Wall clock time and date at job start Mon Mar 30 2020 04:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.06465 * 2 1 4 4 C 1.53992 * 109.92062 * 121.20839 * 2 1 3 5 5 C 1.54593 * 105.13762 * 120.57787 * 4 2 1 6 6 H 1.09004 * 110.72511 * 263.59272 * 5 4 2 7 7 C 1.52997 * 110.72279 * 140.31759 * 5 4 2 8 8 N 1.46895 * 109.47285 * 174.99811 * 7 5 4 9 9 C 1.54933 * 102.92635 * 21.95740 * 5 4 2 10 10 N 1.47906 * 109.91213 * 238.79959 * 2 1 3 11 11 C 1.46897 * 111.00194 * 94.80254 * 10 2 1 12 12 C 1.52998 * 109.47551 * 169.99639 * 11 10 2 13 13 O 1.42905 * 109.46811 * 64.99716 * 12 11 10 14 14 C 1.42904 * 113.99610 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46754 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00138 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99722 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00073 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 119.99815 * 19 17 15 22 22 H 1.48498 * 109.47295 * 240.00422 * 19 17 15 23 23 H 1.09010 * 109.47131 * 181.20570 * 1 2 3 24 24 H 1.09002 * 109.47163 * 301.19746 * 1 2 3 25 25 H 1.08999 * 109.47761 * 61.20463 * 1 2 3 26 26 H 1.08996 * 110.30537 * 239.49243 * 4 2 1 27 27 H 1.09002 * 110.30548 * 1.65718 * 4 2 1 28 28 H 1.09009 * 109.47024 * 294.99828 * 7 5 4 29 29 H 1.09001 * 109.47398 * 54.99374 * 7 5 4 30 30 H 1.00902 * 111.00286 * 56.04406 * 8 7 5 31 31 H 1.00908 * 111.00134 * 179.97438 * 8 7 5 32 32 H 1.09001 * 110.66794 * 204.15303 * 9 5 4 33 33 H 1.08991 * 110.66724 * 81.01545 * 9 5 4 34 34 H 1.08997 * 109.47486 * 49.99295 * 11 10 2 35 35 H 1.08998 * 109.46893 * 289.99859 * 11 10 2 36 36 H 1.08997 * 109.47076 * 305.00345 * 12 11 10 37 37 H 1.08994 * 109.47566 * 184.99825 * 12 11 10 38 38 H 1.08996 * 109.47296 * 60.00390 * 14 13 12 39 39 H 1.08994 * 109.47160 * 299.99947 * 14 13 12 40 40 H 0.97000 * 119.99651 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0547 -0.7502 1.2383 5 6 2.9060 -1.9117 0.6760 6 1 2.3215 -2.8306 0.6288 7 6 4.1683 -2.1139 1.5164 8 7 4.8945 -3.2957 1.0328 9 6 3.2681 -1.4184 -0.7474 10 7 2.0337 -0.7204 -1.1895 11 6 2.3210 0.2123 -2.2874 12 6 3.0671 -0.5250 -3.4011 13 8 2.2142 -1.5228 -3.9661 14 6 2.8183 -2.2741 -5.0210 15 6 1.8352 -3.2921 -5.5393 16 1 0.8478 -3.3583 -5.1067 17 6 2.1960 -4.1380 -6.5665 18 7 3.3982 -4.0570 -7.0936 19 14 0.9778 -5.4003 -7.2085 20 1 -0.2954 -5.2885 -6.4524 21 1 0.7205 -5.1515 -8.6498 22 1 1.5396 -6.7638 -7.0341 23 1 -0.3634 -1.0275 0.0216 24 1 -0.3633 0.5323 0.8791 25 1 -0.3634 0.4950 -0.9005 26 1 2.6714 -0.0896 1.8475 27 1 1.2229 -1.1401 1.8249 28 1 4.8069 -1.2346 1.4303 29 1 3.8904 -2.2602 2.5602 30 1 5.1071 -3.2124 0.0499 31 1 5.7332 -3.4505 1.5720 32 1 3.4888 -2.2615 -1.4022 33 1 4.1096 -0.7266 -0.7123 34 1 2.9381 1.0308 -1.9168 35 1 1.3854 0.6114 -2.6792 36 1 3.9579 -0.9993 -2.9895 37 1 3.3582 0.1848 -4.1753 38 1 3.7038 -2.7847 -4.6426 39 1 3.1045 -1.6008 -5.8289 40 1 4.0311 -3.4023 -6.7595 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385282811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:40 Heat of formation + Delta-G solvation = -82.535745 kcal Electronic energy + Delta-G solvation = -18089.669229 eV Core-core repulsion = 15323.557474 eV Total energy + Delta-G solvation = -2766.111755 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64161 -38.62861 -36.12903 -35.24619 -33.49685 -31.70141 -29.74722 -28.16379 -26.59824 -25.57275 -24.73933 -22.70406 -21.27490 -20.96799 -19.20129 -17.63031 -17.32791 -16.95751 -16.52058 -16.00507 -15.77459 -15.55434 -15.35622 -14.69408 -14.68816 -14.32205 -13.97932 -13.72651 -13.59737 -13.32814 -13.01509 -12.75663 -12.61608 -12.53460 -12.09765 -11.92976 -11.79448 -11.65756 -11.56335 -11.49967 -10.86253 -10.84334 -10.34458 -9.64977 -9.31897 -8.84800 -6.54909 1.51302 1.61400 1.81246 2.48223 2.87498 3.02387 3.07732 3.50192 3.58220 3.73764 4.00834 4.10680 4.12960 4.16577 4.30794 4.37636 4.43006 4.47944 4.49572 4.52453 4.62085 4.76974 4.79147 4.85514 4.88076 4.90692 4.99739 5.05748 5.18284 5.32786 5.41622 5.67450 5.90576 6.00997 6.13441 6.18701 6.33224 6.53230 6.68611 7.25677 8.56455 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.005336 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.059108 B = 5246.015156 C = 5672.015013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.057 3.943 3 H 0.063 0.937 4 C -0.111 4.111 5 C -0.087 4.087 6 H 0.066 0.934 7 C 0.078 3.922 8 N -0.865 5.865 9 C 0.045 3.955 10 N -0.528 5.528 11 C 0.062 3.938 12 C 0.052 3.948 13 O -0.389 6.389 14 C 0.197 3.803 15 C -0.620 4.620 16 H 0.049 0.951 17 C -0.028 4.028 18 N -0.928 5.928 19 Si 1.132 2.868 20 H -0.274 1.274 21 H -0.269 1.269 22 H -0.271 1.271 23 H 0.046 0.954 24 H 0.080 0.920 25 H 0.043 0.957 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.036 0.964 29 H 0.085 0.915 30 H 0.339 0.661 31 H 0.351 0.649 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.048 0.952 38 H -0.021 1.021 39 H -0.019 1.019 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.646 9.301 18.666 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.050 4.050 3 H 0.081 0.919 4 C -0.150 4.150 5 C -0.106 4.106 6 H 0.085 0.915 7 C -0.053 4.053 8 N -0.395 5.395 9 C -0.083 4.083 10 N -0.253 5.253 11 C -0.066 4.066 12 C -0.025 4.025 13 O -0.308 6.308 14 C 0.122 3.878 15 C -0.658 4.658 16 H 0.067 0.933 17 C -0.225 4.225 18 N -0.565 5.565 19 Si 0.951 3.049 20 H -0.199 1.199 21 H -0.195 1.195 22 H -0.196 1.196 23 H 0.065 0.935 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.151 0.849 31 H 0.165 0.835 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.066 0.934 38 H -0.004 1.004 39 H -0.002 1.002 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.776 7.331 17.645 19.123 hybrid contribution 2.194 2.573 0.608 3.436 sum 1.418 9.904 18.253 20.815 Atomic orbital electron populations 1.21733 0.93801 1.01674 1.01675 1.22534 0.96711 0.96378 0.89424 0.91949 1.22479 0.99817 0.96239 0.96446 1.22053 0.96757 0.98684 0.93138 0.91548 1.21772 0.93345 0.91153 0.99023 1.58702 1.30196 1.41998 1.08645 1.23162 0.91464 0.97459 0.96215 1.64640 1.27264 1.26818 1.06598 1.22226 1.00325 0.93226 0.90815 1.22696 0.93503 0.90817 0.95485 1.87954 1.40678 1.50070 1.52084 1.19929 0.93362 0.89844 0.84683 1.22283 1.01370 1.20355 1.21757 0.93251 1.27595 1.00402 1.00874 0.93648 1.70873 1.06276 1.36275 1.43073 0.82771 0.72536 0.73296 0.76303 1.19899 1.19458 1.19576 0.93505 0.90119 0.93809 0.89296 0.89882 0.94566 0.89650 0.84859 0.83535 0.93209 0.93299 0.90986 0.90544 0.94162 0.93414 1.00359 1.00188 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.32 71.98 0.67 -2.25 16 2 C 0.06 1.30 3.08 45.06 0.14 1.44 16 3 H 0.06 1.24 7.57 -2.39 -0.02 1.22 16 4 C -0.11 -2.09 6.15 31.47 0.19 -1.90 16 5 C -0.09 -2.03 3.28 -9.59 -0.03 -2.07 16 6 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 7 C 0.08 1.45 6.15 86.30 0.53 1.98 16 8 N -0.86 -17.93 9.62 -186.72 -1.80 -19.73 16 9 C 0.04 1.28 3.94 86.65 0.34 1.62 16 10 N -0.53 -16.29 4.98 -858.10 -4.27 -20.56 16 11 C 0.06 1.91 5.41 86.30 0.47 2.37 16 12 C 0.05 2.01 5.76 71.98 0.41 2.42 16 13 O -0.39 -20.11 10.27 -148.98 -1.53 -21.64 16 14 C 0.20 11.46 5.00 71.24 0.36 11.82 16 15 C -0.62 -38.88 9.43 25.60 0.24 -38.64 16 16 H 0.05 3.15 7.81 -2.91 -0.02 3.12 16 17 C -0.03 -1.68 5.46 84.65 0.46 -1.22 16 18 N -0.93 -58.57 13.65 21.45 0.29 -58.27 16 19 Si 1.13 52.21 29.90 68.60 2.05 54.26 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 24 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.09 1.26 7.85 -2.39 -0.02 1.24 16 27 H 0.08 1.44 7.69 -2.39 -0.02 1.42 16 28 H 0.04 0.59 7.99 -2.38 -0.02 0.57 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.34 7.66 8.39 -89.69 -0.75 6.91 16 31 H 0.35 5.57 9.08 -89.69 -0.81 4.76 16 32 H 0.05 1.79 7.52 -2.39 -0.02 1.77 16 33 H 0.05 1.23 7.81 -2.39 -0.02 1.22 16 34 H 0.07 1.73 7.81 -2.39 -0.02 1.71 16 35 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.04 1.51 6.52 -2.39 -0.02 1.49 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H -0.02 -1.26 8.01 -2.39 -0.02 -1.28 16 39 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 40 H 0.26 16.25 7.22 -92.71 -0.67 15.58 16 Total: -1.00 -72.33 319.00 -1.93 -74.26 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -0.46 Total: 16.09 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 3.79 Total: -24.41 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -5.77 Total: -98.55 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -1.53 Total: -21.64 kcal Atomic # 14 Polarization: 52.21 SS G_CDS: 2.05 Total: 54.26 kcal Total: -72.33 -1.93 -74.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385282811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.275 kcal (2) G-P(sol) polarization free energy of solvation -72.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds