Wall clock time and date at job start Mon Mar 30 2020 04:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.46481 * 2 1 4 4 C 1.53036 * 109.46579 * 240.02061 * 2 1 3 5 5 H 1.09003 * 109.50366 * 300.74803 * 4 2 1 6 6 N 1.46907 * 109.50335 * 60.85637 * 4 2 1 7 7 C 1.53116 * 109.28545 * 180.80388 * 4 2 1 8 8 C 1.53122 * 109.15693 * 57.64947 * 7 4 2 9 9 C 1.53033 * 109.31265 * 302.32753 * 8 7 4 10 10 N 1.46848 * 109.46538 * 119.96501 * 2 1 3 11 11 C 1.46900 * 110.99947 * 305.85739 * 10 2 1 12 12 C 1.53000 * 109.46938 * 284.63259 * 11 10 2 13 13 O 1.42895 * 109.47010 * 66.31245 * 12 11 10 14 14 C 1.42908 * 114.00253 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47452 * 179.97438 * 14 13 12 16 16 H 1.08013 * 119.99829 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00110 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00135 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00139 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47111 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47202 * 120.00218 * 19 17 15 22 22 H 1.48493 * 109.47460 * 240.00123 * 19 17 15 23 23 H 1.09005 * 109.46963 * 186.86605 * 1 2 3 24 24 H 1.09006 * 109.47424 * 306.86338 * 1 2 3 25 25 H 1.08996 * 109.47580 * 66.86874 * 1 2 3 26 26 H 1.00902 * 111.00163 * 179.80203 * 6 4 2 27 27 H 1.00898 * 110.99855 * 303.76553 * 6 4 2 28 28 H 1.09005 * 109.52184 * 297.75221 * 7 4 2 29 29 H 1.08999 * 109.52601 * 177.55945 * 7 4 2 30 30 H 1.08995 * 109.50145 * 62.29745 * 8 7 4 31 31 H 1.09002 * 109.49768 * 182.37026 * 8 7 4 32 32 H 1.09000 * 109.45954 * 179.21608 * 9 8 7 33 33 H 1.08996 * 109.46344 * 299.18168 * 9 8 7 34 34 H 1.08993 * 109.47013 * 44.63272 * 11 10 2 35 35 H 1.09002 * 109.46781 * 164.63630 * 11 10 2 36 36 H 1.09004 * 109.46900 * 186.30639 * 12 11 10 37 37 H 1.08999 * 109.47342 * 306.30989 * 12 11 10 38 38 H 1.08997 * 109.46525 * 300.00043 * 14 13 12 39 39 H 1.08995 * 109.46568 * 59.99848 * 14 13 12 40 40 H 0.96999 * 120.00379 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2498 5 1 1.6659 -1.7448 -1.2574 6 7 1.5675 -0.0167 -2.4494 7 6 3.5709 -0.7362 -1.2356 8 6 4.0547 -1.4187 0.0469 9 6 3.4873 -0.6777 1.2596 10 7 2.0193 -0.6915 1.1995 11 6 1.4373 -0.1102 2.4166 12 6 2.1163 1.2273 2.7179 13 8 1.7942 2.1671 1.6907 14 6 2.3813 3.4565 1.8777 15 6 1.9778 4.3616 0.7424 16 1 1.3367 3.9895 -0.0433 17 6 2.4261 5.6649 0.7070 18 7 3.2063 6.1181 1.6638 19 14 1.9265 6.7867 -0.7007 20 1 1.0517 6.0412 -1.6411 21 1 1.1893 7.9580 -0.1625 22 1 3.1408 7.2527 -1.4172 23 1 -0.3633 -1.0204 0.1229 24 1 -0.3634 0.6165 0.8222 25 1 -0.3634 0.4037 -0.9450 26 1 1.8942 -0.4723 -3.2884 27 1 0.5617 0.0630 -2.4493 28 1 3.9457 0.2870 -1.2673 29 1 3.9379 -1.2865 -2.1019 30 1 3.7125 -2.4535 0.0597 31 1 5.1439 -1.3951 0.0829 32 1 3.8189 -1.1700 2.1738 33 1 3.8412 0.3532 1.2536 34 1 0.3694 0.0497 2.2680 35 1 1.5897 -0.7918 3.2535 36 1 1.7654 1.6046 3.6785 37 1 3.1964 1.0861 2.7556 38 1 2.0356 3.8797 2.8208 39 1 3.4670 3.3618 1.8981 40 1 3.5214 7.0352 1.6392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385325226.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:54 Heat of formation + Delta-G solvation = -49.050552 kcal Electronic energy + Delta-G solvation = -18946.333259 eV Core-core repulsion = 16181.673531 eV Total energy + Delta-G solvation = -2764.659728 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.49314 -36.65344 -34.51613 -33.03127 -32.57099 -29.96713 -28.12129 -26.75622 -26.24432 -23.64991 -22.34021 -21.19007 -20.75064 -18.95344 -16.37760 -16.14260 -15.89731 -15.37973 -14.90896 -14.80672 -14.41613 -14.20257 -13.77003 -13.28003 -13.05905 -12.62475 -12.24109 -12.02054 -11.87839 -11.60985 -11.46669 -11.22229 -10.87725 -10.82457 -10.75625 -10.62065 -10.41154 -10.28241 -10.07690 -9.81519 -9.07234 -8.80746 -8.43089 -8.17799 -7.75247 -6.09109 -4.10336 3.30911 3.37447 3.44782 4.14617 4.37565 4.73590 4.87613 5.06831 5.12192 5.26055 5.27772 5.40731 5.60062 5.66974 5.68546 5.73263 5.89262 5.96065 5.98266 6.01692 6.08015 6.14313 6.18269 6.23017 6.32713 6.39851 6.53019 6.62260 6.90978 7.11418 7.28152 7.41872 7.46130 7.59603 7.66069 7.81936 8.16538 8.56978 9.03398 9.54681 11.02496 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022567 B = 0.007278 C = 0.006507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.446077 B = 3846.262619 C = 4302.102516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.077 3.923 3 H 0.095 0.905 4 C 0.102 3.898 5 H 0.032 0.968 6 N -0.844 5.844 7 C -0.115 4.115 8 C -0.112 4.112 9 C 0.048 3.952 10 N -0.529 5.529 11 C 0.052 3.948 12 C 0.022 3.978 13 O -0.386 6.386 14 C 0.195 3.805 15 C -0.509 4.509 16 H 0.067 0.933 17 C 0.056 3.944 18 N -0.900 5.900 19 Si 0.906 3.094 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.047 0.953 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.335 0.665 27 H 0.341 0.659 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.040 0.960 38 H 0.002 0.998 39 H 0.001 0.999 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 -15.139 -2.696 15.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 H 0.113 0.887 4 C -0.009 4.009 5 H 0.050 0.950 6 N -0.375 5.375 7 C -0.153 4.153 8 C -0.150 4.150 9 C -0.080 4.080 10 N -0.254 5.254 11 C -0.076 4.076 12 C -0.057 4.057 13 O -0.306 6.306 14 C 0.121 3.879 15 C -0.547 4.547 16 H 0.086 0.914 17 C -0.145 4.145 18 N -0.539 5.539 19 Si 0.733 3.267 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.148 0.852 27 H 0.155 0.845 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.302 -14.895 -2.560 15.169 hybrid contribution -0.143 0.776 -0.465 0.916 sum -1.445 -14.119 -3.025 14.511 Atomic orbital electron populations 1.21863 0.95316 1.00725 1.02080 1.21765 0.94793 0.98827 0.87731 0.88728 1.21284 0.94760 0.94521 0.90353 0.95011 1.58631 1.16803 1.58320 1.03793 1.21605 0.95030 1.01689 0.96993 1.21519 0.99516 0.99569 0.94391 1.22132 0.88219 0.99707 0.97921 1.62203 1.06714 1.54175 1.02283 1.22356 1.00438 0.92350 0.92460 1.23057 0.98656 0.91426 0.92560 1.87890 1.74160 1.23287 1.45301 1.20181 0.92412 0.78352 0.96976 1.21077 1.30519 0.95125 1.07990 0.91438 1.24941 0.95083 0.97869 0.96629 1.69974 1.34468 1.16589 1.32905 0.86310 0.78398 0.80162 0.81836 1.19356 1.20947 1.20890 0.93394 0.91642 0.92488 0.85250 0.84481 0.90877 0.92685 0.91796 0.91709 0.91396 0.93466 0.89653 0.90329 0.94478 0.94172 0.97972 0.98084 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.44 37.15 0.31 -1.84 16 2 C 0.08 1.28 1.66 -67.73 -0.11 1.16 16 3 H 0.10 2.03 5.78 -51.93 -0.30 1.72 16 4 C 0.10 1.48 2.92 -67.63 -0.20 1.28 16 5 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 6 N -0.84 -11.56 9.23 -4.60 -0.04 -11.60 16 7 C -0.12 -1.61 5.58 -26.61 -0.15 -1.76 16 8 C -0.11 -1.44 6.09 -26.65 -0.16 -1.60 16 9 C 0.05 0.71 4.52 -3.79 -0.02 0.70 16 10 N -0.53 -8.16 4.69 -226.63 -1.06 -9.22 16 11 C 0.05 0.80 5.80 -3.82 -0.02 0.78 16 12 C 0.02 0.41 5.54 37.16 0.21 0.62 16 13 O -0.39 -9.06 7.53 -35.23 -0.27 -9.32 16 14 C 0.20 5.36 5.69 36.00 0.20 5.57 16 15 C -0.51 -15.03 9.43 -34.45 -0.32 -15.35 16 16 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 19 Si 0.91 22.21 29.54 -169.99 -5.02 17.19 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 1.08 6.42 -51.93 -0.33 0.74 16 25 H 0.06 0.82 6.27 -51.93 -0.33 0.49 16 26 H 0.34 3.78 9.04 -39.29 -0.36 3.43 16 27 H 0.34 4.32 6.94 -39.29 -0.27 4.05 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 33 H 0.05 0.83 6.44 -51.93 -0.33 0.50 16 34 H 0.09 1.32 5.56 -51.93 -0.29 1.03 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.04 0.75 6.05 -51.93 -0.31 0.43 16 38 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 39 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -30.98 304.89 -8.14 -39.11 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.72 Total: 4.69 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.36 Total: -8.94 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.37 Total: -47.32 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.27 Total: -9.32 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.98 -8.14 -39.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385325226.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.936 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds