Wall clock time and date at job start Mon Mar 30 2020 04:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.41940 * 2 1 4 4 C 1.54903 * 110.37390 * 122.30816 * 2 1 3 5 5 C 1.55147 * 101.65347 * 155.90672 * 4 2 1 6 6 H 1.08992 * 110.70561 * 82.73220 * 5 4 2 7 7 C 1.53000 * 110.70649 * 205.96812 * 5 4 2 8 8 N 1.46893 * 109.47428 * 184.99737 * 7 5 4 9 9 C 1.54317 * 103.01425 * 324.34650 * 5 4 2 10 10 N 1.47439 * 107.23945 * 22.28628 * 9 5 4 11 11 C 1.46893 * 111.00185 * 123.25228 * 10 9 5 12 12 C 1.52999 * 109.47072 * 69.16557 * 11 10 9 13 13 O 1.42890 * 109.47602 * 64.99632 * 12 11 10 14 14 C 1.42903 * 114.00425 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47142 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00124 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99769 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00063 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 120.00062 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46973 * 90.00208 * 19 17 15 21 21 H 1.48500 * 109.46873 * 210.00572 * 19 17 15 22 22 H 1.48501 * 109.46866 * 330.00159 * 19 17 15 23 23 H 1.08998 * 109.47717 * 299.13795 * 1 2 3 24 24 H 1.08998 * 109.47297 * 59.14742 * 1 2 3 25 25 H 1.09001 * 109.46451 * 179.13733 * 1 2 3 26 26 H 1.09005 * 110.99187 * 37.81454 * 4 2 1 27 27 H 1.09001 * 111.02949 * 274.01030 * 4 2 1 28 28 H 1.09004 * 109.46948 * 305.00031 * 7 5 4 29 29 H 1.09007 * 109.47348 * 64.99083 * 7 5 4 30 30 H 1.00899 * 111.00312 * 180.02562 * 8 7 5 31 31 H 1.00910 * 110.99966 * 303.95672 * 8 7 5 32 32 H 1.09000 * 109.88876 * 141.69134 * 9 5 4 33 33 H 1.08999 * 109.88953 * 262.87804 * 9 5 4 34 34 H 1.09006 * 109.47134 * 189.15693 * 11 10 9 35 35 H 1.09002 * 109.47366 * 309.15986 * 11 10 9 36 36 H 1.09007 * 109.47215 * 185.00258 * 12 11 10 37 37 H 1.09003 * 109.46551 * 304.99217 * 12 11 10 38 38 H 1.08994 * 109.46928 * 300.00250 * 14 13 12 39 39 H 1.08999 * 109.46906 * 60.00183 * 14 13 12 40 40 H 0.97003 * 119.99773 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0693 -0.7761 1.2273 5 6 3.4787 -1.1993 0.7359 6 1 4.1941 -0.3886 0.8731 7 6 3.9466 -2.4638 1.4591 8 7 5.3272 -2.7720 1.0630 9 6 3.2536 -1.4806 -0.7646 10 7 2.0448 -0.7408 -1.1713 11 6 2.3358 0.1717 -2.2850 12 6 2.6246 -0.6414 -3.5485 13 8 1.4468 -1.3503 -3.9384 14 6 1.6096 -2.1460 -5.1142 15 6 0.3126 -2.8444 -5.4317 16 1 -0.5497 -2.6959 -4.7987 17 6 0.2271 -3.6739 -6.5297 18 7 -0.9049 -4.2831 -6.8072 19 14 1.7189 -3.9314 -7.6242 20 1 2.5066 -5.0865 -7.1237 21 1 1.2722 -4.2018 -9.0143 22 1 2.5639 -2.7103 -7.6045 23 1 -0.3634 0.5004 0.8976 24 1 -0.3634 0.5270 -0.8822 25 1 -0.3632 -1.0276 -0.0155 26 1 1.4515 -1.6487 1.4398 27 1 2.1387 -0.1275 2.1006 28 1 3.9050 -2.3028 2.5363 29 1 3.2971 -3.2972 1.1910 30 1 5.6595 -3.6040 1.5272 31 1 5.4044 -2.8621 0.0609 32 1 4.1119 -1.1332 -1.3398 33 1 3.1057 -2.5487 -0.9236 34 1 1.4762 0.8192 -2.4584 35 1 3.2055 0.7807 -2.0381 36 1 2.9271 0.0304 -4.3518 37 1 3.4266 -1.3519 -3.3478 38 1 1.8912 -1.5057 -5.9501 39 1 2.3903 -2.8877 -4.9456 40 1 -0.9651 -4.8663 -7.5799 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385282810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:37 Heat of formation + Delta-G solvation = -49.950531 kcal Electronic energy + Delta-G solvation = -18006.862185 eV Core-core repulsion = 15242.163431 eV Total energy + Delta-G solvation = -2764.698754 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.53443 -36.79956 -35.10918 -32.82078 -32.10846 -30.78340 -28.63027 -27.03930 -25.63318 -24.42949 -21.81312 -21.52313 -20.53708 -19.47535 -16.80794 -16.76602 -16.16563 -15.58676 -15.07144 -14.59800 -14.52462 -14.20782 -13.80036 -13.46296 -13.33729 -12.94130 -12.72592 -12.37128 -12.13322 -12.06907 -11.71160 -11.45590 -11.10091 -10.86522 -10.83356 -10.71107 -10.67166 -10.56058 -10.29986 -9.82090 -9.11456 -8.92475 -8.77245 -8.38800 -8.06283 -6.07086 -4.05107 3.26681 3.33477 3.35338 4.01329 4.26283 4.38989 4.54247 4.60418 4.76289 4.90452 5.16882 5.24248 5.25425 5.37228 5.40898 5.48469 5.56205 5.60089 5.62625 5.78728 5.85923 5.87665 5.92356 5.94263 6.01226 6.16435 6.20868 6.31029 6.48753 6.66140 6.89239 7.05768 7.19239 7.21370 7.30007 7.65766 8.11879 8.74789 9.06536 9.52973 11.06168 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025006 B = 0.005262 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.460284 B = 5319.693592 C = 5789.066663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.069 3.931 3 H 0.049 0.951 4 C -0.118 4.118 5 C -0.110 4.110 6 H 0.080 0.920 7 C 0.072 3.928 8 N -0.854 5.854 9 C 0.047 3.953 10 N -0.509 5.509 11 C 0.057 3.943 12 C 0.064 3.936 13 O -0.363 6.363 14 C 0.168 3.832 15 C -0.514 4.514 16 H 0.083 0.917 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.875 3.125 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.267 1.267 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.340 0.660 31 H 0.342 0.658 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.035 0.965 38 H -0.001 1.001 39 H -0.005 1.005 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.402 7.293 15.734 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.157 4.157 5 C -0.130 4.130 6 H 0.099 0.901 7 C -0.059 4.059 8 N -0.383 5.383 9 C -0.081 4.081 10 N -0.234 5.234 11 C -0.071 4.071 12 C -0.014 4.014 13 O -0.282 6.282 14 C 0.092 3.908 15 C -0.552 4.552 16 H 0.101 0.899 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.702 3.298 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.192 1.192 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.017 0.983 39 H 0.013 0.987 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.926 7.538 15.829 20.147 hybrid contribution 1.265 -0.592 -1.046 1.745 sum 11.191 6.945 14.783 19.799 Atomic orbital electron populations 1.21677 0.93709 1.02877 1.00932 1.22533 0.96441 0.95498 0.89398 0.93270 1.22781 0.95299 1.00438 0.97179 1.22458 0.96932 0.98008 0.95556 0.90136 1.21757 0.88579 0.95996 0.99579 1.58779 1.22360 1.44030 1.13151 1.22924 0.91567 1.00028 0.93556 1.63459 1.28211 1.25883 1.05799 1.22283 1.00049 0.93946 0.90859 1.22321 0.89961 0.94633 0.94482 1.88010 1.31508 1.62550 1.46145 1.20571 0.97913 0.89356 0.82916 1.20904 0.96738 1.25983 1.11529 0.89922 1.24766 0.95984 0.95225 0.97035 1.69881 1.25108 1.30403 1.28206 0.86864 0.83494 0.79070 0.80376 1.20026 1.20826 1.19180 0.92962 0.92370 0.91622 0.90397 0.91075 0.91148 0.94868 0.84796 0.84541 0.92885 0.90757 0.90085 0.94237 0.94311 0.94658 0.98306 0.98723 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.59 37.16 0.36 -1.33 16 2 C 0.07 0.86 3.02 -66.19 -0.20 0.66 16 3 H 0.05 0.57 7.81 -51.93 -0.41 0.17 16 4 C -0.12 -1.24 5.94 -24.59 -0.15 -1.39 16 5 C -0.11 -1.17 3.17 -88.79 -0.28 -1.45 16 6 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 7 C 0.07 0.70 6.18 -3.83 -0.02 0.67 16 8 N -0.85 -7.85 9.62 -10.37 -0.10 -7.95 16 9 C 0.05 0.62 5.11 -2.84 -0.01 0.61 16 10 N -0.51 -7.70 4.77 -223.39 -1.06 -8.77 16 11 C 0.06 0.86 4.92 -3.83 -0.02 0.84 16 12 C 0.06 1.17 6.03 37.16 0.22 1.39 16 13 O -0.36 -8.77 10.27 -35.23 -0.36 -9.13 16 14 C 0.17 4.40 4.76 36.01 0.17 4.57 16 15 C -0.51 -15.65 9.99 -34.44 -0.34 -15.99 16 16 H 0.08 2.76 8.06 -52.49 -0.42 2.34 16 17 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 18 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 19 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.08 0.85 7.96 -51.93 -0.41 0.44 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.03 0.34 7.94 -51.93 -0.41 -0.07 16 30 H 0.34 2.55 9.08 -39.29 -0.36 2.20 16 31 H 0.34 3.14 8.42 -39.29 -0.33 2.81 16 32 H 0.05 0.68 6.91 -51.93 -0.36 0.32 16 33 H 0.07 1.08 7.68 -51.93 -0.40 0.68 16 34 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 35 H 0.04 0.50 7.98 -51.93 -0.41 0.09 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.04 0.62 6.99 -51.93 -0.36 0.25 16 38 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 39 H 0.00 -0.12 7.57 -51.93 -0.39 -0.52 16 40 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 317.99 15.07 4.79 4.79 Total: -1.00 -32.65 317.99 -8.19 -40.85 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.19 Total: -0.16 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.37 Total: -9.38 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -0.39 Total: -44.08 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.36 Total: -9.13 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.65 -8.19 -40.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385282810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.104 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds