Wall clock time and date at job start Mon Mar 30 2020 05:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47174 * 2 1 4 4 C 1.50697 * 109.46761 * 239.99699 * 2 1 3 5 5 H 1.07997 * 119.99795 * 274.99117 * 4 2 1 6 6 C 1.37883 * 119.99889 * 95.00588 * 4 2 1 7 7 N 1.31511 * 120.00012 * 184.91176 * 6 4 2 8 8 Si 1.86798 * 119.99735 * 4.90440 * 6 4 2 9 9 H 1.48503 * 109.46733 * 84.84018 * 8 6 4 10 10 H 1.48502 * 109.47050 * 204.83315 * 8 6 4 11 11 H 1.48490 * 109.47471 * 324.84001 * 8 6 4 12 12 N 1.46906 * 109.46789 * 119.99854 * 2 1 3 13 13 C 1.46892 * 110.99952 * 274.99920 * 12 2 1 14 14 C 1.53007 * 109.47143 * 180.02562 * 13 12 2 15 15 N 1.46900 * 109.47124 * 180.02562 * 14 13 12 16 16 C 1.44092 * 110.95234 * 304.14986 * 15 14 13 17 17 C 1.54624 * 112.40002 * 217.24204 * 16 15 14 18 18 C 1.54576 * 110.90139 * 319.60887 * 17 16 15 19 19 O 1.39911 * 113.22552 * 319.28828 * 18 17 16 20 20 C 1.44525 * 112.80651 * 94.90147 * 19 18 17 21 21 C 1.46263 * 111.30495 * 280.44569 * 20 19 18 22 22 H 1.08998 * 109.47887 * 175.04561 * 1 2 3 23 23 H 1.09001 * 109.47534 * 295.04847 * 1 2 3 24 24 H 1.08998 * 109.46870 * 55.04119 * 1 2 3 25 25 H 0.96994 * 120.00421 * 179.97438 * 7 6 4 26 26 H 1.00906 * 110.99730 * 38.95465 * 12 2 1 27 27 H 1.09001 * 109.47879 * 60.00304 * 13 12 2 28 28 H 1.09003 * 109.47584 * 300.00126 * 13 12 2 29 29 H 1.08993 * 109.46949 * 59.99508 * 14 13 12 30 30 H 1.09006 * 109.46857 * 299.99837 * 14 13 12 31 31 H 1.09002 * 108.92521 * 96.49096 * 16 15 14 32 32 H 1.08996 * 108.91940 * 337.98813 * 16 15 14 33 33 H 1.08997 * 109.19217 * 199.24268 * 17 16 15 34 34 H 1.09001 * 109.15435 * 79.94663 * 17 16 15 35 35 H 1.08998 * 108.73548 * 198.32132 * 18 17 16 36 36 H 1.09000 * 108.73453 * 80.25722 * 18 17 16 37 37 H 1.08997 * 109.11058 * 159.97648 * 20 19 18 38 38 H 1.09000 * 109.10977 * 40.91180 * 20 19 18 39 39 H 1.09000 * 108.91194 * 180.21640 * 21 20 19 40 40 H 1.09002 * 108.91495 * 298.84819 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.1355 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3581 7 7 2.7059 -0.6132 -3.4622 8 14 2.3134 1.8790 -2.3175 9 1 3.5990 2.3948 -1.7822 10 1 2.1057 2.3990 -3.6929 11 1 1.1985 2.3274 -1.4451 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5961 -0.5329 3.5743 15 7 2.6583 0.3821 4.7218 16 6 3.4681 1.5347 4.4186 17 6 4.3063 2.0014 5.6312 18 6 3.4831 1.9148 6.9367 19 8 2.1573 2.3340 6.7818 20 6 1.2503 1.2391 6.5226 21 6 1.3055 0.8235 5.1214 22 1 -0.3635 -1.0238 -0.0887 23 1 -0.3634 0.4351 0.9310 24 1 -0.3633 0.5888 -0.8422 25 1 2.9363 -0.1051 -4.2556 26 1 1.4494 -1.4979 1.4101 27 1 1.0870 0.6164 2.5526 28 1 2.7588 1.0462 2.1183 29 1 3.5915 -0.9263 3.3684 30 1 1.9199 -1.3567 3.8031 31 1 2.8178 2.3509 4.1042 32 1 4.1420 1.2872 3.5984 33 1 4.6207 3.0331 5.4736 34 1 5.1886 1.3678 5.7213 35 1 3.9607 2.5369 7.6936 36 1 3.4853 0.8816 7.2840 37 1 0.2343 1.5530 6.7620 38 1 1.5203 0.3943 7.1563 39 1 0.6062 0.0014 4.9688 40 1 1.0071 1.6620 4.4921 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389860737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:32 Heat of formation + Delta-G solvation = -36.544759 kcal Electronic energy + Delta-G solvation = -18260.414282 eV Core-core repulsion = 15496.296845 eV Total energy + Delta-G solvation = -2764.117436 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.87680 -37.29728 -35.65635 -32.81002 -32.44313 -30.72855 -28.70636 -26.43928 -25.41294 -25.04261 -22.66897 -21.58525 -20.06143 -19.78083 -17.02203 -16.66845 -16.50879 -15.94481 -15.23301 -14.76675 -14.61713 -14.30889 -13.70770 -13.40228 -13.30422 -12.96365 -12.44810 -12.27973 -12.16530 -11.91634 -11.65664 -11.60004 -11.16108 -11.07395 -10.92701 -10.74591 -10.57389 -10.43581 -10.16161 -9.77777 -9.68442 -9.20325 -8.56302 -8.31774 -7.42345 -6.06879 -4.04032 3.26537 3.34352 3.34852 3.75788 3.83066 4.40435 4.80409 4.91536 4.92455 5.03909 5.09583 5.17234 5.21064 5.31654 5.37761 5.48999 5.55126 5.60182 5.73996 5.80651 5.83687 5.84788 5.96181 6.02069 6.12034 6.21986 6.30367 6.36716 6.56977 6.76499 7.00562 7.08378 7.10074 7.17268 7.68013 7.92936 8.32838 8.64921 9.00893 9.55957 11.06852 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.035919 B = 0.005093 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.340367 B = 5496.381640 C = 5704.656834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.180 3.820 3 H 0.034 0.966 4 C -0.492 4.492 5 H 0.076 0.924 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.270 1.270 12 N -0.671 5.671 13 C 0.022 3.978 14 C 0.058 3.942 15 N -0.527 5.527 16 C 0.050 3.950 17 C -0.140 4.140 18 C 0.069 3.931 19 O -0.377 6.377 20 C 0.066 3.934 21 C 0.015 3.985 22 H 0.049 0.951 23 H 0.018 0.982 24 H 0.049 0.951 25 H 0.264 0.736 26 H 0.327 0.673 27 H 0.016 0.984 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.248 4.259 19.823 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.071 3.929 3 H 0.052 0.948 4 C -0.530 4.530 5 H 0.095 0.905 6 C -0.131 4.131 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.195 1.195 12 N -0.301 5.301 13 C -0.110 4.110 14 C -0.070 4.070 15 N -0.251 5.251 16 C -0.079 4.079 17 C -0.178 4.178 18 C -0.009 4.009 19 O -0.296 6.296 20 C -0.011 4.011 21 C -0.113 4.113 22 H 0.068 0.932 23 H 0.037 0.963 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.144 0.856 27 H 0.034 0.966 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.353 4.303 19.876 20.339 hybrid contribution -1.234 1.335 -0.776 1.977 sum -1.587 5.639 19.100 19.978 Atomic orbital electron populations 1.22634 1.01023 1.00759 0.98510 1.19658 0.89369 0.94594 0.89241 0.94789 1.20859 1.42705 0.95709 0.93777 0.90545 1.24970 0.94778 0.97964 0.95413 1.69884 1.46680 1.35619 1.01679 0.86914 0.78852 0.86892 0.77046 1.20193 1.21441 1.19491 1.60898 1.57860 1.08694 1.02632 1.22685 0.98491 0.97139 0.92645 1.22360 1.02955 0.94561 0.87124 1.61880 1.10754 1.16265 1.36163 1.21930 0.96850 0.91928 0.97154 1.22687 0.98634 1.00981 0.95529 1.22152 0.82925 0.99761 0.96021 1.87730 1.17194 1.32870 1.91782 1.21719 0.94070 0.89752 0.95546 1.21776 0.91481 1.00370 0.97692 0.93191 0.96336 0.93235 0.92653 0.85590 0.96567 0.91799 0.89483 0.90970 0.93914 0.91040 0.91650 0.91055 0.91117 0.92767 0.89131 0.92260 0.90203 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 9.16 37.16 0.34 -3.25 16 2 C 0.18 4.23 2.23 -68.86 -0.15 4.08 16 3 H 0.03 0.84 4.95 -51.93 -0.26 0.58 16 4 C -0.49 -13.86 9.19 -34.44 -0.32 -14.18 16 5 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 7 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 8 Si 0.88 21.79 26.99 -169.99 -4.59 17.20 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 11 H -0.27 -6.44 6.82 56.52 0.39 -6.06 16 12 N -0.67 -13.57 6.23 -107.95 -0.67 -14.24 16 13 C 0.02 0.37 4.92 -3.82 -0.02 0.35 16 14 C 0.06 0.80 5.34 -3.82 -0.02 0.78 16 15 N -0.53 -6.61 4.48 -239.10 -1.07 -7.68 16 16 C 0.05 0.64 4.10 -4.47 -0.02 0.63 16 17 C -0.14 -1.50 6.52 -25.05 -0.16 -1.67 16 18 C 0.07 0.72 6.20 37.99 0.24 0.96 16 19 O -0.38 -4.54 10.39 -32.69 -0.34 -4.88 16 20 C 0.07 0.66 6.38 33.95 0.22 0.88 16 21 C 0.01 0.17 4.27 -6.53 -0.03 0.14 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.02 0.34 7.36 -51.93 -0.38 -0.05 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.33 6.13 8.48 -39.29 -0.33 5.79 16 27 H 0.02 0.27 6.34 -51.93 -0.33 -0.06 16 28 H 0.06 1.15 6.61 -51.93 -0.34 0.81 16 29 H 0.09 1.27 8.12 -51.93 -0.42 0.84 16 30 H 0.07 0.92 7.90 -51.93 -0.41 0.51 16 31 H 0.04 0.59 7.11 -51.93 -0.37 0.22 16 32 H 0.07 0.97 6.90 -51.93 -0.36 0.61 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.55 7.25 -51.93 -0.38 0.17 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.55 7.46 -51.93 -0.39 0.16 16 39 H 0.08 0.84 7.69 -51.93 -0.40 0.44 16 40 H 0.05 0.61 6.87 -51.93 -0.36 0.25 16 LS Contribution 305.13 15.07 4.60 4.60 Total: -1.00 -30.41 305.13 -8.16 -38.57 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.83 Total: 2.62 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -0.02 Total: -9.34 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.97 Total: -48.77 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.34 Total: -4.88 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.59 Total: 17.20 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.41 -8.16 -38.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389860737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.025 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds