Wall clock time and date at job start Mon Mar 30 2020 04:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.45309 * 2 1 4 4 C 1.53032 * 109.46254 * 240.02415 * 2 1 3 5 5 H 1.08991 * 109.50645 * 60.86577 * 4 2 1 6 6 N 1.46898 * 109.50287 * 300.74189 * 4 2 1 7 7 C 1.53127 * 109.27834 * 180.80762 * 4 2 1 8 8 C 1.53121 * 109.15965 * 57.64982 * 7 4 2 9 9 C 1.53038 * 109.27716 * 302.34680 * 8 7 4 10 10 N 1.46842 * 109.45993 * 119.96787 * 2 1 3 11 11 C 1.46904 * 111.00178 * 305.85568 * 10 2 1 12 12 C 1.52996 * 109.47219 * 301.83761 * 11 10 2 13 13 O 1.42901 * 109.47091 * 64.99734 * 12 11 10 14 14 C 1.42905 * 113.99785 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46972 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 H 1.08998 * 109.47348 * 300.02944 * 1 2 3 24 24 H 1.09005 * 109.46833 * 60.03029 * 1 2 3 25 25 H 1.09003 * 109.47152 * 180.02562 * 1 2 3 26 26 H 1.00895 * 111.00129 * 180.19767 * 6 4 2 27 27 H 1.00897 * 111.00236 * 304.15354 * 6 4 2 28 28 H 1.09002 * 109.51943 * 297.75032 * 7 4 2 29 29 H 1.08994 * 109.57576 * 177.59061 * 7 4 2 30 30 H 1.09003 * 109.49663 * 182.40905 * 8 7 4 31 31 H 1.09001 * 109.50389 * 62.28751 * 8 7 4 32 32 H 1.08999 * 109.46393 * 299.16365 * 9 8 7 33 33 H 1.09004 * 109.45746 * 179.19669 * 9 8 7 34 34 H 1.09002 * 109.46932 * 181.83425 * 11 10 2 35 35 H 1.08994 * 109.46819 * 61.84049 * 11 10 2 36 36 H 1.09003 * 109.47090 * 304.99634 * 12 11 10 37 37 H 1.09002 * 109.47184 * 185.00003 * 12 11 10 38 38 H 1.09001 * 109.47112 * 60.00541 * 14 13 12 39 39 H 1.08993 * 109.47057 * 299.99974 * 14 13 12 40 40 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 1 1.6895 -0.1983 -2.1398 6 7 1.5359 -2.1007 -1.2601 7 6 3.5710 -0.7361 -1.2355 8 6 4.0548 -1.4188 0.0469 9 6 3.4864 -0.6775 1.2592 10 7 2.0192 -0.6916 1.1994 11 6 1.4372 -0.1103 2.4166 12 6 1.7843 1.3781 2.4873 13 8 1.1572 2.0655 1.4028 14 6 1.4184 3.4702 1.3763 15 6 0.7126 4.0903 0.1980 16 1 0.1231 3.4734 -0.4642 17 6 0.8185 5.4452 -0.0341 18 7 1.5358 6.1965 0.7725 19 14 -0.0570 6.2139 -1.4942 20 1 0.2145 7.6737 -1.5219 21 1 -1.5190 5.9841 -1.3719 22 1 0.4379 5.5950 -2.7501 23 1 -0.3634 0.5143 0.8897 24 1 -0.3633 0.5134 -0.8903 25 1 -0.3633 -1.0277 0.0005 26 1 1.8619 -2.5987 -2.0748 27 1 1.7924 -2.5856 -0.4133 28 1 3.9457 0.2870 -1.2671 29 1 3.9389 -1.2857 -2.1018 30 1 5.1439 -1.3946 0.0834 31 1 3.7124 -2.4535 0.0598 32 1 3.8403 0.3534 1.2532 33 1 3.8174 -1.1697 2.1737 34 1 1.8411 -0.6197 3.2915 35 1 0.3541 -0.2302 2.3943 36 1 2.8651 1.5027 2.4201 37 1 1.4292 1.7895 3.4322 38 1 2.4915 3.6386 1.2862 39 1 1.0554 3.9247 2.2981 40 1 1.9901 5.7974 1.5309 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385325225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:50 Heat of formation + Delta-G solvation = -73.085663 kcal Electronic energy + Delta-G solvation = -19128.938868 eV Core-core repulsion = 16363.236899 eV Total energy + Delta-G solvation = -2765.701969 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.00966 -38.58110 -35.93185 -34.97382 -33.71259 -31.18280 -29.73741 -28.33527 -27.31281 -25.07192 -24.75398 -23.01210 -21.95750 -19.89008 -19.11238 -17.83854 -17.55262 -16.63635 -16.33468 -16.14453 -15.71021 -15.38216 -15.32330 -14.82623 -14.68161 -14.14474 -13.82443 -13.62574 -13.30140 -13.16288 -12.89924 -12.76809 -12.58965 -12.50570 -12.22096 -11.99078 -11.93979 -11.81821 -11.40979 -11.17274 -10.85568 -10.78180 -10.27528 -9.42277 -9.10629 -8.84882 -6.55863 1.49343 1.57843 1.78647 2.45852 2.85304 3.01305 3.14673 3.75731 3.81113 3.92626 4.04018 4.11752 4.16840 4.25370 4.35395 4.48155 4.52261 4.55101 4.61751 4.74219 4.79683 4.84215 4.87531 4.93197 4.98806 5.02192 5.05824 5.25653 5.33380 5.43299 5.55388 5.66847 5.89474 6.13901 6.23894 6.31643 6.44128 6.60725 6.85125 7.24954 8.55462 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026436 B = 0.006957 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.901151 B = 4023.912587 C = 4392.613125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.088 3.912 3 H 0.041 0.959 4 C 0.102 3.898 5 H 0.062 0.938 6 N -0.831 5.831 7 C -0.155 4.155 8 C -0.106 4.106 9 C 0.045 3.955 10 N -0.515 5.515 11 C 0.063 3.937 12 C 0.012 3.988 13 O -0.372 6.372 14 C 0.196 3.804 15 C -0.612 4.612 16 H 0.055 0.945 17 C -0.030 4.030 18 N -0.930 5.930 19 Si 1.123 2.877 20 H -0.277 1.277 21 H -0.267 1.267 22 H -0.267 1.267 23 H 0.042 0.958 24 H 0.031 0.969 25 H 0.068 0.932 26 H 0.342 0.658 27 H 0.351 0.649 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.008 0.992 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.033 0.967 37 H 0.043 0.957 38 H -0.029 1.029 39 H -0.024 1.024 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.708 -17.237 -0.824 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.021 4.021 3 H 0.058 0.942 4 C -0.011 4.011 5 H 0.081 0.919 6 N -0.362 5.362 7 C -0.195 4.195 8 C -0.144 4.144 9 C -0.083 4.083 10 N -0.239 5.239 11 C -0.065 4.065 12 C -0.066 4.066 13 O -0.292 6.292 14 C 0.120 3.880 15 C -0.650 4.650 16 H 0.073 0.927 17 C -0.227 4.227 18 N -0.567 5.567 19 Si 0.942 3.058 20 H -0.202 1.202 21 H -0.191 1.191 22 H -0.192 1.192 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.087 0.913 26 H 0.155 0.845 27 H 0.166 0.834 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.026 0.974 33 H 0.111 0.889 34 H 0.131 0.869 35 H 0.102 0.898 36 H 0.052 0.948 37 H 0.061 0.939 38 H -0.011 1.011 39 H -0.007 1.007 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.447 -16.091 -1.790 16.374 hybrid contribution 1.967 -0.070 1.482 2.464 sum 4.413 -16.161 -0.308 16.755 Atomic orbital electron populations 1.21493 0.94477 1.00855 1.00064 1.21713 0.95960 0.95084 0.89319 0.94173 1.21350 0.91881 0.91226 0.96614 0.91941 1.58763 1.66839 1.02300 1.08326 1.22392 0.97378 1.00567 0.99174 1.21523 1.00406 0.99859 0.92635 1.22242 0.87730 0.98084 1.00250 1.62198 1.06722 1.53286 1.01675 1.22389 1.01734 0.88348 0.94027 1.23392 0.96364 0.96303 0.90556 1.88089 1.73217 1.20123 1.47729 1.19885 0.93076 0.79417 0.95586 1.22188 1.34113 0.95968 1.12721 0.92681 1.27535 0.96444 0.94381 1.04325 1.70932 1.31030 1.38934 1.15805 0.82881 0.75732 0.75479 0.71686 1.20184 1.19147 1.19235 0.93860 0.95025 0.91299 0.84546 0.83390 0.94062 0.90243 0.90287 0.89966 0.97361 0.88857 0.86850 0.89849 0.94850 0.93903 1.01101 1.00690 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.97 8.03 71.98 0.58 -3.39 16 2 C 0.09 2.97 1.53 44.94 0.07 3.04 16 3 H 0.04 1.77 5.58 -2.39 -0.01 1.76 16 4 C 0.10 2.88 3.16 44.97 0.14 3.02 16 5 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 6 N -0.83 -19.05 8.38 -168.47 -1.41 -20.46 16 7 C -0.16 -3.81 5.67 30.68 0.17 -3.63 16 8 C -0.11 -2.20 5.76 30.65 0.18 -2.03 16 9 C 0.04 1.12 5.06 86.33 0.44 1.56 16 10 N -0.52 -14.43 3.99 -871.13 -3.48 -17.91 16 11 C 0.06 1.80 5.51 86.30 0.48 2.28 16 12 C 0.01 0.45 5.75 71.98 0.41 0.87 16 13 O -0.37 -17.54 5.16 -148.98 -0.77 -18.31 16 14 C 0.20 10.95 5.00 71.24 0.36 11.30 16 15 C -0.61 -36.76 9.43 25.60 0.24 -36.52 16 16 H 0.05 3.30 7.81 -2.91 -0.02 3.28 16 17 C -0.03 -1.74 5.46 84.65 0.46 -1.28 16 18 N -0.93 -58.24 13.65 21.45 0.29 -57.95 16 19 Si 1.12 51.00 29.90 68.60 2.05 53.05 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 H 0.04 1.67 5.18 -2.39 -0.01 1.66 16 24 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.07 2.22 7.59 -2.39 -0.02 2.21 16 26 H 0.34 6.30 9.04 -89.70 -0.81 5.49 16 27 H 0.35 7.67 6.76 -89.70 -0.61 7.06 16 28 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.45 6.90 -2.39 -0.02 1.44 16 32 H 0.01 0.25 6.65 -2.39 -0.02 0.24 16 33 H 0.09 1.89 8.06 -2.38 -0.02 1.87 16 34 H 0.11 2.46 8.06 -2.39 -0.02 2.44 16 35 H 0.08 2.48 6.32 -2.39 -0.02 2.46 16 36 H 0.03 1.24 6.46 -2.39 -0.02 1.22 16 37 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 38 H -0.03 -1.68 8.01 -2.39 -0.02 -1.70 16 39 H -0.02 -1.43 8.01 -2.39 -0.02 -1.45 16 40 H 0.25 16.09 7.22 -92.71 -0.67 15.42 16 Total: -1.00 -66.86 299.28 -0.08 -66.93 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -0.29 Total: 19.44 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: 3.53 Total: -24.79 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -4.60 Total: -96.32 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.77 Total: -18.31 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.05 kcal Total: -66.86 -0.08 -66.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385325225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.151 kcal (2) G-P(sol) polarization free energy of solvation -66.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds