Wall clock time and date at job start Mon Mar 30 2020 05:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00256 * 2 1 4 4 H 1.09006 * 110.62509 * 26.89604 * 3 2 1 5 5 C 1.55142 * 110.70964 * 149.99916 * 3 2 1 6 6 C 1.54901 * 101.65437 * 154.03701 * 5 3 2 7 7 H 1.08998 * 110.46897 * 81.81248 * 6 5 3 8 8 C 1.52996 * 110.37525 * 204.10280 * 6 5 3 9 9 N 1.46898 * 109.47458 * 171.82744 * 8 6 5 10 10 C 1.46900 * 111.00296 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.47283 * 325.00506 * 10 9 8 12 12 C 1.53006 * 109.46973 * 84.99930 * 10 9 8 13 13 C 1.50700 * 109.47305 * 205.00195 * 10 9 8 14 14 H 1.08000 * 119.99867 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99783 * 180.02562 * 13 10 9 16 16 N 1.31510 * 120.00435 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99621 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47248 * 90.00128 * 17 15 13 19 19 H 1.48499 * 109.47212 * 209.99977 * 17 15 13 20 20 H 1.48500 * 109.47333 * 330.00335 * 17 15 13 21 21 N 1.47850 * 104.79640 * 322.93321 * 6 5 3 22 22 C 1.46901 * 110.99817 * 146.36479 * 21 6 5 23 23 C 1.47436 * 108.56587 * 24.09312 * 21 6 5 24 24 H 1.09004 * 109.46877 * 299.99592 * 1 2 3 25 25 H 1.08996 * 109.47100 * 60.00068 * 1 2 3 26 26 H 1.08996 * 109.46937 * 179.97438 * 1 2 3 27 27 H 1.09008 * 110.98625 * 35.94547 * 5 3 2 28 28 H 1.08998 * 111.02551 * 272.14754 * 5 3 2 29 29 H 1.08995 * 109.47308 * 291.83043 * 8 6 5 30 30 H 1.09007 * 109.47301 * 51.82774 * 8 6 5 31 31 H 1.00903 * 110.99923 * 303.95788 * 9 8 6 32 32 H 1.09003 * 109.47143 * 179.97438 * 12 10 9 33 33 H 1.08998 * 109.47400 * 300.00324 * 12 10 9 34 34 H 1.09001 * 109.46645 * 60.00185 * 12 10 9 35 35 H 0.96998 * 120.00168 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.47401 * 59.99854 * 22 21 6 37 37 H 1.09001 * 109.46874 * 299.99867 * 22 21 6 38 38 H 1.09004 * 109.46970 * 179.97438 * 22 21 6 39 39 H 1.09006 * 109.88842 * 118.41368 * 23 21 6 40 40 H 1.08996 * 109.89166 * 239.60437 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3353 2.0263 0.4615 5 6 3.3815 1.2954 0.7256 6 6 4.0989 2.4937 0.0556 7 1 3.7875 3.4308 0.5171 8 6 5.6167 2.3301 0.1565 9 7 6.2757 3.3669 -0.6489 10 6 7.7374 3.2411 -0.5753 11 1 8.0234 2.9044 0.4212 12 6 8.2147 2.2238 -1.6137 13 6 8.3716 4.5793 -0.8546 14 1 7.7508 5.4374 -1.0661 15 6 9.7443 4.7079 -0.8412 16 7 10.5002 3.6629 -0.5841 17 14 10.5303 6.3666 -1.1881 18 1 10.6966 7.1117 0.0856 19 1 11.8589 6.1624 -1.8192 20 1 9.6603 7.1443 -2.1065 21 7 3.6691 2.4484 -1.3583 22 6 3.5590 3.8019 -1.9186 23 6 2.3793 1.7384 -1.4345 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.9165 0.3646 0.5365 28 1 3.2590 1.4623 1.7957 29 1 5.9244 2.4284 1.1975 30 1 5.9016 1.3457 -0.2151 31 1 5.9576 3.3379 -1.6060 32 1 9.2993 2.1307 -1.5594 33 1 7.7560 1.2558 -1.4117 34 1 7.9287 2.5605 -2.6102 35 1 11.4659 3.7535 -0.5743 36 1 4.5281 4.2980 -1.8635 37 1 2.8258 4.3726 -1.3486 38 1 3.2419 3.7395 -2.9596 39 1 1.6121 2.4045 -1.8296 40 1 2.4762 0.8607 -2.0734 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393517408.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:45 Heat of formation + Delta-G solvation = -55.615888 kcal Electronic energy + Delta-G solvation = -18175.532547 eV Core-core repulsion = 15410.588124 eV Total energy + Delta-G solvation = -2764.944423 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 4.13 seconds Orbital eigenvalues (eV) -40.64990 -38.35111 -37.14740 -34.43704 -32.68614 -31.43638 -28.82564 -27.55472 -27.21679 -26.30722 -24.59829 -22.36498 -21.82832 -21.01717 -18.47178 -17.88553 -17.10003 -16.75437 -16.52009 -15.88285 -15.53061 -15.28552 -15.04770 -14.66474 -14.46387 -13.89091 -13.62722 -13.59185 -13.26540 -13.06186 -12.86105 -12.69459 -12.61598 -12.54145 -12.21261 -12.16181 -12.01533 -11.92097 -11.78726 -11.41135 -10.98073 -10.58719 -10.45624 -9.27487 -8.86885 -8.06334 -6.17699 1.45032 1.45273 1.56420 2.46282 2.70117 3.05316 3.21734 3.51270 3.66279 3.91713 3.99937 4.26578 4.35470 4.42035 4.44309 4.55096 4.58553 4.61417 4.73880 4.75680 4.82277 4.87322 4.90112 4.93287 4.97442 5.00190 5.12778 5.19109 5.25610 5.45675 5.71599 5.84792 6.03536 6.15462 6.25924 6.31490 6.71197 6.90283 7.00291 7.52393 8.99453 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.051246 B = 0.004579 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.254102 B = 6113.983653 C = 6340.391266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.075 3.925 4 H 0.087 0.913 5 C -0.119 4.119 6 C 0.085 3.915 7 H 0.065 0.935 8 C 0.079 3.921 9 N -0.682 5.682 10 C 0.213 3.787 11 H -0.001 1.001 12 C -0.152 4.152 13 C -0.512 4.512 14 H 0.056 0.944 15 C 0.006 3.994 16 N -0.925 5.925 17 Si 0.962 3.038 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.268 1.268 21 N -0.542 5.542 22 C 0.019 3.981 23 C 0.026 3.974 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.013 0.987 31 H 0.337 0.663 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.028 0.972 35 H 0.260 0.740 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.875 -3.930 0.445 20.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.318 6.318 3 C 0.016 3.984 4 H 0.105 0.895 5 C -0.157 4.157 6 C -0.023 4.023 7 H 0.083 0.917 8 C -0.051 4.051 9 N -0.313 5.313 10 C 0.105 3.895 11 H 0.017 0.983 12 C -0.211 4.211 13 C -0.551 4.551 14 H 0.074 0.926 15 C -0.192 4.192 16 N -0.565 5.565 17 Si 0.788 3.212 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.192 1.192 21 N -0.268 5.268 22 C -0.130 4.130 23 C -0.102 4.102 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.115 0.885 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.031 0.969 31 H 0.156 0.844 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.259 -3.926 0.652 19.666 hybrid contribution 0.295 0.449 -0.268 0.600 sum -18.964 -3.477 0.384 19.284 Atomic orbital electron populations 1.23004 0.79454 1.03914 1.00890 1.87923 1.21526 1.27351 1.94950 1.23360 0.94695 0.85174 0.95205 0.89529 1.22796 0.94464 0.98227 1.00262 1.22469 0.94090 0.97799 0.87941 0.91734 1.21832 0.92992 0.92872 0.97454 1.60827 1.06484 1.48046 1.15978 1.18947 0.83758 0.93760 0.93071 0.98293 1.22198 1.03004 0.97017 0.98915 1.21453 0.91346 0.95592 1.46688 0.92588 1.25753 0.97844 1.00166 0.95387 1.70023 1.04799 1.30814 1.50868 0.85491 0.77504 0.79905 0.78286 1.20328 1.21045 1.19225 1.63316 1.27687 1.17970 1.17792 1.22679 1.02005 0.88412 0.99880 1.23291 0.90171 0.99205 0.97499 0.92915 0.93168 0.88487 0.90946 0.88796 0.92343 0.96877 0.84384 0.92053 0.96213 0.95272 0.93082 0.91198 0.94636 0.90622 0.91000 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.85 113.37 1.23 1.55 16 2 O -0.40 -8.76 10.43 -148.98 -1.55 -10.32 16 3 C 0.07 1.57 3.44 31.77 0.11 1.68 16 4 H 0.09 1.50 7.82 -2.38 -0.02 1.48 16 5 C -0.12 -2.92 6.22 31.98 0.20 -2.72 16 6 C 0.09 2.49 2.82 45.38 0.13 2.61 16 7 H 0.06 1.86 7.77 -2.39 -0.02 1.84 16 8 C 0.08 2.95 5.29 86.30 0.46 3.40 16 9 N -0.68 -29.76 5.58 -495.44 -2.76 -32.53 16 10 C 0.21 11.24 2.57 44.17 0.11 11.35 16 11 H 0.00 -0.05 7.80 -2.39 -0.02 -0.07 16 12 C -0.15 -7.75 8.94 71.98 0.64 -7.11 16 13 C -0.51 -29.09 8.84 25.60 0.23 -28.86 16 14 H 0.06 3.17 7.81 -2.91 -0.02 3.14 16 15 C 0.01 0.35 5.30 84.66 0.45 0.80 16 16 N -0.92 -54.59 11.32 21.45 0.24 -54.35 16 17 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 N -0.54 -15.23 4.70 -886.66 -4.17 -19.39 16 22 C 0.02 0.48 8.67 127.69 1.11 1.59 16 23 C 0.03 0.60 6.67 86.65 0.58 1.18 16 24 H 0.05 0.60 8.11 -2.39 -0.02 0.58 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 2.00 8.00 -2.38 -0.02 1.98 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 2.22 8.05 -2.39 -0.02 2.21 16 30 H 0.01 0.52 7.35 -2.38 -0.02 0.50 16 31 H 0.34 14.26 5.80 -89.69 -0.52 13.74 16 32 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 33 H 0.02 0.90 7.45 -2.39 -0.02 0.88 16 34 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 35 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.07 2.19 5.74 -2.39 -0.01 2.18 16 37 H 0.04 0.82 8.09 -2.39 -0.02 0.80 16 38 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.07 1.36 7.58 -2.38 -0.02 1.34 16 40 H 0.07 1.84 8.06 -2.39 -0.02 1.82 16 Total: -1.00 -62.96 313.01 -0.50 -63.46 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.48 Total: 20.99 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 5.24 Total: -14.51 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -6.69 Total: -106.27 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -1.55 Total: -10.32 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -62.96 -0.50 -63.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393517408.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.843 kcal (2) G-P(sol) polarization free energy of solvation -62.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.13 seconds