Wall clock time and date at job start Mon Mar 30 2020 04:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 115.55064 * 2 1 4 4 C 1.53000 * 117.49920 * 214.33219 * 2 1 3 5 5 C 1.53002 * 60.02940 * 252.47484 * 4 2 1 6 6 H 1.09000 * 117.49996 * 107.50493 * 5 4 2 7 7 N 1.46909 * 117.49722 * 252.51823 * 5 4 2 8 8 C 1.46891 * 110.99938 * 223.61072 * 7 5 4 9 9 C 1.53008 * 109.47092 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.46903 * 304.99922 * 9 8 7 11 11 O 1.42900 * 109.46910 * 64.99626 * 9 8 7 12 12 C 1.52997 * 109.46946 * 184.99923 * 9 8 7 13 13 N 1.46904 * 109.46935 * 179.97438 * 12 9 8 14 14 C 1.46905 * 111.00121 * 293.95923 * 13 12 9 15 15 C 1.46901 * 111.00231 * 169.99971 * 13 12 9 16 16 C 1.50696 * 109.47193 * 189.99915 * 15 13 12 17 17 H 1.08005 * 120.00201 * 0.02562 * 16 15 13 18 18 C 1.37872 * 119.99901 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00316 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00039 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47138 * 89.99978 * 20 18 16 22 22 H 1.48500 * 109.47101 * 210.00162 * 20 18 16 23 23 H 1.48503 * 109.47099 * 330.00097 * 20 18 16 24 24 H 1.09001 * 109.47296 * 154.27542 * 1 2 3 25 25 H 1.09007 * 109.46973 * 274.28028 * 1 2 3 26 26 H 1.09008 * 109.47059 * 34.27409 * 1 2 3 27 27 H 1.09002 * 117.49833 * 359.97438 * 4 2 1 28 28 H 1.09002 * 117.49953 * 144.97630 * 4 2 1 29 29 H 1.00897 * 110.99263 * 99.65507 * 7 5 4 30 30 H 1.09000 * 109.47235 * 300.00125 * 8 7 5 31 31 H 1.08998 * 109.47875 * 60.00329 * 8 7 5 32 32 H 0.96698 * 113.99691 * 60.00686 * 11 9 8 33 33 H 1.08997 * 109.47319 * 299.99744 * 12 9 8 34 34 H 1.08999 * 109.47529 * 60.00198 * 12 9 8 35 35 H 1.08991 * 109.47161 * 59.99365 * 14 13 12 36 36 H 1.08999 * 109.46834 * 180.02562 * 14 13 12 37 37 H 1.09003 * 109.46714 * 299.99507 * 14 13 12 38 38 H 1.09003 * 109.47006 * 310.00385 * 15 13 12 39 39 H 1.09001 * 109.46822 * 70.00370 * 15 13 12 40 40 H 0.96995 * 120.00020 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2364 -1.1207 -0.7654 5 6 2.2375 -1.1215 0.7646 6 1 1.6131 -1.8596 1.2680 7 7 3.4982 -0.7899 1.4422 8 6 3.7481 -1.7031 2.5653 9 6 5.0663 -1.3268 3.2449 10 1 5.8669 -1.3182 2.5053 11 8 4.9462 -0.0294 3.8318 12 6 5.3892 -2.3515 4.3342 13 7 6.6551 -1.9906 4.9862 14 6 7.7815 -2.1082 4.0506 15 6 6.8804 -2.8067 6.1868 16 6 8.0483 -2.2510 6.9600 17 1 8.5708 -1.3785 6.5963 18 6 8.4493 -2.8557 8.1324 19 7 7.8128 -3.9178 8.5756 20 14 9.8967 -2.1664 9.0914 21 1 9.4090 -1.1600 10.0684 22 1 10.5806 -3.2681 9.8151 23 1 10.8511 -1.5232 8.1529 24 1 -0.3634 -0.9258 -0.4461 25 1 -0.3633 0.0767 1.0249 26 1 -0.3633 0.8493 -0.5788 27 1 1.6112 -1.8583 -1.2686 28 1 3.1711 -0.8745 -1.2692 29 1 3.5014 0.1710 1.7497 30 1 2.9334 -1.6251 3.2852 31 1 3.8091 -2.7264 2.1951 32 1 4.2512 0.0367 4.5009 33 1 4.5886 -2.3601 5.0738 34 1 5.4808 -3.3411 3.8865 35 1 7.6218 -1.4408 3.2039 36 1 8.7062 -1.8357 4.5593 37 1 7.8524 -3.1361 3.6948 38 1 5.9879 -2.7868 6.8123 39 1 7.0952 -3.8340 5.8926 40 1 8.0952 -4.3434 9.4002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591766444.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:52 Heat of formation + Delta-G solvation = -27.793678 kcal Electronic energy + Delta-G solvation = -17385.339229 eV Core-core repulsion = 14621.601268 eV Total energy + Delta-G solvation = -2763.737961 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.75323 -37.70417 -35.56186 -33.50814 -32.49677 -29.67326 -28.26285 -27.02189 -25.68595 -23.50310 -21.46572 -21.41381 -20.66755 -20.10434 -16.57931 -16.36790 -15.97187 -15.85003 -14.93278 -14.62206 -14.30719 -13.98430 -13.85357 -13.53507 -13.25360 -12.88825 -12.57998 -12.39091 -11.95735 -11.87714 -11.62882 -11.31677 -11.10528 -10.87488 -10.78518 -10.68418 -10.61955 -10.25450 -10.22231 -9.96351 -9.58403 -9.10404 -8.42107 -8.39462 -7.17418 -6.01394 -4.02286 3.33879 3.39404 3.43766 3.56576 3.77939 4.43862 4.59398 4.67018 4.71118 4.85629 5.03759 5.05128 5.24675 5.28228 5.31555 5.37286 5.48071 5.52455 5.61925 5.67894 5.73887 5.78295 5.82551 6.05272 6.09114 6.24026 6.35337 6.43421 6.81137 6.92396 7.25705 7.29028 7.34908 7.81969 7.97511 8.11976 8.22791 8.57477 9.05956 9.61941 11.09658 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.061958 B = 0.003510 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.812735 B = 7976.367254 C = 8013.960419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.169 4.169 3 H 0.105 0.895 4 C -0.166 4.166 5 C 0.020 3.980 6 H 0.097 0.903 7 N -0.655 5.655 8 C 0.030 3.970 9 C 0.113 3.887 10 H 0.103 0.897 11 O -0.546 6.546 12 C 0.025 3.975 13 N -0.529 5.529 14 C 0.036 3.964 15 C 0.192 3.808 16 C -0.505 4.505 17 H 0.064 0.936 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.273 1.273 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.350 0.650 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.367 0.633 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.008 0.992 38 H 0.028 0.972 39 H -0.011 1.011 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.787 4.974 -15.259 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.189 4.189 3 H 0.123 0.877 4 C -0.204 4.204 5 C -0.091 4.091 6 H 0.115 0.885 7 N -0.287 5.287 8 C -0.100 4.100 9 C 0.053 3.947 10 H 0.121 0.879 11 O -0.350 6.350 12 C -0.105 4.105 13 N -0.253 5.253 14 C -0.112 4.112 15 C 0.067 3.933 16 C -0.543 4.543 17 H 0.082 0.918 18 C -0.147 4.147 19 N -0.541 5.541 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.214 1.214 23 H -0.198 1.198 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.170 0.830 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.214 0.786 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.027 0.973 38 H 0.046 0.954 39 H 0.007 0.993 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.910 5.104 -15.781 20.419 hybrid contribution -0.306 -0.593 1.368 1.522 sum -12.216 4.511 -14.413 19.424 Atomic orbital electron populations 1.21363 0.92899 1.01923 1.01746 1.22709 0.95124 0.95056 1.05990 0.87676 1.23305 1.02174 1.00430 0.94534 1.22518 0.92071 1.00792 0.93686 0.88489 1.60136 1.31550 1.07833 1.29157 1.22735 0.97800 0.97570 0.91861 1.21987 0.95494 0.83462 0.93733 0.87897 1.86595 1.60005 1.30277 1.58136 1.22696 0.95366 0.95907 0.96508 1.62020 0.99781 1.56658 1.06889 1.22251 0.96000 0.97535 0.95426 1.19746 0.97337 0.90263 0.85945 1.21178 1.13905 1.12747 1.06503 0.91772 1.24997 0.97211 0.95025 0.97484 1.69959 1.41069 1.20706 1.22354 0.86486 0.82403 0.78456 0.79997 1.20623 1.21359 1.19821 0.92571 0.92380 0.92143 0.89021 0.88369 0.82990 0.94793 0.90250 0.78649 0.91340 0.95276 0.93355 0.90717 0.97343 0.95437 0.99296 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.19 37.15 0.38 -0.48 16 2 C -0.17 -1.45 6.21 -90.59 -0.56 -2.01 16 3 H 0.11 0.92 8.14 -51.92 -0.42 0.49 16 4 C -0.17 -1.51 10.10 -26.73 -0.27 -1.78 16 5 C 0.02 0.20 5.98 -67.67 -0.40 -0.21 16 6 H 0.10 0.93 7.90 -51.93 -0.41 0.52 16 7 N -0.66 -7.48 6.75 -106.68 -0.72 -8.20 16 8 C 0.03 0.36 5.21 -3.82 -0.02 0.34 16 9 C 0.11 1.65 3.08 -26.73 -0.08 1.57 16 10 H 0.10 1.63 6.55 -51.93 -0.34 1.29 16 11 O -0.55 -8.39 12.72 -35.23 -0.45 -8.84 16 12 C 0.03 0.44 4.62 -3.82 -0.02 0.42 16 13 N -0.53 -11.64 4.62 -244.37 -1.13 -12.77 16 14 C 0.04 0.74 9.14 60.07 0.55 1.29 16 15 C 0.19 5.09 4.72 -4.98 -0.02 5.07 16 16 C -0.50 -14.45 8.46 -34.44 -0.29 -14.74 16 17 H 0.06 1.83 7.12 -52.48 -0.37 1.46 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 20 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 25 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 26 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.35 3.98 8.24 -39.29 -0.32 3.65 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.37 4.60 9.04 45.56 0.41 5.01 16 33 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 34 H 0.03 0.51 8.12 -51.93 -0.42 0.08 16 35 H 0.05 0.87 6.47 -51.93 -0.34 0.53 16 36 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 37 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 39 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -30.86 326.85 -8.81 -39.67 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.31 Total: 3.68 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -0.84 Total: -9.07 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -1.11 Total: -47.29 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.45 Total: -8.84 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.86 -8.81 -39.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591766444.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.877 kcal (2) G-P(sol) polarization free energy of solvation -30.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds