Wall clock time and date at job start Mon Mar 30 2020 04:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.72235 * 2 1 4 4 C 1.54939 * 110.66875 * 236.90233 * 2 1 3 5 5 C 1.54588 * 102.91894 * 204.15024 * 4 2 1 6 6 H 1.09001 * 110.31158 * 263.03455 * 5 4 2 7 7 C 1.53005 * 110.39264 * 140.91604 * 5 4 2 8 8 N 1.46901 * 109.47253 * 177.77876 * 7 5 4 9 9 C 1.53998 * 105.14319 * 21.95926 * 5 4 2 10 10 N 1.47896 * 107.05691 * 1.21933 * 9 5 4 11 11 C 1.46898 * 111.00460 * 214.15715 * 10 9 5 12 12 C 1.53002 * 109.47067 * 293.52291 * 11 10 9 13 13 O 1.42894 * 109.47257 * 66.08282 * 12 11 10 14 14 C 1.42901 * 113.99860 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47074 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00537 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99930 * 179.72711 * 15 14 13 18 18 N 1.31511 * 119.99854 * 0.27430 * 17 15 14 19 19 Si 1.86805 * 120.00030 * 180.27964 * 17 15 14 20 20 H 1.48496 * 109.47007 * 59.99917 * 19 17 15 21 21 H 1.48497 * 109.46965 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46882 * 299.99593 * 19 17 15 23 23 H 1.09000 * 109.47481 * 296.90527 * 1 2 3 24 24 H 1.09004 * 109.47327 * 56.91073 * 1 2 3 25 25 H 1.09003 * 109.47032 * 176.90470 * 1 2 3 26 26 H 1.09002 * 110.72421 * 85.79070 * 4 2 1 27 27 H 1.09004 * 110.87157 * 322.57597 * 4 2 1 28 28 H 1.09003 * 109.47178 * 297.78115 * 7 5 4 29 29 H 1.09002 * 109.46972 * 57.77897 * 7 5 4 30 30 H 1.00907 * 110.99837 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99786 * 303.95542 * 8 7 5 32 32 H 1.08999 * 109.91138 * 241.87188 * 9 5 4 33 33 H 1.08998 * 110.08015 * 120.67032 * 9 5 4 34 34 H 1.08996 * 109.47401 * 173.51883 * 11 10 9 35 35 H 1.09004 * 109.46883 * 53.51563 * 11 10 9 36 36 H 1.08995 * 109.46588 * 306.08047 * 12 11 10 37 37 H 1.08996 * 109.47018 * 186.08290 * 12 11 10 38 38 H 1.09004 * 109.46884 * 60.00322 * 14 13 12 39 39 H 1.09000 * 109.47156 * 299.99779 * 14 13 12 40 40 H 0.97002 * 119.99657 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0769 -0.7916 -1.2144 5 6 3.4852 -1.2196 -0.7422 6 1 4.2374 -0.5258 -1.1178 7 6 3.7954 -2.6426 -1.2114 8 7 5.1566 -3.0088 -0.7980 9 6 3.4278 -1.1647 0.7957 10 7 2.0542 -0.7588 1.1643 11 6 2.0579 0.0721 2.3758 12 6 2.5115 -0.7697 3.5702 13 8 3.8780 -1.1488 3.3942 14 6 4.4031 -1.9419 4.4607 15 6 5.8423 -2.2828 4.1716 16 1 6.3094 -1.9289 3.2645 17 6 6.5645 -3.0414 5.0683 18 7 5.9958 -3.4720 6.1731 19 14 8.3508 -3.4574 4.7137 20 1 9.1361 -2.2031 4.5907 21 1 8.8982 -4.2766 5.8248 22 1 8.4382 -4.2228 3.4442 23 1 -0.3634 0.4650 0.9164 24 1 -0.3634 0.5611 -0.8610 25 1 -0.3633 -1.0262 -0.0555 26 1 2.1430 -0.1513 -2.0941 27 1 1.4571 -1.6645 -1.4200 28 1 3.0816 -3.3357 -0.7661 29 1 3.7200 -2.6914 -2.2977 30 1 5.3857 -3.9450 -1.0968 31 1 5.8312 -2.3435 -1.1451 32 1 4.1440 -0.4321 1.1680 33 1 3.6498 -2.1465 1.2139 34 1 1.0526 0.4513 2.5594 35 1 2.7429 0.9091 2.2402 36 1 1.8924 -1.6640 3.6403 37 1 2.4114 -0.1858 4.4851 38 1 3.8233 -2.8606 4.5497 39 1 4.3423 -1.3819 5.3938 40 1 6.5041 -4.0054 6.8041 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385282806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:30 Heat of formation + Delta-G solvation = -77.948031 kcal Electronic energy + Delta-G solvation = -18359.617713 eV Core-core repulsion = 15593.704896 eV Total energy + Delta-G solvation = -2765.912817 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.46347 -38.40521 -36.01435 -34.91394 -33.24668 -31.72295 -29.91286 -28.49043 -26.45118 -25.19808 -24.37254 -22.80020 -21.30091 -20.65084 -18.56006 -17.72307 -17.24659 -16.75064 -16.52507 -16.17291 -15.55074 -15.32749 -15.25150 -15.10117 -14.44730 -14.11411 -13.75530 -13.56590 -13.17568 -13.04076 -12.85396 -12.76041 -12.61311 -12.38012 -12.21502 -11.96423 -11.86053 -11.62008 -11.47117 -11.43030 -11.20141 -10.82371 -10.17101 -9.44550 -9.28862 -8.28766 -6.39907 1.39574 1.45329 1.53376 2.36919 3.05003 3.07412 3.24831 3.53927 3.73918 3.87047 4.04486 4.28474 4.31919 4.34577 4.46990 4.52199 4.57216 4.69057 4.71797 4.76499 4.78370 4.84601 4.92430 4.98486 5.04360 5.13202 5.17591 5.21074 5.41425 5.45596 5.54445 5.58768 6.00028 6.10064 6.23874 6.35978 6.57447 6.67146 6.86136 7.31291 8.83722 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024011 B = 0.006466 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.844741 B = 4329.584580 C = 5294.300073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.053 3.947 3 H 0.051 0.949 4 C -0.103 4.103 5 C -0.099 4.099 6 H 0.072 0.928 7 C 0.081 3.919 8 N -0.866 5.866 9 C 0.076 3.924 10 N -0.524 5.524 11 C 0.062 3.938 12 C 0.056 3.944 13 O -0.396 6.396 14 C 0.213 3.787 15 C -0.537 4.537 16 H 0.060 0.940 17 C 0.006 3.994 18 N -0.933 5.933 19 Si 0.982 3.018 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.266 1.266 23 H 0.053 0.947 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.348 0.652 31 H 0.344 0.656 32 H 0.018 0.982 33 H 0.055 0.945 34 H 0.109 0.891 35 H 0.033 0.967 36 H 0.038 0.962 37 H 0.046 0.954 38 H -0.022 1.022 39 H -0.019 1.019 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.500 6.118 -16.531 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.055 4.055 3 H 0.069 0.931 4 C -0.141 4.141 5 C -0.118 4.118 6 H 0.091 0.909 7 C -0.050 4.050 8 N -0.398 5.398 9 C -0.052 4.052 10 N -0.249 5.249 11 C -0.067 4.067 12 C -0.021 4.021 13 O -0.316 6.316 14 C 0.138 3.862 15 C -0.574 4.574 16 H 0.078 0.922 17 C -0.192 4.192 18 N -0.573 5.573 19 Si 0.805 3.195 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.190 1.190 23 H 0.072 0.928 24 H 0.097 0.903 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.065 0.935 38 H -0.004 1.004 39 H -0.001 1.001 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.967 5.716 -15.657 18.927 hybrid contribution 1.436 0.133 -0.251 1.464 sum -7.531 5.849 -15.908 18.547 Atomic orbital electron populations 1.21643 0.92344 1.02382 1.02199 1.22903 0.97016 0.95509 0.90045 0.93134 1.22548 0.94134 1.00355 0.97074 1.22104 0.98240 0.96982 0.94498 0.90930 1.21730 0.90529 0.95441 0.97260 1.58553 1.03924 1.07753 1.69527 1.22481 0.88109 1.00228 0.94343 1.64772 1.19875 1.37215 1.03071 1.22243 1.01205 0.93484 0.89719 1.22535 0.84028 0.97875 0.97702 1.87895 1.25644 1.71867 1.46217 1.19735 0.93638 0.87952 0.84879 1.21279 0.96212 1.33398 1.06538 0.92223 1.25941 1.04117 0.94929 0.94245 1.70076 1.39166 1.36831 1.11243 0.85254 0.77510 0.78614 0.78142 1.19072 1.20020 1.19049 0.92769 0.90313 0.92445 0.88961 0.90230 0.92310 0.93663 0.83901 0.84323 0.96308 0.92642 0.87263 0.94879 0.94402 0.93548 1.00442 1.00086 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 9.50 71.98 0.68 -1.66 16 2 C 0.05 1.23 2.92 45.26 0.13 1.36 16 3 H 0.05 1.16 8.02 -2.39 -0.02 1.14 16 4 C -0.10 -2.11 6.05 31.80 0.19 -1.92 16 5 C -0.10 -2.60 3.18 -9.91 -0.03 -2.63 16 6 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 7 C 0.08 2.03 5.87 86.30 0.51 2.54 16 8 N -0.87 -23.99 9.32 -186.70 -1.74 -25.73 16 9 C 0.08 2.76 4.55 86.45 0.39 3.16 16 10 N -0.52 -16.63 4.98 -858.27 -4.28 -20.90 16 11 C 0.06 1.98 5.25 86.30 0.45 2.44 16 12 C 0.06 2.27 6.19 71.98 0.45 2.71 16 13 O -0.40 -20.36 7.49 -148.98 -1.12 -21.47 16 14 C 0.21 12.62 5.69 71.24 0.41 13.03 16 15 C -0.54 -33.24 9.43 25.60 0.24 -33.00 16 16 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 17 C 0.01 0.34 5.46 84.66 0.46 0.80 16 18 N -0.93 -58.11 13.29 21.45 0.28 -57.82 16 19 Si 0.98 46.02 29.54 68.60 2.03 48.04 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 23 H 0.05 0.99 7.34 -2.39 -0.02 0.97 16 24 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.06 1.12 8.11 -2.39 -0.02 1.10 16 26 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.58 7.75 -2.38 -0.02 1.56 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.35 8.28 9.08 -89.69 -0.81 7.47 16 31 H 0.34 8.46 8.99 -89.69 -0.81 7.65 16 32 H 0.02 0.78 6.96 -2.39 -0.02 0.76 16 33 H 0.06 2.51 7.09 -2.39 -0.02 2.49 16 34 H 0.11 2.78 7.28 -2.39 -0.02 2.76 16 35 H 0.03 1.09 7.92 -2.38 -0.02 1.07 16 36 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H -0.02 -1.39 8.14 -2.38 -0.02 -1.41 16 39 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 40 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -70.73 317.96 -1.55 -72.27 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -0.61 Total: 18.79 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 3.88 Total: -13.17 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -5.73 Total: -104.46 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -1.12 Total: -21.47 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -70.73 -1.55 -72.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385282806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.674 kcal (2) G-P(sol) polarization free energy of solvation -70.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds