Wall clock time and date at job start Mon Mar 30 2020 04:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.41940 * 2 1 4 4 C 1.54903 * 110.37390 * 122.30816 * 2 1 3 5 5 C 1.55147 * 101.65347 * 155.90672 * 4 2 1 6 6 H 1.08992 * 110.70561 * 82.73220 * 5 4 2 7 7 C 1.53000 * 110.70649 * 205.96812 * 5 4 2 8 8 N 1.46893 * 109.47428 * 184.99737 * 7 5 4 9 9 C 1.54317 * 103.01425 * 324.34650 * 5 4 2 10 10 N 1.47439 * 107.23945 * 22.28628 * 9 5 4 11 11 C 1.46893 * 111.00185 * 123.25228 * 10 9 5 12 12 C 1.52999 * 109.47072 * 69.16557 * 11 10 9 13 13 O 1.42890 * 109.47602 * 64.99632 * 12 11 10 14 14 C 1.42903 * 114.00425 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47142 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00124 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99769 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00063 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 120.00062 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46973 * 90.00208 * 19 17 15 21 21 H 1.48500 * 109.46873 * 210.00572 * 19 17 15 22 22 H 1.48501 * 109.46866 * 330.00159 * 19 17 15 23 23 H 1.08998 * 109.47717 * 299.13795 * 1 2 3 24 24 H 1.08998 * 109.47297 * 59.14742 * 1 2 3 25 25 H 1.09001 * 109.46451 * 179.13733 * 1 2 3 26 26 H 1.09005 * 110.99187 * 37.81454 * 4 2 1 27 27 H 1.09001 * 111.02949 * 274.01030 * 4 2 1 28 28 H 1.09004 * 109.46948 * 305.00031 * 7 5 4 29 29 H 1.09007 * 109.47348 * 64.99083 * 7 5 4 30 30 H 1.00899 * 111.00312 * 180.02562 * 8 7 5 31 31 H 1.00910 * 110.99966 * 303.95672 * 8 7 5 32 32 H 1.09000 * 109.88876 * 141.69134 * 9 5 4 33 33 H 1.08999 * 109.88953 * 262.87804 * 9 5 4 34 34 H 1.09006 * 109.47134 * 189.15693 * 11 10 9 35 35 H 1.09002 * 109.47366 * 309.15986 * 11 10 9 36 36 H 1.09007 * 109.47215 * 185.00258 * 12 11 10 37 37 H 1.09003 * 109.46551 * 304.99217 * 12 11 10 38 38 H 1.08994 * 109.46928 * 300.00250 * 14 13 12 39 39 H 1.08999 * 109.46906 * 60.00183 * 14 13 12 40 40 H 0.97003 * 119.99773 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0693 -0.7761 1.2273 5 6 3.4787 -1.1993 0.7359 6 1 4.1941 -0.3886 0.8731 7 6 3.9466 -2.4638 1.4591 8 7 5.3272 -2.7720 1.0630 9 6 3.2536 -1.4806 -0.7646 10 7 2.0448 -0.7408 -1.1713 11 6 2.3358 0.1717 -2.2850 12 6 2.6246 -0.6414 -3.5485 13 8 1.4468 -1.3503 -3.9384 14 6 1.6096 -2.1460 -5.1142 15 6 0.3126 -2.8444 -5.4317 16 1 -0.5497 -2.6959 -4.7987 17 6 0.2271 -3.6739 -6.5297 18 7 -0.9049 -4.2831 -6.8072 19 14 1.7189 -3.9314 -7.6242 20 1 2.5066 -5.0865 -7.1237 21 1 1.2722 -4.2018 -9.0143 22 1 2.5639 -2.7103 -7.6045 23 1 -0.3634 0.5004 0.8976 24 1 -0.3634 0.5270 -0.8822 25 1 -0.3632 -1.0276 -0.0155 26 1 1.4515 -1.6487 1.4398 27 1 2.1387 -0.1275 2.1006 28 1 3.9050 -2.3028 2.5363 29 1 3.2971 -3.2972 1.1910 30 1 5.6595 -3.6040 1.5272 31 1 5.4044 -2.8621 0.0609 32 1 4.1119 -1.1332 -1.3398 33 1 3.1057 -2.5487 -0.9236 34 1 1.4762 0.8192 -2.4584 35 1 3.2055 0.7807 -2.0381 36 1 2.9271 0.0304 -4.3518 37 1 3.4266 -1.3519 -3.3478 38 1 1.8912 -1.5057 -5.9501 39 1 2.3903 -2.8877 -4.9456 40 1 -0.9651 -4.8663 -7.5799 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385282810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:37 Heat of formation + Delta-G solvation = -75.775981 kcal Electronic energy + Delta-G solvation = -18007.982060 eV Core-core repulsion = 15242.163431 eV Total energy + Delta-G solvation = -2765.818630 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.55416 -38.50580 -36.03031 -34.89867 -33.43851 -31.70359 -30.42298 -28.62673 -26.60513 -25.39990 -23.96364 -22.74512 -21.47295 -20.48476 -19.02773 -17.81790 -17.44691 -16.97274 -16.39999 -16.25681 -15.73235 -15.42789 -15.08380 -14.72774 -14.56494 -14.25478 -14.01407 -13.84146 -13.49098 -13.18019 -12.95933 -12.82219 -12.80950 -12.45436 -12.01982 -11.91728 -11.79698 -11.67677 -11.57659 -11.48392 -11.30294 -10.92402 -10.29974 -9.65553 -9.13582 -8.37433 -6.44995 1.31469 1.35015 1.46016 2.28756 2.94777 2.95737 3.14139 3.47124 3.67768 3.75587 4.02426 4.22099 4.26610 4.27698 4.40982 4.44731 4.49327 4.53146 4.58731 4.61588 4.72630 4.77774 4.85049 4.90392 4.94786 4.98863 5.05751 5.09713 5.14409 5.38981 5.43819 5.44492 5.94356 6.12627 6.23118 6.23577 6.54189 6.59292 6.81202 7.19795 8.80047 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025006 B = 0.005262 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.460284 B = 5319.693592 C = 5789.066663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.067 3.933 3 H 0.064 0.936 4 C -0.112 4.112 5 C -0.098 4.098 6 H 0.087 0.913 7 C 0.075 3.925 8 N -0.857 5.857 9 C 0.049 3.951 10 N -0.543 5.543 11 C 0.063 3.937 12 C 0.055 3.945 13 O -0.392 6.392 14 C 0.180 3.820 15 C -0.543 4.543 16 H 0.027 0.973 17 C 0.013 3.987 18 N -0.943 5.943 19 Si 0.957 3.043 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.246 1.246 23 H 0.079 0.921 24 H 0.039 0.961 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.022 0.978 30 H 0.349 0.651 31 H 0.341 0.659 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.010 0.990 39 H 0.005 0.995 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.136 8.146 16.146 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.040 4.040 3 H 0.082 0.918 4 C -0.150 4.150 5 C -0.118 4.118 6 H 0.105 0.895 7 C -0.056 4.056 8 N -0.387 5.387 9 C -0.079 4.079 10 N -0.268 5.268 11 C -0.065 4.065 12 C -0.022 4.022 13 O -0.312 6.312 14 C 0.104 3.896 15 C -0.581 4.581 16 H 0.045 0.955 17 C -0.185 4.185 18 N -0.583 5.583 19 Si 0.778 3.222 20 H -0.184 1.184 21 H -0.196 1.196 22 H -0.170 1.170 23 H 0.098 0.902 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.040 0.960 30 H 0.162 0.838 31 H 0.154 0.846 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.027 0.973 39 H 0.023 0.977 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.665 8.403 16.272 22.266 hybrid contribution 0.312 -0.842 -1.100 1.421 sum 12.977 7.561 15.172 21.348 Atomic orbital electron populations 1.21667 0.94429 1.01423 1.01435 1.22609 0.95868 0.96296 0.89264 0.91773 1.22760 0.94780 1.00330 0.97148 1.22366 0.97121 0.98560 0.93719 0.89487 1.21713 0.88620 0.95153 1.00112 1.58800 1.21909 1.44703 1.13248 1.22862 0.91004 0.98495 0.95529 1.63368 1.29544 1.26909 1.07000 1.22216 1.01021 0.93548 0.89738 1.22686 0.88199 0.94904 0.96391 1.87967 1.34888 1.62973 1.45336 1.20270 0.95458 0.89697 0.84163 1.21155 0.97250 1.27907 1.11749 0.95461 1.25850 1.00016 0.94130 0.98506 1.70040 1.28018 1.31025 1.29194 0.85597 0.78674 0.80147 0.77830 1.18442 1.19646 1.16966 0.90215 0.94163 0.93926 0.91235 0.88542 0.89916 0.96010 0.83753 0.84641 0.92358 0.92995 0.90945 0.91000 0.92664 0.93794 0.97260 0.97709 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.59 71.98 0.69 -2.61 16 2 C 0.07 1.58 3.02 45.38 0.14 1.71 16 3 H 0.06 1.33 7.81 -2.38 -0.02 1.31 16 4 C -0.11 -2.12 5.94 31.98 0.19 -1.93 16 5 C -0.10 -1.89 3.17 -9.61 -0.03 -1.92 16 6 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 7 C 0.08 1.33 6.18 86.30 0.53 1.86 16 8 N -0.86 -14.25 9.62 -186.72 -1.80 -16.05 16 9 C 0.05 1.24 5.11 86.65 0.44 1.68 16 10 N -0.54 -16.10 4.77 -860.67 -4.10 -20.20 16 11 C 0.06 1.82 4.92 86.30 0.42 2.25 16 12 C 0.06 1.95 6.03 71.98 0.43 2.38 16 13 O -0.39 -19.16 10.27 -148.98 -1.53 -20.69 16 14 C 0.18 9.40 4.76 71.24 0.34 9.74 16 15 C -0.54 -34.23 9.99 25.60 0.26 -33.98 16 16 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 17 C 0.01 0.77 5.47 84.65 0.46 1.23 16 18 N -0.94 -60.61 13.96 21.45 0.30 -60.31 16 19 Si 0.96 44.28 27.47 68.60 1.88 46.17 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 23 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.07 1.44 7.96 -2.38 -0.02 1.42 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.02 0.43 7.94 -2.38 -0.02 0.41 16 30 H 0.35 4.67 9.08 -89.69 -0.81 3.85 16 31 H 0.34 5.80 8.42 -89.69 -0.76 5.05 16 32 H 0.06 1.38 6.91 -2.39 -0.02 1.37 16 33 H 0.05 1.52 7.68 -2.39 -0.02 1.51 16 34 H 0.07 2.20 8.08 -2.38 -0.02 2.18 16 35 H 0.07 1.63 7.98 -2.39 -0.02 1.61 16 36 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.04 1.46 6.99 -2.39 -0.02 1.45 16 38 H 0.01 0.48 7.20 -2.39 -0.02 0.47 16 39 H 0.01 0.26 7.57 -2.39 -0.02 0.24 16 40 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -72.76 317.99 -1.98 -74.74 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -0.62 Total: 15.93 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 3.88 Total: -19.59 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -5.60 Total: -96.56 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -1.53 Total: -20.69 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.17 kcal Total: -72.76 -1.98 -74.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385282810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.039 kcal (2) G-P(sol) polarization free energy of solvation -72.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds