96 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.26 Total: -9.79 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.75 -8.48 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385282806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.462 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds