Wall clock time and date at job start Mon Mar 30 2020 04:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.46481 * 2 1 4 4 C 1.53036 * 109.46579 * 240.02061 * 2 1 3 5 5 H 1.09003 * 109.50366 * 300.74803 * 4 2 1 6 6 N 1.46907 * 109.50335 * 60.85637 * 4 2 1 7 7 C 1.53116 * 109.28545 * 180.80388 * 4 2 1 8 8 C 1.53122 * 109.15693 * 57.64947 * 7 4 2 9 9 C 1.53033 * 109.31265 * 302.32753 * 8 7 4 10 10 N 1.46848 * 109.46538 * 119.96501 * 2 1 3 11 11 C 1.46900 * 110.99947 * 305.85739 * 10 2 1 12 12 C 1.53000 * 109.46938 * 284.63259 * 11 10 2 13 13 O 1.42895 * 109.47010 * 66.31245 * 12 11 10 14 14 C 1.42908 * 114.00253 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47452 * 179.97438 * 14 13 12 16 16 H 1.08013 * 119.99829 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00110 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00135 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00139 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47111 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47202 * 120.00218 * 19 17 15 22 22 H 1.48493 * 109.47460 * 240.00123 * 19 17 15 23 23 H 1.09005 * 109.46963 * 186.86605 * 1 2 3 24 24 H 1.09006 * 109.47424 * 306.86338 * 1 2 3 25 25 H 1.08996 * 109.47580 * 66.86874 * 1 2 3 26 26 H 1.00902 * 111.00163 * 179.80203 * 6 4 2 27 27 H 1.00898 * 110.99855 * 303.76553 * 6 4 2 28 28 H 1.09005 * 109.52184 * 297.75221 * 7 4 2 29 29 H 1.08999 * 109.52601 * 177.55945 * 7 4 2 30 30 H 1.08995 * 109.50145 * 62.29745 * 8 7 4 31 31 H 1.09002 * 109.49768 * 182.37026 * 8 7 4 32 32 H 1.09000 * 109.45954 * 179.21608 * 9 8 7 33 33 H 1.08996 * 109.46344 * 299.18168 * 9 8 7 34 34 H 1.08993 * 109.47013 * 44.63272 * 11 10 2 35 35 H 1.09002 * 109.46781 * 164.63630 * 11 10 2 36 36 H 1.09004 * 109.46900 * 186.30639 * 12 11 10 37 37 H 1.08999 * 109.47342 * 306.30989 * 12 11 10 38 38 H 1.08997 * 109.46525 * 300.00043 * 14 13 12 39 39 H 1.08995 * 109.46568 * 59.99848 * 14 13 12 40 40 H 0.96999 * 120.00379 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2498 5 1 1.6659 -1.7448 -1.2574 6 7 1.5675 -0.0167 -2.4494 7 6 3.5709 -0.7362 -1.2356 8 6 4.0547 -1.4187 0.0469 9 6 3.4873 -0.6777 1.2596 10 7 2.0193 -0.6915 1.1995 11 6 1.4373 -0.1102 2.4166 12 6 2.1163 1.2273 2.7179 13 8 1.7942 2.1671 1.6907 14 6 2.3813 3.4565 1.8777 15 6 1.9778 4.3616 0.7424 16 1 1.3367 3.9895 -0.0433 17 6 2.4261 5.6649 0.7070 18 7 3.2063 6.1181 1.6638 19 14 1.9265 6.7867 -0.7007 20 1 1.0517 6.0412 -1.6411 21 1 1.1893 7.9580 -0.1625 22 1 3.1408 7.2527 -1.4172 23 1 -0.3633 -1.0204 0.1229 24 1 -0.3634 0.6165 0.8222 25 1 -0.3634 0.4037 -0.9450 26 1 1.8942 -0.4723 -3.2884 27 1 0.5617 0.0630 -2.4493 28 1 3.9457 0.2870 -1.2673 29 1 3.9379 -1.2865 -2.1019 30 1 3.7125 -2.4535 0.0597 31 1 5.1439 -1.3951 0.0829 32 1 3.8189 -1.1700 2.1738 33 1 3.8412 0.3532 1.2536 34 1 0.3694 0.0497 2.2680 35 1 1.5897 -0.7918 3.2535 36 1 1.7654 1.6046 3.6785 37 1 3.1964 1.0861 2.7556 38 1 2.0356 3.8797 2.8208 39 1 3.4670 3.3618 1.8981 40 1 3.5214 7.0352 1.6392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385325226.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:54 Heat of formation + Delta-G solvation = -72.568044 kcal Electronic energy + Delta-G solvation = -18947.353054 eV Core-core repulsion = 16181.673531 eV Total energy + Delta-G solvation = -2765.679523 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.77522 -38.37256 -35.88596 -34.83844 -34.10963 -31.31679 -29.77813 -28.53999 -27.46625 -25.06034 -24.48577 -22.39181 -22.02114 -20.25248 -18.60934 -17.58638 -17.33339 -16.97498 -16.42084 -16.14174 -16.07808 -15.52839 -15.33437 -14.71708 -14.56577 -14.08926 -13.70729 -13.42885 -13.16035 -13.10449 -12.98599 -12.81923 -12.69760 -12.65081 -12.22936 -12.06717 -11.93190 -11.69581 -11.46103 -11.25264 -11.02956 -10.84348 -10.22232 -9.50237 -9.13492 -8.34554 -6.46224 1.36656 1.38116 1.53238 2.32199 2.89126 2.99277 3.23564 3.68033 3.85261 3.96669 4.11890 4.20809 4.23618 4.29998 4.45818 4.53133 4.55367 4.66818 4.75158 4.81575 4.82129 4.84938 4.94911 5.00648 5.05534 5.10006 5.13690 5.22500 5.35028 5.38445 5.53051 5.57312 5.94002 6.12729 6.18785 6.42616 6.51314 6.69549 6.79604 7.25574 8.78049 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022567 B = 0.007278 C = 0.006507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.446077 B = 3846.262619 C = 4302.102516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.077 3.923 3 H 0.041 0.959 4 C 0.108 3.892 5 H 0.049 0.951 6 N -0.858 5.858 7 C -0.115 4.115 8 C -0.105 4.105 9 C 0.046 3.954 10 N -0.518 5.518 11 C 0.058 3.942 12 C 0.014 3.986 13 O -0.390 6.390 14 C 0.213 3.787 15 C -0.538 4.538 16 H 0.059 0.941 17 C 0.006 3.994 18 N -0.932 5.932 19 Si 0.980 3.020 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.272 1.272 23 H 0.069 0.931 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.350 0.650 27 H 0.346 0.654 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.008 0.992 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.041 0.959 37 H 0.039 0.961 38 H -0.019 1.019 39 H -0.025 1.025 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.066 -16.623 -3.663 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.032 4.032 3 H 0.059 0.941 4 C -0.004 4.004 5 H 0.067 0.933 6 N -0.392 5.392 7 C -0.153 4.153 8 C -0.144 4.144 9 C -0.082 4.082 10 N -0.242 5.242 11 C -0.071 4.071 12 C -0.065 4.065 13 O -0.310 6.310 14 C 0.137 3.863 15 C -0.575 4.575 16 H 0.078 0.922 17 C -0.192 4.192 18 N -0.572 5.572 19 Si 0.803 3.197 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.198 1.198 23 H 0.088 0.912 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.164 0.836 27 H 0.161 0.839 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.027 0.973 34 H 0.105 0.895 35 H 0.132 0.868 36 H 0.059 0.941 37 H 0.057 0.943 38 H -0.001 1.001 39 H -0.007 1.007 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.831 -16.403 -3.522 16.877 hybrid contribution 0.051 1.190 -0.106 1.196 sum -1.780 -15.213 -3.628 15.740 Atomic orbital electron populations 1.21801 0.94295 1.01658 1.01637 1.21683 0.95675 0.96351 0.89504 0.94107 1.21210 0.94878 0.94824 0.89475 0.93342 1.58594 1.17373 1.58900 1.04339 1.21609 0.94905 1.00057 0.98747 1.21513 1.00344 0.99919 0.92581 1.22212 0.87820 0.98044 1.00117 1.62319 1.07047 1.52988 1.01838 1.22470 1.00060 0.90761 0.93761 1.23403 0.99250 0.92155 0.91674 1.87910 1.73738 1.22228 1.47125 1.19734 0.90797 0.80223 0.95506 1.21336 1.31316 0.96321 1.08566 0.92247 1.25940 0.94558 0.99278 0.99472 1.70077 1.34980 1.17412 1.34685 0.85179 0.78451 0.77907 0.78169 1.18843 1.19485 1.19772 0.91190 0.93471 0.92042 0.83617 0.83913 0.94479 0.90365 0.89808 0.90311 0.89285 0.97339 0.89536 0.86818 0.94060 0.94329 1.00126 1.00696 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 8.44 71.98 0.61 -3.42 16 2 C 0.08 2.52 1.66 44.93 0.07 2.60 16 3 H 0.04 1.83 5.78 -2.39 -0.01 1.81 16 4 C 0.11 2.96 2.92 44.96 0.13 3.09 16 5 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 6 N -0.86 -22.69 9.23 -168.45 -1.56 -24.24 16 7 C -0.12 -3.11 5.58 30.67 0.17 -2.94 16 8 C -0.11 -2.52 6.09 30.65 0.19 -2.33 16 9 C 0.05 1.33 4.52 86.31 0.39 1.72 16 10 N -0.52 -15.34 4.69 -870.92 -4.09 -19.43 16 11 C 0.06 1.70 5.80 86.30 0.50 2.20 16 12 C 0.01 0.52 5.54 71.98 0.40 0.92 16 13 O -0.39 -19.18 7.53 -148.98 -1.12 -20.30 16 14 C 0.21 12.32 5.69 71.23 0.41 12.72 16 15 C -0.54 -32.89 9.43 25.60 0.24 -32.65 16 16 H 0.06 3.64 7.81 -2.90 -0.02 3.62 16 17 C 0.01 0.34 5.46 84.65 0.46 0.80 16 18 N -0.93 -57.44 13.29 21.44 0.28 -57.16 16 19 Si 0.98 45.80 29.54 68.60 2.03 47.83 16 20 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 23 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 24 H 0.05 1.55 6.42 -2.38 -0.02 1.53 16 25 H 0.06 1.72 6.27 -2.39 -0.01 1.71 16 26 H 0.35 7.33 9.04 -89.69 -0.81 6.52 16 27 H 0.35 8.40 6.94 -89.70 -0.62 7.77 16 28 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 2.17 8.12 -2.39 -0.02 2.15 16 33 H 0.01 0.31 6.44 -2.39 -0.02 0.29 16 34 H 0.09 2.58 5.56 -2.39 -0.01 2.56 16 35 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.04 1.48 6.05 -2.39 -0.01 1.47 16 38 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 39 H -0.02 -1.52 8.14 -2.39 -0.02 -1.54 16 40 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -68.80 304.89 -1.29 -70.09 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -0.41 Total: 20.50 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 3.57 Total: -17.29 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -5.36 Total: -100.83 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -1.12 Total: -20.30 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -68.80 -1.29 -70.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385325226.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.477 kcal (2) G-P(sol) polarization free energy of solvation -68.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds