Wall clock time and date at job start Mon Mar 30 2020 05:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00256 * 2 1 4 4 H 1.09006 * 110.62509 * 26.89604 * 3 2 1 5 5 C 1.55142 * 110.70964 * 149.99916 * 3 2 1 6 6 C 1.54901 * 101.65437 * 154.03701 * 5 3 2 7 7 H 1.08998 * 110.46897 * 81.81248 * 6 5 3 8 8 C 1.52996 * 110.37525 * 204.10280 * 6 5 3 9 9 N 1.46898 * 109.47458 * 171.82744 * 8 6 5 10 10 C 1.46900 * 111.00296 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.47283 * 325.00506 * 10 9 8 12 12 C 1.53006 * 109.46973 * 84.99930 * 10 9 8 13 13 C 1.50700 * 109.47305 * 205.00195 * 10 9 8 14 14 H 1.08000 * 119.99867 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99783 * 180.02562 * 13 10 9 16 16 N 1.31510 * 120.00435 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99621 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47248 * 90.00128 * 17 15 13 19 19 H 1.48499 * 109.47212 * 209.99977 * 17 15 13 20 20 H 1.48500 * 109.47333 * 330.00335 * 17 15 13 21 21 N 1.47850 * 104.79640 * 322.93321 * 6 5 3 22 22 C 1.46901 * 110.99817 * 146.36479 * 21 6 5 23 23 C 1.47436 * 108.56587 * 24.09312 * 21 6 5 24 24 H 1.09004 * 109.46877 * 299.99592 * 1 2 3 25 25 H 1.08996 * 109.47100 * 60.00068 * 1 2 3 26 26 H 1.08996 * 109.46937 * 179.97438 * 1 2 3 27 27 H 1.09008 * 110.98625 * 35.94547 * 5 3 2 28 28 H 1.08998 * 111.02551 * 272.14754 * 5 3 2 29 29 H 1.08995 * 109.47308 * 291.83043 * 8 6 5 30 30 H 1.09007 * 109.47301 * 51.82774 * 8 6 5 31 31 H 1.00903 * 110.99923 * 303.95788 * 9 8 6 32 32 H 1.09003 * 109.47143 * 179.97438 * 12 10 9 33 33 H 1.08998 * 109.47400 * 300.00324 * 12 10 9 34 34 H 1.09001 * 109.46645 * 60.00185 * 12 10 9 35 35 H 0.96998 * 120.00168 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.47401 * 59.99854 * 22 21 6 37 37 H 1.09001 * 109.46874 * 299.99867 * 22 21 6 38 38 H 1.09004 * 109.46970 * 179.97438 * 22 21 6 39 39 H 1.09006 * 109.88842 * 118.41368 * 23 21 6 40 40 H 1.08996 * 109.89166 * 239.60437 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3353 2.0263 0.4615 5 6 3.3815 1.2954 0.7256 6 6 4.0989 2.4937 0.0556 7 1 3.7875 3.4308 0.5171 8 6 5.6167 2.3301 0.1565 9 7 6.2757 3.3669 -0.6489 10 6 7.7374 3.2411 -0.5753 11 1 8.0234 2.9044 0.4212 12 6 8.2147 2.2238 -1.6137 13 6 8.3716 4.5793 -0.8546 14 1 7.7508 5.4374 -1.0661 15 6 9.7443 4.7079 -0.8412 16 7 10.5002 3.6629 -0.5841 17 14 10.5303 6.3666 -1.1881 18 1 10.6966 7.1117 0.0856 19 1 11.8589 6.1624 -1.8192 20 1 9.6603 7.1443 -2.1065 21 7 3.6691 2.4484 -1.3583 22 6 3.5590 3.8019 -1.9186 23 6 2.3793 1.7384 -1.4345 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.9165 0.3646 0.5365 28 1 3.2590 1.4623 1.7957 29 1 5.9244 2.4284 1.1975 30 1 5.9016 1.3457 -0.2151 31 1 5.9576 3.3379 -1.6060 32 1 9.2993 2.1307 -1.5594 33 1 7.7560 1.2558 -1.4117 34 1 7.9287 2.5605 -2.6102 35 1 11.4659 3.7535 -0.5743 36 1 4.5281 4.2980 -1.8635 37 1 2.8258 4.3726 -1.3486 38 1 3.2419 3.7395 -2.9596 39 1 1.6121 2.4045 -1.8296 40 1 2.4762 0.8607 -2.0734 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393517408.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:49 Heat of formation + Delta-G solvation = -34.453960 kcal Electronic energy + Delta-G solvation = -18174.614897 eV Core-core repulsion = 15410.588124 eV Total energy + Delta-G solvation = -2764.026772 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -39.59357 -37.26654 -35.44085 -32.48977 -31.56984 -29.87993 -27.32783 -26.77173 -25.27861 -25.00241 -23.17588 -21.19954 -20.01778 -19.78974 -17.13566 -16.27288 -16.01475 -15.36467 -14.97208 -14.76617 -14.29096 -13.93704 -13.82673 -13.05878 -12.86791 -12.70968 -12.30195 -12.09584 -11.91245 -11.72732 -11.59168 -11.23843 -11.09660 -10.86673 -10.80732 -10.66689 -10.53273 -10.24204 -10.00968 -9.79678 -9.64928 -8.91121 -8.28686 -8.14723 -7.07835 -5.91114 -3.94127 3.36747 3.42704 3.46691 3.53964 4.12149 4.48330 4.52967 4.76058 4.87947 5.08904 5.12403 5.21462 5.32175 5.40241 5.42284 5.52226 5.59593 5.69392 5.82258 5.87570 5.90769 5.95056 6.15817 6.28667 6.47062 6.55160 6.83689 6.99068 7.04577 7.14079 7.23198 7.25527 7.51262 7.85237 7.97501 8.38905 8.69157 8.75455 9.13213 9.70952 11.15882 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.051246 B = 0.004579 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.254102 B = 6113.983653 C = 6340.391266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.067 3.933 4 H 0.066 0.934 5 C -0.122 4.122 6 C 0.077 3.923 7 H 0.062 0.938 8 C 0.077 3.923 9 N -0.686 5.686 10 C 0.210 3.790 11 H 0.031 0.969 12 C -0.166 4.166 13 C -0.492 4.492 14 H 0.061 0.939 15 C 0.054 3.946 16 N -0.898 5.898 17 Si 0.896 3.104 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.275 1.275 21 N -0.522 5.522 22 C 0.015 3.985 23 C 0.024 3.976 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.332 0.668 32 H 0.086 0.914 33 H 0.006 0.994 34 H 0.026 0.974 35 H 0.258 0.742 36 H 0.095 0.905 37 H 0.021 0.979 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.098 -4.589 0.630 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.295 6.295 3 C 0.008 3.992 4 H 0.084 0.916 5 C -0.160 4.160 6 C -0.031 4.031 7 H 0.080 0.920 8 C -0.053 4.053 9 N -0.317 5.317 10 C 0.102 3.898 11 H 0.049 0.951 12 C -0.225 4.225 13 C -0.531 4.531 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.200 1.200 21 N -0.247 5.247 22 C -0.134 4.134 23 C -0.105 4.105 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.151 0.849 32 H 0.105 0.895 33 H 0.025 0.975 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.039 0.961 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.452 -4.578 0.841 18.062 hybrid contribution -0.211 0.719 -0.331 0.819 sum -17.663 -3.859 0.510 18.087 Atomic orbital electron populations 1.22785 0.81403 1.02658 0.99804 1.87953 1.19349 1.27297 1.94879 1.23451 0.95127 0.84607 0.96047 0.91558 1.22845 0.93848 1.00061 0.99253 1.22673 0.96755 0.96683 0.87028 0.92011 1.21793 0.90442 0.94534 0.98556 1.60925 1.08786 1.46702 1.15331 1.19155 0.81278 0.94529 0.94816 0.95137 1.22388 1.04751 0.96405 0.98988 1.21171 0.90793 0.94849 1.46316 0.92108 1.24952 0.97339 0.96583 0.95730 1.69891 1.04573 1.28887 1.50425 0.86532 0.78463 0.84258 0.78293 1.20867 1.21487 1.19997 1.63433 1.25847 1.17274 1.18183 1.22752 1.03046 0.88825 0.98770 1.23307 0.90827 0.99457 0.96876 0.94168 0.94155 0.89678 0.89426 0.90405 0.91700 0.95644 0.84856 0.89533 0.97536 0.95485 0.93172 0.88658 0.96054 0.92035 0.92996 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.35 16 2 O -0.38 -4.55 10.43 -35.23 -0.37 -4.91 16 3 C 0.07 0.78 3.44 -24.91 -0.09 0.70 16 4 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 5 C -0.12 -1.58 6.22 -24.60 -0.15 -1.73 16 6 C 0.08 1.16 2.82 -66.19 -0.19 0.97 16 7 H 0.06 0.94 7.77 -51.93 -0.40 0.53 16 8 C 0.08 1.43 5.29 -3.83 -0.02 1.41 16 9 N -0.69 -14.81 5.58 -107.95 -0.60 -15.41 16 10 C 0.21 5.41 2.57 -68.86 -0.18 5.23 16 11 H 0.03 0.86 7.80 -51.93 -0.40 0.46 16 12 C -0.17 -4.16 8.94 37.16 0.33 -3.83 16 13 C -0.49 -13.83 8.84 -34.44 -0.30 -14.14 16 14 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 16 N -0.90 -26.16 11.32 55.43 0.63 -25.53 16 17 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 N -0.52 -7.69 4.70 -231.60 -1.09 -8.78 16 22 C 0.01 0.20 8.67 60.07 0.52 0.72 16 23 C 0.02 0.30 6.67 -2.84 -0.02 0.28 16 24 H 0.04 0.29 8.11 -51.93 -0.42 -0.13 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 1.23 8.00 -51.92 -0.42 0.82 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 30 H 0.03 0.50 7.35 -51.93 -0.38 0.11 16 31 H 0.33 7.01 5.80 -39.29 -0.23 6.79 16 32 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 33 H 0.01 0.13 7.45 -51.93 -0.39 -0.25 16 34 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.09 1.53 5.74 -51.93 -0.30 1.23 16 37 H 0.02 0.27 8.09 -51.93 -0.42 -0.15 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.57 7.58 -51.93 -0.39 0.18 16 40 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 LS Contribution 313.01 15.07 4.72 4.72 Total: -1.00 -29.51 313.01 -7.80 -37.30 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.97 Total: 3.49 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 0.91 Total: -7.61 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -1.06 Total: -49.72 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.37 Total: -4.91 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.51 -7.80 -37.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393517408.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.848 kcal (2) G-P(sol) polarization free energy of solvation -29.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds