Wall clock time and date at job start Mon Mar 30 2020 04:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.45309 * 2 1 4 4 C 1.53032 * 109.46254 * 240.02415 * 2 1 3 5 5 H 1.08991 * 109.50645 * 60.86577 * 4 2 1 6 6 N 1.46898 * 109.50287 * 300.74189 * 4 2 1 7 7 C 1.53127 * 109.27834 * 180.80762 * 4 2 1 8 8 C 1.53121 * 109.15965 * 57.64982 * 7 4 2 9 9 C 1.53038 * 109.27716 * 302.34680 * 8 7 4 10 10 N 1.46842 * 109.45993 * 119.96787 * 2 1 3 11 11 C 1.46904 * 111.00178 * 305.85568 * 10 2 1 12 12 C 1.52996 * 109.47219 * 301.83761 * 11 10 2 13 13 O 1.42901 * 109.47091 * 64.99734 * 12 11 10 14 14 C 1.42905 * 113.99785 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46972 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 H 1.08998 * 109.47348 * 300.02944 * 1 2 3 24 24 H 1.09005 * 109.46833 * 60.03029 * 1 2 3 25 25 H 1.09003 * 109.47152 * 180.02562 * 1 2 3 26 26 H 1.00895 * 111.00129 * 180.19767 * 6 4 2 27 27 H 1.00897 * 111.00236 * 304.15354 * 6 4 2 28 28 H 1.09002 * 109.51943 * 297.75032 * 7 4 2 29 29 H 1.08994 * 109.57576 * 177.59061 * 7 4 2 30 30 H 1.09003 * 109.49663 * 182.40905 * 8 7 4 31 31 H 1.09001 * 109.50389 * 62.28751 * 8 7 4 32 32 H 1.08999 * 109.46393 * 299.16365 * 9 8 7 33 33 H 1.09004 * 109.45746 * 179.19669 * 9 8 7 34 34 H 1.09002 * 109.46932 * 181.83425 * 11 10 2 35 35 H 1.08994 * 109.46819 * 61.84049 * 11 10 2 36 36 H 1.09003 * 109.47090 * 304.99634 * 12 11 10 37 37 H 1.09002 * 109.47184 * 185.00003 * 12 11 10 38 38 H 1.09001 * 109.47112 * 60.00541 * 14 13 12 39 39 H 1.08993 * 109.47057 * 299.99974 * 14 13 12 40 40 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 1 1.6895 -0.1983 -2.1398 6 7 1.5359 -2.1007 -1.2601 7 6 3.5710 -0.7361 -1.2355 8 6 4.0548 -1.4188 0.0469 9 6 3.4864 -0.6775 1.2592 10 7 2.0192 -0.6916 1.1994 11 6 1.4372 -0.1103 2.4166 12 6 1.7843 1.3781 2.4873 13 8 1.1572 2.0655 1.4028 14 6 1.4184 3.4702 1.3763 15 6 0.7126 4.0903 0.1980 16 1 0.1231 3.4734 -0.4642 17 6 0.8185 5.4452 -0.0341 18 7 1.5358 6.1965 0.7725 19 14 -0.0570 6.2139 -1.4942 20 1 0.2145 7.6737 -1.5219 21 1 -1.5190 5.9841 -1.3719 22 1 0.4379 5.5950 -2.7501 23 1 -0.3634 0.5143 0.8897 24 1 -0.3633 0.5134 -0.8903 25 1 -0.3633 -1.0277 0.0005 26 1 1.8619 -2.5987 -2.0748 27 1 1.7924 -2.5856 -0.4133 28 1 3.9457 0.2870 -1.2671 29 1 3.9389 -1.2857 -2.1018 30 1 5.1439 -1.3946 0.0834 31 1 3.7124 -2.4535 0.0598 32 1 3.8403 0.3534 1.2532 33 1 3.8174 -1.1697 2.1737 34 1 1.8411 -0.6197 3.2915 35 1 0.3541 -0.2302 2.3943 36 1 2.8651 1.5027 2.4201 37 1 1.4292 1.7895 3.4322 38 1 2.4915 3.6386 1.2862 39 1 1.0554 3.9247 2.2981 40 1 1.9901 5.7974 1.5309 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385325225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:51 Heat of formation + Delta-G solvation = -51.440862 kcal Electronic energy + Delta-G solvation = -19128.000279 eV Core-core repulsion = 16363.236899 eV Total energy + Delta-G solvation = -2764.763380 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.73671 -36.90678 -34.48684 -32.93127 -32.50842 -29.86256 -28.27933 -26.47538 -25.97530 -23.73142 -22.57998 -21.76058 -20.73426 -18.55231 -16.99958 -16.51177 -15.89779 -15.18211 -15.07006 -14.77154 -14.25268 -13.90791 -13.72442 -13.51295 -13.10138 -12.44711 -12.38283 -12.11225 -11.79325 -11.61405 -11.55156 -11.39649 -11.03383 -10.87256 -10.73544 -10.55934 -10.40115 -10.21122 -10.11697 -9.87543 -8.83473 -8.66007 -8.37395 -8.28361 -7.75504 -6.48724 -4.17767 3.41296 3.43517 3.62242 4.14946 4.42217 4.73916 4.85849 4.92456 4.99506 5.13342 5.29032 5.37900 5.49357 5.55354 5.62443 5.70138 5.78935 5.86002 5.90194 5.96533 6.02645 6.11600 6.23558 6.27495 6.34299 6.39403 6.62486 6.72377 6.88408 7.01286 7.08833 7.37949 7.45266 7.58219 7.78276 7.84881 8.13847 8.60018 8.76587 9.53049 10.91181 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026436 B = 0.006957 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.901151 B = 4023.912587 C = 4392.613125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.083 3.917 3 H 0.087 0.913 4 C 0.097 3.903 5 H 0.079 0.921 6 N -0.834 5.834 7 C -0.159 4.159 8 C -0.113 4.113 9 C 0.048 3.952 10 N -0.528 5.528 11 C 0.058 3.942 12 C 0.020 3.980 13 O -0.370 6.370 14 C 0.183 3.817 15 C -0.593 4.593 16 H 0.061 0.939 17 C 0.017 3.983 18 N -0.911 5.911 19 Si 1.076 2.924 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.286 1.286 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.326 0.674 27 H 0.346 0.654 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.035 0.965 37 H 0.038 0.962 38 H -0.009 1.009 39 H -0.007 1.007 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.589 -15.161 -0.298 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.024 4.024 3 H 0.105 0.895 4 C -0.015 4.015 5 H 0.097 0.903 6 N -0.363 5.363 7 C -0.198 4.198 8 C -0.151 4.151 9 C -0.080 4.080 10 N -0.252 5.252 11 C -0.071 4.071 12 C -0.059 4.059 13 O -0.289 6.289 14 C 0.108 3.892 15 C -0.631 4.631 16 H 0.079 0.921 17 C -0.186 4.186 18 N -0.547 5.547 19 Si 0.903 3.097 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.212 1.212 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.137 0.863 27 H 0.161 0.839 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.008 0.992 39 H 0.010 0.990 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.314 -13.970 -1.281 14.218 hybrid contribution 1.972 -0.637 1.251 2.420 sum 4.285 -14.607 -0.030 15.222 Atomic orbital electron populations 1.21606 0.93726 1.00680 1.01867 1.21940 0.96642 0.96867 0.86972 0.89528 1.21565 0.90738 0.90452 0.98753 0.90311 1.58871 1.66786 1.03312 1.07351 1.22431 0.98749 1.01400 0.97245 1.21530 0.99426 0.99575 0.94580 1.22101 0.88906 0.99018 0.97972 1.62142 1.05716 1.54693 1.02647 1.22289 1.01550 0.90744 0.92471 1.23066 0.96618 0.94453 0.91798 1.88061 1.72688 1.22430 1.45710 1.20279 0.94741 0.77075 0.97115 1.21867 1.33861 0.95341 1.12006 0.92052 1.25908 0.96728 0.93612 1.02368 1.70805 1.29840 1.38702 1.15390 0.83441 0.75772 0.76062 0.74398 1.20665 1.21150 1.21200 0.92025 0.93276 0.92708 0.86259 0.83883 0.91601 0.92454 0.92009 0.91802 0.94621 0.91396 0.90532 0.89503 0.94709 0.94339 0.99180 0.98958 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 8.03 37.16 0.30 -1.85 16 2 C 0.08 1.41 1.53 -67.73 -0.10 1.30 16 3 H 0.09 1.82 5.58 -51.93 -0.29 1.53 16 4 C 0.10 1.41 3.16 -67.63 -0.21 1.20 16 5 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 6 N -0.83 -10.55 8.38 -4.60 -0.04 -10.59 16 7 C -0.16 -2.05 5.67 -26.60 -0.15 -2.21 16 8 C -0.11 -1.33 5.76 -26.65 -0.15 -1.48 16 9 C 0.05 0.65 5.06 -3.83 -0.02 0.63 16 10 N -0.53 -7.79 3.99 -226.70 -0.90 -8.69 16 11 C 0.06 0.86 5.51 -3.82 -0.02 0.84 16 12 C 0.02 0.36 5.75 37.16 0.21 0.57 16 13 O -0.37 -8.38 5.16 -35.23 -0.18 -8.56 16 14 C 0.18 4.88 5.00 36.00 0.18 5.06 16 15 C -0.59 -17.26 9.43 -34.44 -0.32 -17.59 16 16 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 17 C 0.02 0.49 5.46 -17.82 -0.10 0.40 16 18 N -0.91 -27.93 13.65 55.43 0.76 -27.17 16 19 Si 1.08 25.45 29.90 -169.99 -5.08 20.37 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 23 H 0.06 1.18 5.18 -51.93 -0.27 0.91 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.91 7.59 -51.93 -0.39 0.52 16 26 H 0.33 3.49 9.04 -39.29 -0.36 3.13 16 27 H 0.35 4.35 6.76 -39.29 -0.27 4.08 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.70 6.90 -51.93 -0.36 0.34 16 32 H 0.04 0.56 6.65 -51.93 -0.35 0.21 16 33 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 35 H 0.09 1.34 6.32 -51.93 -0.33 1.02 16 36 H 0.03 0.63 6.46 -51.93 -0.34 0.30 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H -0.01 -0.26 8.01 -51.93 -0.42 -0.68 16 39 H -0.01 -0.20 8.01 -51.93 -0.42 -0.62 16 40 H 0.27 8.13 7.22 -40.82 -0.29 7.83 16 LS Contribution 299.28 15.07 4.51 4.51 Total: -1.00 -30.13 299.28 -7.98 -38.11 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.65 Total: 5.15 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.39 Total: -13.13 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.19 Total: -46.45 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.18 Total: -8.56 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.13 -7.98 -38.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385325225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.329 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds