Wall clock time and date at job start Mon Mar 30 2020 04:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.36656 * 2 1 4 4 C 1.54385 * 110.50735 * 237.58525 * 2 1 3 5 5 C 1.54258 * 105.05599 * 217.31659 * 4 2 1 6 6 H 1.09007 * 110.32206 * 118.99934 * 5 4 2 7 7 C 1.53004 * 110.32531 * 241.10185 * 5 4 2 8 8 N 1.46896 * 109.47380 * 185.00478 * 7 5 4 9 9 C 1.54378 * 105.06502 * 0.02562 * 5 4 2 10 10 N 1.48554 * 104.59426 * 23.85028 * 9 5 4 11 11 C 1.46901 * 111.00208 * 200.96461 * 10 9 5 12 12 C 1.53000 * 109.46769 * 285.42169 * 11 10 9 13 13 O 1.42899 * 109.47405 * 64.99669 * 12 11 10 14 14 C 1.42901 * 113.99649 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46545 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00589 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99844 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99649 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00005 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47098 * 89.99698 * 19 17 15 21 21 H 1.48497 * 109.47124 * 210.00019 * 19 17 15 22 22 H 1.48503 * 109.46816 * 329.99950 * 19 17 15 23 23 H 1.09004 * 109.46711 * 297.64162 * 1 2 3 24 24 H 1.08999 * 109.47749 * 57.64982 * 1 2 3 25 25 H 1.09001 * 109.46995 * 177.64905 * 1 2 3 26 26 H 1.09002 * 110.32651 * 336.21026 * 4 2 1 27 27 H 1.08990 * 110.32610 * 98.42234 * 4 2 1 28 28 H 1.09008 * 109.46812 * 305.00594 * 7 5 4 29 29 H 1.09001 * 109.46679 * 64.99689 * 7 5 4 30 30 H 1.00900 * 110.99993 * 56.04488 * 8 7 5 31 31 H 1.00901 * 111.00087 * 180.02562 * 8 7 5 32 32 H 1.09002 * 110.40560 * 265.07483 * 9 5 4 33 33 H 1.08997 * 110.41571 * 142.63342 * 9 5 4 34 34 H 1.09002 * 109.47401 * 165.41877 * 11 10 9 35 35 H 1.09001 * 109.46874 * 45.41889 * 11 10 9 36 36 H 1.09002 * 109.46642 * 184.99944 * 12 11 10 37 37 H 1.09002 * 109.47069 * 304.99474 * 12 11 10 38 38 H 1.08990 * 109.47463 * 299.99806 * 14 13 12 39 39 H 1.08992 * 109.47069 * 60.00902 * 14 13 12 40 40 H 0.97004 * 119.99079 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0709 -0.7751 -1.2207 5 6 3.3209 -1.5162 -0.7031 6 1 3.1917 -2.5937 -0.8057 7 6 4.5651 -1.0560 -1.4654 8 7 5.7222 -1.8564 -1.0428 9 6 3.4298 -1.1270 0.7868 10 7 2.0477 -0.7459 1.1762 11 6 2.0535 0.1018 2.3759 12 6 2.3516 -0.7576 3.6061 13 8 3.6762 -1.2849 3.5093 14 6 4.0569 -2.1064 4.6149 15 6 5.4636 -2.6059 4.4084 16 1 6.0122 -2.3239 3.5219 17 6 6.0504 -3.4230 5.3514 18 7 7.2783 -3.8585 5.1714 19 14 5.1014 -3.9113 6.8845 20 1 4.3527 -5.1670 6.6241 21 1 6.0500 -4.1242 8.0070 22 1 4.1471 -2.8308 7.2410 23 1 -0.3633 0.4768 0.9104 24 1 -0.3634 0.5499 -0.8681 25 1 -0.3633 -1.0268 -0.0422 26 1 1.3275 -1.4889 -1.5757 27 1 2.3437 -0.0836 -2.0177 28 1 4.4044 -1.1865 -2.5356 29 1 4.7535 -0.0039 -1.2519 30 1 5.5464 -2.8417 -1.1708 31 1 6.5573 -1.5712 -1.5321 32 1 4.1064 -0.2814 0.9103 33 1 3.7705 -1.9771 1.3779 34 1 1.0785 0.5754 2.4909 35 1 2.8206 0.8696 2.2745 36 1 2.2685 -0.1465 4.5049 37 1 1.6365 -1.5787 3.6576 38 1 4.0094 -1.5230 5.5343 39 1 3.3774 -2.9554 4.6876 40 1 7.6909 -4.4336 5.8347 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385282808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:33 Heat of formation + Delta-G solvation = -74.688332 kcal Electronic energy + Delta-G solvation = -18277.835666 eV Core-core repulsion = 15512.064200 eV Total energy + Delta-G solvation = -2765.771466 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.46681 -38.49798 -36.04055 -34.86719 -33.30939 -31.76073 -30.40197 -28.75072 -26.40369 -25.15674 -23.91353 -22.76315 -21.35241 -20.82979 -19.02016 -17.51019 -17.25288 -16.71033 -16.56249 -16.20490 -15.72339 -15.56515 -15.17264 -14.99614 -14.62120 -14.23169 -13.94314 -13.66587 -13.18165 -13.12243 -12.89643 -12.78831 -12.62038 -12.34843 -12.02656 -11.91999 -11.81066 -11.76864 -11.53287 -11.34875 -11.26678 -10.89560 -10.27994 -9.52273 -9.36041 -8.34593 -6.41406 1.32616 1.35698 1.46449 2.30304 2.97531 3.04485 3.14910 3.52950 3.71098 3.89195 4.05244 4.19239 4.29999 4.34149 4.45360 4.52534 4.52858 4.61009 4.64733 4.69186 4.75379 4.78893 4.87331 4.90860 4.98973 5.04425 5.15106 5.17159 5.36072 5.43335 5.45019 5.51068 5.97435 6.02892 6.19355 6.31162 6.61869 6.62586 6.79528 7.22481 8.82578 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023895 B = 0.006294 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.488740 B = 4447.303893 C = 5405.713897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.050 3.950 3 H 0.049 0.951 4 C -0.105 4.105 5 C -0.093 4.093 6 H 0.067 0.933 7 C 0.078 3.922 8 N -0.869 5.869 9 C 0.073 3.927 10 N -0.516 5.516 11 C 0.055 3.945 12 C 0.054 3.946 13 O -0.396 6.396 14 C 0.181 3.819 15 C -0.537 4.537 16 H 0.029 0.971 17 C 0.014 3.986 18 N -0.942 5.942 19 Si 0.954 3.046 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.248 1.248 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.344 0.656 31 H 0.348 0.652 32 H 0.020 0.980 33 H 0.052 0.948 34 H 0.113 0.887 35 H 0.031 0.969 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.008 0.992 39 H 0.005 0.995 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.338 7.885 -12.388 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.058 4.058 3 H 0.068 0.932 4 C -0.143 4.143 5 C -0.113 4.113 6 H 0.086 0.914 7 C -0.053 4.053 8 N -0.401 5.401 9 C -0.055 4.055 10 N -0.241 5.241 11 C -0.073 4.073 12 C -0.023 4.023 13 O -0.316 6.316 14 C 0.105 3.895 15 C -0.575 4.575 16 H 0.048 0.952 17 C -0.184 4.184 18 N -0.581 5.581 19 Si 0.775 3.225 20 H -0.186 1.186 21 H -0.197 1.197 22 H -0.171 1.171 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.157 0.843 31 H 0.162 0.838 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.026 0.974 39 H 0.022 0.978 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.540 7.685 -11.612 20.132 hybrid contribution 0.876 -0.111 -0.083 0.887 sum -13.664 7.573 -11.695 19.515 Atomic orbital electron populations 1.21681 0.92294 1.02367 1.02248 1.22789 0.97138 0.95657 0.90168 0.93245 1.22379 0.95955 0.99144 0.96841 1.21962 0.95087 1.00252 0.93966 0.91430 1.21848 0.89548 0.97375 0.96531 1.58554 1.06123 1.08790 1.66631 1.22738 0.88456 0.99195 0.95150 1.65386 1.18621 1.37009 1.03101 1.22281 1.01635 0.93594 0.89823 1.22649 0.84774 0.97089 0.97818 1.87945 1.31078 1.67485 1.45054 1.20256 0.93931 0.89350 0.85955 1.21115 0.98655 1.30624 1.07104 0.95239 1.25807 0.95880 0.94903 1.01834 1.70047 1.15219 1.35378 1.37477 0.85637 0.78976 0.79909 0.77975 1.18562 1.19721 1.17132 0.92597 0.90413 0.92453 0.89973 0.89498 0.93372 0.91923 0.84285 0.83805 0.96171 0.92926 0.86948 0.95093 0.92593 0.93283 0.97401 0.97775 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 9.37 71.98 0.67 -1.58 16 2 C 0.05 1.14 2.87 45.06 0.13 1.27 16 3 H 0.05 1.11 8.00 -2.39 -0.02 1.09 16 4 C -0.10 -2.15 6.20 31.49 0.20 -1.96 16 5 C -0.09 -2.53 3.23 -9.90 -0.03 -2.56 16 6 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 7 C 0.08 1.90 5.90 86.31 0.51 2.41 16 8 N -0.87 -24.52 9.49 -186.71 -1.77 -26.29 16 9 C 0.07 2.62 4.76 86.45 0.41 3.03 16 10 N -0.52 -15.89 5.02 -856.65 -4.30 -20.19 16 11 C 0.06 1.66 5.34 86.30 0.46 2.12 16 12 C 0.05 1.95 6.26 71.98 0.45 2.41 16 13 O -0.40 -19.27 7.81 -148.98 -1.16 -20.44 16 14 C 0.18 9.52 4.76 71.24 0.34 9.86 16 15 C -0.54 -33.87 9.99 25.60 0.26 -33.62 16 16 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 17 C 0.01 0.82 5.47 84.66 0.46 1.28 16 18 N -0.94 -60.69 13.96 21.45 0.30 -60.39 16 19 Si 0.95 44.86 27.47 68.60 1.88 46.74 16 20 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 23 H 0.05 0.95 7.27 -2.39 -0.02 0.93 16 24 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.06 1.08 8.09 -2.39 -0.02 1.06 16 26 H 0.08 1.53 7.83 -2.39 -0.02 1.51 16 27 H 0.09 1.42 7.71 -2.39 -0.02 1.40 16 28 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.06 1.59 7.98 -2.39 -0.02 1.57 16 30 H 0.34 9.19 8.99 -89.69 -0.81 8.38 16 31 H 0.35 8.24 9.08 -89.69 -0.81 7.42 16 32 H 0.02 0.80 7.36 -2.39 -0.02 0.79 16 33 H 0.05 2.44 6.83 -2.39 -0.02 2.43 16 34 H 0.11 2.58 7.15 -2.39 -0.02 2.57 16 35 H 0.03 0.99 7.77 -2.39 -0.02 0.97 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.01 0.42 7.20 -2.39 -0.02 0.40 16 39 H 0.00 0.23 7.57 -2.39 -0.02 0.21 16 40 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -73.28 314.54 -1.86 -75.14 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -0.66 Total: 22.76 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 3.86 Total: -17.34 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -5.77 Total: -106.87 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -1.16 Total: -20.44 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -73.28 -1.86 -75.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385282808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.453 kcal (2) G-P(sol) polarization free energy of solvation -73.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds