Wall clock time and date at job start Mon Mar 30 2020 04:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.36656 * 2 1 4 4 C 1.54385 * 110.50735 * 237.58525 * 2 1 3 5 5 C 1.54258 * 105.05599 * 217.31659 * 4 2 1 6 6 H 1.09007 * 110.32206 * 118.99934 * 5 4 2 7 7 C 1.53004 * 110.32531 * 241.10185 * 5 4 2 8 8 N 1.46896 * 109.47380 * 185.00478 * 7 5 4 9 9 C 1.54378 * 105.06502 * 0.02562 * 5 4 2 10 10 N 1.48554 * 104.59426 * 23.85028 * 9 5 4 11 11 C 1.46901 * 111.00208 * 200.96461 * 10 9 5 12 12 C 1.53000 * 109.46769 * 285.42169 * 11 10 9 13 13 O 1.42899 * 109.47405 * 64.99669 * 12 11 10 14 14 C 1.42901 * 113.99649 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46545 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00589 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99844 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99649 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00005 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47098 * 89.99698 * 19 17 15 21 21 H 1.48497 * 109.47124 * 210.00019 * 19 17 15 22 22 H 1.48503 * 109.46816 * 329.99950 * 19 17 15 23 23 H 1.09004 * 109.46711 * 297.64162 * 1 2 3 24 24 H 1.08999 * 109.47749 * 57.64982 * 1 2 3 25 25 H 1.09001 * 109.46995 * 177.64905 * 1 2 3 26 26 H 1.09002 * 110.32651 * 336.21026 * 4 2 1 27 27 H 1.08990 * 110.32610 * 98.42234 * 4 2 1 28 28 H 1.09008 * 109.46812 * 305.00594 * 7 5 4 29 29 H 1.09001 * 109.46679 * 64.99689 * 7 5 4 30 30 H 1.00900 * 110.99993 * 56.04488 * 8 7 5 31 31 H 1.00901 * 111.00087 * 180.02562 * 8 7 5 32 32 H 1.09002 * 110.40560 * 265.07483 * 9 5 4 33 33 H 1.08997 * 110.41571 * 142.63342 * 9 5 4 34 34 H 1.09002 * 109.47401 * 165.41877 * 11 10 9 35 35 H 1.09001 * 109.46874 * 45.41889 * 11 10 9 36 36 H 1.09002 * 109.46642 * 184.99944 * 12 11 10 37 37 H 1.09002 * 109.47069 * 304.99474 * 12 11 10 38 38 H 1.08990 * 109.47463 * 299.99806 * 14 13 12 39 39 H 1.08992 * 109.47069 * 60.00902 * 14 13 12 40 40 H 0.97004 * 119.99079 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0709 -0.7751 -1.2207 5 6 3.3209 -1.5162 -0.7031 6 1 3.1917 -2.5937 -0.8057 7 6 4.5651 -1.0560 -1.4654 8 7 5.7222 -1.8564 -1.0428 9 6 3.4298 -1.1270 0.7868 10 7 2.0477 -0.7459 1.1762 11 6 2.0535 0.1018 2.3759 12 6 2.3516 -0.7576 3.6061 13 8 3.6762 -1.2849 3.5093 14 6 4.0569 -2.1064 4.6149 15 6 5.4636 -2.6059 4.4084 16 1 6.0122 -2.3239 3.5219 17 6 6.0504 -3.4230 5.3514 18 7 7.2783 -3.8585 5.1714 19 14 5.1014 -3.9113 6.8845 20 1 4.3527 -5.1670 6.6241 21 1 6.0500 -4.1242 8.0070 22 1 4.1471 -2.8308 7.2410 23 1 -0.3633 0.4768 0.9104 24 1 -0.3634 0.5499 -0.8681 25 1 -0.3633 -1.0268 -0.0422 26 1 1.3275 -1.4889 -1.5757 27 1 2.3437 -0.0836 -2.0177 28 1 4.4044 -1.1865 -2.5356 29 1 4.7535 -0.0039 -1.2519 30 1 5.5464 -2.8417 -1.1708 31 1 6.5573 -1.5712 -1.5321 32 1 4.1064 -0.2814 0.9103 33 1 3.7705 -1.9771 1.3779 34 1 1.0785 0.5754 2.4909 35 1 2.8206 0.8696 2.2745 36 1 2.2685 -0.1465 4.5049 37 1 1.6365 -1.5787 3.6576 38 1 4.0094 -1.5230 5.5343 39 1 3.3774 -2.9554 4.6876 40 1 7.6909 -4.4336 5.8347 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385282808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:34 Heat of formation + Delta-G solvation = -49.134490 kcal Electronic energy + Delta-G solvation = -18276.727568 eV Core-core repulsion = 15512.064200 eV Total energy + Delta-G solvation = -2764.663368 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.29189 -36.76992 -34.88925 -32.73380 -31.94478 -30.70883 -28.57196 -27.07793 -25.42306 -23.90191 -21.76856 -21.46716 -20.15627 -19.77589 -16.78417 -16.13804 -15.64449 -15.43343 -15.17059 -14.57365 -14.38668 -14.11094 -14.05533 -13.53641 -13.17575 -12.56918 -12.38668 -12.28097 -12.18659 -11.81388 -11.54336 -11.27629 -11.04775 -10.78680 -10.70984 -10.60483 -10.58134 -10.26071 -10.24119 -9.78683 -9.07400 -8.73964 -8.47215 -8.36132 -8.11191 -6.03507 -4.01350 3.30091 3.36685 3.38813 4.21223 4.42497 4.55789 4.74432 4.78785 4.94500 5.13998 5.17649 5.27977 5.40604 5.43915 5.57127 5.63844 5.68749 5.73523 5.78872 5.80484 5.97398 6.05423 6.06986 6.08583 6.16312 6.28606 6.34867 6.54595 6.70685 6.91123 7.09659 7.25566 7.30155 7.41667 7.60019 7.69046 8.12500 8.76124 9.10740 9.56586 11.09534 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023895 B = 0.006294 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.488740 B = 4447.303893 C = 5405.713897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.053 3.947 3 H 0.046 0.954 4 C -0.113 4.113 5 C -0.096 4.096 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.844 5.844 9 C 0.063 3.937 10 N -0.506 5.506 11 C 0.050 3.950 12 C 0.063 3.937 13 O -0.374 6.374 14 C 0.169 3.831 15 C -0.513 4.513 16 H 0.084 0.916 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.874 3.126 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.267 1.267 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.019 0.981 29 H 0.067 0.933 30 H 0.342 0.658 31 H 0.338 0.662 32 H 0.045 0.955 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.046 0.954 38 H -0.001 1.001 39 H -0.003 1.003 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.579 7.216 -12.425 18.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.055 4.055 3 H 0.064 0.936 4 C -0.152 4.152 5 C -0.116 4.116 6 H 0.094 0.906 7 C -0.058 4.058 8 N -0.374 5.374 9 C -0.064 4.064 10 N -0.230 5.230 11 C -0.078 4.078 12 C -0.015 4.015 13 O -0.294 6.294 14 C 0.094 3.906 15 C -0.551 4.551 16 H 0.102 0.898 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.701 3.299 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.192 1.192 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.086 0.914 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.017 0.983 39 H 0.015 0.985 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.767 6.994 -11.622 17.957 hybrid contribution -0.035 0.061 0.013 0.072 sum -11.801 7.055 -11.609 17.995 Atomic orbital electron populations 1.21706 0.94341 1.02226 1.00911 1.22634 0.95644 0.95831 0.91441 0.93622 1.22373 0.97226 0.98851 0.96715 1.21994 0.93007 1.00323 0.96247 0.90643 1.21872 0.90623 0.98037 0.95237 1.58544 1.04930 1.08296 1.65584 1.23065 0.87787 1.02274 0.93237 1.65422 1.20077 1.35828 1.01703 1.22259 1.00178 0.94478 0.90893 1.22302 0.87335 0.96449 0.95395 1.87944 1.27992 1.67602 1.45815 1.20563 0.96387 0.88699 0.84976 1.20914 0.96454 1.29305 1.08386 0.89759 1.24758 0.94847 0.95558 0.97809 1.69890 1.13157 1.34745 1.35724 0.86885 0.80182 0.79484 0.83378 1.20012 1.20930 1.19204 0.92900 0.92842 0.91921 0.91167 0.91816 0.96249 0.91447 0.84529 0.84932 0.93648 0.87675 0.90524 0.94111 0.94335 0.93627 0.98314 0.98526 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 9.37 37.16 0.35 -1.06 16 2 C 0.05 0.66 2.87 -66.05 -0.19 0.47 16 3 H 0.05 0.57 8.00 -51.93 -0.42 0.15 16 4 C -0.11 -1.30 6.20 -25.35 -0.16 -1.45 16 5 C -0.10 -1.31 3.23 -89.24 -0.29 -1.60 16 6 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 7 C 0.07 0.91 5.90 -3.82 -0.02 0.89 16 8 N -0.84 -11.42 9.49 -10.37 -0.10 -11.52 16 9 C 0.06 1.10 4.76 -2.19 -0.01 1.09 16 10 N -0.51 -7.92 5.02 -222.12 -1.12 -9.04 16 11 C 0.05 0.79 5.34 -3.82 -0.02 0.77 16 12 C 0.06 1.17 6.26 37.16 0.23 1.40 16 13 O -0.37 -8.83 7.81 -35.23 -0.28 -9.11 16 14 C 0.17 4.40 4.76 36.01 0.17 4.57 16 15 C -0.51 -15.46 9.99 -34.44 -0.34 -15.81 16 16 H 0.08 2.79 8.06 -52.49 -0.42 2.37 16 17 C 0.07 2.14 5.47 -17.81 -0.10 2.04 16 18 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 19 Si 0.87 21.88 27.47 -169.99 -4.67 17.22 16 20 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 23 H 0.05 0.55 7.27 -51.93 -0.38 0.17 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 26 H 0.07 0.76 7.83 -51.93 -0.41 0.35 16 27 H 0.06 0.63 7.71 -51.93 -0.40 0.23 16 28 H 0.02 0.21 8.14 -51.92 -0.42 -0.22 16 29 H 0.07 0.86 7.98 -51.93 -0.41 0.45 16 30 H 0.34 4.33 8.99 -39.29 -0.35 3.98 16 31 H 0.34 3.87 9.08 -39.29 -0.36 3.51 16 32 H 0.05 0.85 7.36 -51.93 -0.38 0.47 16 33 H 0.11 2.26 6.83 -51.93 -0.35 1.90 16 34 H 0.08 0.99 7.15 -51.93 -0.37 0.62 16 35 H 0.04 0.66 7.77 -51.93 -0.40 0.26 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 39 H 0.00 -0.08 7.57 -51.93 -0.39 -0.47 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -32.13 314.54 -8.15 -40.28 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.13 Total: 3.39 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -0.38 Total: -8.69 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.44 Total: -47.82 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.28 Total: -9.11 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.13 -8.15 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385282808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.854 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds