Wall clock time and date at job start Mon Mar 30 2020 04:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.06465 * 2 1 4 4 C 1.53992 * 109.92062 * 121.20839 * 2 1 3 5 5 C 1.54593 * 105.13762 * 120.57787 * 4 2 1 6 6 H 1.09004 * 110.72511 * 263.59272 * 5 4 2 7 7 C 1.52997 * 110.72279 * 140.31759 * 5 4 2 8 8 N 1.46895 * 109.47285 * 174.99811 * 7 5 4 9 9 C 1.54933 * 102.92635 * 21.95740 * 5 4 2 10 10 N 1.47906 * 109.91213 * 238.79959 * 2 1 3 11 11 C 1.46897 * 111.00194 * 94.80254 * 10 2 1 12 12 C 1.52998 * 109.47551 * 169.99639 * 11 10 2 13 13 O 1.42905 * 109.46811 * 64.99716 * 12 11 10 14 14 C 1.42904 * 113.99610 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46754 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00138 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99722 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00073 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 119.99815 * 19 17 15 22 22 H 1.48498 * 109.47295 * 240.00422 * 19 17 15 23 23 H 1.09010 * 109.47131 * 181.20570 * 1 2 3 24 24 H 1.09002 * 109.47163 * 301.19746 * 1 2 3 25 25 H 1.08999 * 109.47761 * 61.20463 * 1 2 3 26 26 H 1.08996 * 110.30537 * 239.49243 * 4 2 1 27 27 H 1.09002 * 110.30548 * 1.65718 * 4 2 1 28 28 H 1.09009 * 109.47024 * 294.99828 * 7 5 4 29 29 H 1.09001 * 109.47398 * 54.99374 * 7 5 4 30 30 H 1.00902 * 111.00286 * 56.04406 * 8 7 5 31 31 H 1.00908 * 111.00134 * 179.97438 * 8 7 5 32 32 H 1.09001 * 110.66794 * 204.15303 * 9 5 4 33 33 H 1.08991 * 110.66724 * 81.01545 * 9 5 4 34 34 H 1.08997 * 109.47486 * 49.99295 * 11 10 2 35 35 H 1.08998 * 109.46893 * 289.99859 * 11 10 2 36 36 H 1.08997 * 109.47076 * 305.00345 * 12 11 10 37 37 H 1.08994 * 109.47566 * 184.99825 * 12 11 10 38 38 H 1.08996 * 109.47296 * 60.00390 * 14 13 12 39 39 H 1.08994 * 109.47160 * 299.99947 * 14 13 12 40 40 H 0.97000 * 119.99651 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0547 -0.7502 1.2383 5 6 2.9060 -1.9117 0.6760 6 1 2.3215 -2.8306 0.6288 7 6 4.1683 -2.1139 1.5164 8 7 4.8945 -3.2957 1.0328 9 6 3.2681 -1.4184 -0.7474 10 7 2.0337 -0.7204 -1.1895 11 6 2.3210 0.2123 -2.2874 12 6 3.0671 -0.5250 -3.4011 13 8 2.2142 -1.5228 -3.9661 14 6 2.8183 -2.2741 -5.0210 15 6 1.8352 -3.2921 -5.5393 16 1 0.8478 -3.3583 -5.1067 17 6 2.1960 -4.1380 -6.5665 18 7 3.3982 -4.0570 -7.0936 19 14 0.9778 -5.4003 -7.2085 20 1 -0.2954 -5.2885 -6.4524 21 1 0.7205 -5.1515 -8.6498 22 1 1.5396 -6.7638 -7.0341 23 1 -0.3634 -1.0275 0.0216 24 1 -0.3633 0.5323 0.8791 25 1 -0.3634 0.4950 -0.9005 26 1 2.6714 -0.0896 1.8475 27 1 1.2229 -1.1401 1.8249 28 1 4.8069 -1.2346 1.4303 29 1 3.8904 -2.2602 2.5602 30 1 5.1071 -3.2124 0.0499 31 1 5.7332 -3.4505 1.5720 32 1 3.4888 -2.2615 -1.4022 33 1 4.1096 -0.7266 -0.7123 34 1 2.9381 1.0308 -1.9168 35 1 1.3854 0.6114 -2.6792 36 1 3.9579 -0.9993 -2.9895 37 1 3.3582 0.1848 -4.1753 38 1 3.7038 -2.7847 -4.6426 39 1 3.1045 -1.6008 -5.8289 40 1 4.0311 -3.4023 -6.7595 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385282811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:41 Heat of formation + Delta-G solvation = -56.956272 kcal Electronic energy + Delta-G solvation = -18088.560020 eV Core-core repulsion = 15323.557474 eV Total energy + Delta-G solvation = -2765.002546 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.54548 -36.79780 -35.10131 -33.13603 -32.16052 -30.73728 -28.17202 -26.19715 -25.60041 -24.49258 -22.45420 -21.47058 -20.16135 -19.99822 -16.93624 -16.28476 -15.97903 -15.62784 -15.45844 -14.54449 -14.38005 -14.07629 -13.70999 -13.50765 -13.23890 -13.19406 -12.68884 -12.29020 -12.04290 -12.00511 -11.59051 -11.49642 -11.02033 -10.86352 -10.72854 -10.67773 -10.59681 -10.53970 -10.08657 -10.06396 -8.83481 -8.78971 -8.57820 -8.20614 -8.16500 -6.41736 -4.09346 3.46802 3.51143 3.66924 3.99840 4.36385 4.48364 4.55098 4.67277 4.81561 4.92586 5.09135 5.26955 5.36289 5.36417 5.40983 5.47317 5.50999 5.56697 5.61376 5.76178 5.77637 5.84731 5.90539 6.00001 6.03265 6.17903 6.24138 6.32957 6.38264 6.79525 6.98956 7.10396 7.16995 7.24173 7.30290 7.96617 8.24571 8.71877 8.87242 9.61208 10.98660 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.005336 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.059108 B = 5246.015156 C = 5672.015013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.060 3.940 3 H 0.046 0.954 4 C -0.120 4.120 5 C -0.092 4.092 6 H 0.094 0.906 7 C 0.073 3.927 8 N -0.851 5.851 9 C 0.041 3.959 10 N -0.495 5.495 11 C 0.054 3.946 12 C 0.061 3.939 13 O -0.369 6.369 14 C 0.185 3.815 15 C -0.591 4.591 16 H 0.062 0.938 17 C 0.016 3.984 18 N -0.915 5.915 19 Si 1.083 2.917 20 H -0.286 1.286 21 H -0.286 1.286 22 H -0.285 1.285 23 H 0.064 0.936 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.023 0.977 29 H 0.071 0.929 30 H 0.345 0.655 31 H 0.339 0.661 32 H 0.088 0.912 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.082 0.918 36 H 0.036 0.964 37 H 0.038 0.962 38 H -0.008 1.008 39 H -0.008 1.008 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 8.615 17.214 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.049 4.049 3 H 0.064 0.936 4 C -0.159 4.159 5 C -0.111 4.111 6 H 0.112 0.888 7 C -0.058 4.058 8 N -0.381 5.381 9 C -0.087 4.087 10 N -0.220 5.220 11 C -0.074 4.074 12 C -0.017 4.017 13 O -0.288 6.288 14 C 0.110 3.890 15 C -0.629 4.629 16 H 0.080 0.920 17 C -0.187 4.187 18 N -0.551 5.551 19 Si 0.911 3.089 20 H -0.212 1.212 21 H -0.212 1.212 22 H -0.212 1.212 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.041 0.959 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.151 0.849 32 H 0.106 0.894 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.010 0.990 39 H 0.009 0.991 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.472 6.614 16.159 17.467 hybrid contribution 2.056 2.721 1.011 3.557 sum 1.584 9.335 17.171 19.608 Atomic orbital electron populations 1.21733 0.93917 1.02563 1.00904 1.22420 0.96619 0.95688 0.90156 0.93594 1.22493 0.99533 0.96837 0.97005 1.22138 0.95781 0.99257 0.93949 0.88792 1.21790 0.94269 0.90850 0.98933 1.58691 1.29267 1.41388 1.08716 1.23285 0.91234 0.98493 0.95685 1.64700 1.26405 1.25744 1.05119 1.22307 1.00486 0.92930 0.91703 1.22345 0.93323 0.91800 0.94262 1.88007 1.39159 1.48817 1.52855 1.20274 0.94335 0.90150 0.84222 1.21960 1.01328 1.18839 1.20769 0.91995 1.25926 0.99499 0.99343 0.93928 1.70748 1.05637 1.36163 1.42579 0.83345 0.74364 0.75293 0.75896 1.21214 1.21246 1.21176 0.91713 0.92957 0.92621 0.91850 0.90725 0.95906 0.91061 0.84230 0.84928 0.89350 0.94742 0.94402 0.89920 0.94629 0.94364 0.98986 0.99069 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.32 37.16 0.35 -1.24 16 2 C 0.06 0.74 3.08 -66.64 -0.21 0.54 16 3 H 0.05 0.54 7.57 -51.93 -0.39 0.14 16 4 C -0.12 -1.29 6.15 -25.38 -0.16 -1.44 16 5 C -0.09 -1.12 3.28 -88.76 -0.29 -1.41 16 6 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 7 C 0.07 0.75 6.15 -3.83 -0.02 0.72 16 8 N -0.85 -9.14 9.62 -10.37 -0.10 -9.24 16 9 C 0.04 0.59 3.94 -1.90 -0.01 0.58 16 10 N -0.50 -7.79 4.98 -222.58 -1.11 -8.90 16 11 C 0.05 0.85 5.41 -3.83 -0.02 0.83 16 12 C 0.06 1.16 5.76 37.16 0.21 1.38 16 13 O -0.37 -9.28 10.27 -35.23 -0.36 -9.64 16 14 C 0.18 5.19 5.00 36.01 0.18 5.37 16 15 C -0.59 -18.08 9.43 -34.44 -0.32 -18.41 16 16 H 0.06 1.93 7.81 -52.48 -0.41 1.52 16 17 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 18 N -0.91 -28.56 13.65 55.43 0.76 -27.80 16 19 Si 1.08 26.23 29.90 -169.99 -5.08 21.15 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.58 7.85 -51.93 -0.41 0.18 16 27 H 0.07 0.75 7.69 -51.93 -0.40 0.35 16 28 H 0.02 0.22 7.99 -51.92 -0.42 -0.19 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.34 3.86 8.39 -39.29 -0.33 3.53 16 31 H 0.34 2.89 9.08 -39.29 -0.36 2.53 16 32 H 0.09 1.51 7.52 -51.93 -0.39 1.12 16 33 H 0.03 0.46 7.81 -51.93 -0.41 0.05 16 34 H 0.04 0.51 7.81 -51.93 -0.41 0.10 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.04 0.65 6.52 -51.93 -0.34 0.32 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 38 H -0.01 -0.21 8.01 -51.93 -0.42 -0.63 16 39 H -0.01 -0.24 8.01 -51.93 -0.42 -0.65 16 40 H 0.27 8.26 7.22 -40.82 -0.29 7.96 16 LS Contribution 319.00 15.07 4.81 4.81 Total: -1.00 -33.12 319.00 -8.61 -41.72 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.13 Total: 0.62 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -0.39 Total: -12.72 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.45 Total: -45.94 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.36 Total: -9.64 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.08 Total: 21.15 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.12 -8.61 -41.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385282811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.233 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds